UBERON:0004237: Difference between revisions
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|located_in= | |located_in= | ||
|name=blood vessel smooth muscle | |name=blood vessel smooth muscle | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001981 | |part_of=UBERON:0001981 | ||
Latest revision as of 17:45, 12 September 2014
| Name: | blood vessel smooth muscle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "smooth muscle found within, and composing the majority of the wall of blood vessels." [Wikipedia:Vascular_smooth_muscle] | ||
| Xrefs: |
| ||
| Synonyms: |
"blood vessel involuntary muscle" EXACT [OBOL:automatic] "blood vessel non-striated muscle" EXACT [OBOL:automatic] "blood vessel smooth muscle tissue" EXACT [OBOL:automatic] "involuntary muscle of blood vessel" EXACT [OBOL:automatic] "non-striated muscle of blood vessel" EXACT [OBOL:automatic] "smooth muscle of blood vessel" EXACT [OBOL:automatic] "smooth muscle tissue of blood vessel" EXACT [OBOL:automatic] "vascular smooth muscle" EXACT [ZFA:0005321] "vascular smooth muscle tissue" EXACT [] | ||
| Comments: | Function notes: Vascular smooth muscle contracts or relaxes to both change the volume of blood vessels and the local blood pressure, a mechanism that is responsible for the redistribution of the blood within the body to areas where it is needed (i.e. areas with temporarily enhanced oxygen consumption). Thus the main function of vascular smooth muscle tonus is to regulate the caliber of the blood vessels in the body. Excessive vasoconstriction leads to hypertension, while excessive vasodilation as in shock leads to hypotension. | ||
| Alt_id: | UBERON:0010508 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001135(smooth muscle tissue) |
|---|---|
| part_of: | UBERON:0001981(blood vessel) |
Children
| is a: | UBERON:0002111 (artery smooth muscle tissue),UBERON:0004178 (aorta smooth muscle tissue) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11297-117B1 (Canine Aortic Smooth Muscle cells, donor1)
- 11298-117B2 (Chicken Aortic Smooth Muscle cells, donor1)
- 11299-117B3 (Mouse Aortic Smooth Muscle cells, donor1)
- 11300-117B4 (Rat Aortic Smooth Muscle cells, donor1)
- 11325-117E2 (Canine hepatocytes, donor2)
- 11360-117I1 (Smooth Muscle Cells - Aortic, donor2)
- 11374-118A6 (Canine Aortic Smooth Muscle cells, donor2)
... further results Mouse (Mus musculus)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11297-117B1 (Canine Aortic Smooth Muscle cells, donor1)
- 11298-117B2 (Chicken Aortic Smooth Muscle cells, donor1)
- 11299-117B3 (Mouse Aortic Smooth Muscle cells, donor1)
- 11300-117B4 (Rat Aortic Smooth Muscle cells, donor1)
- 11325-117E2 (Canine hepatocytes, donor2)
- 11360-117I1 (Smooth Muscle Cells - Aortic, donor2)
- 11374-118A6 (Canine Aortic Smooth Muscle cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004237 (blood vessel smooth muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_ebbd76f3f8f080733acaf8f2585eeaba | p5@Adamts2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr17:14802633..14802637, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr17:14827154..14827169, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_ebbd76f3f8f080733acaf8f2585eeaba | p5@Adamts2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr17:14802633..14802637, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr2:178190171..178190178, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_ebbd76f3f8f080733acaf8f2585eeaba | p@chrX:160839744..160839754, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr2:112043522..112043530, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr17:87574327..87574332, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr8:69228447..69228492, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr2:112043522..112043530, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr8:69228447..69228492, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr2:178190171..178190178, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_ebbd76f3f8f080733acaf8f2585eeaba | p@chrX:160839744..160839754, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr17:87574327..87574332, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_ebbd76f3f8f080733acaf8f2585eeaba | p@chr17:14827154..14827169, - |
| 5.79e-79 | FFCP PHASE1:Hg19::chr1:110429102..110429103,+#_6913bea811fdc29c6c6bf61c2e6bda3c | p@chr1:110429102..110429103, + |
| 5.79e-79 | FFCP PHASE2:Hg19::chr1:110429102..110429103,+#_6913bea811fdc29c6c6bf61c2e6bda3c | p@chr1:110429102..110429103, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_f6663f11bcf7d9874050c2eeb34cba66 | p@chr6:128920492..128920498, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_f6663f11bcf7d9874050c2eeb34cba66 | p@chrX:160840048..160840057, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_f6663f11bcf7d9874050c2eeb34cba66 | p6@Npy1r |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_f6663f11bcf7d9874050c2eeb34cba66 | p@chr11:118164535..118164544, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_f6663f11bcf7d9874050c2eeb34cba66 | p6@Npy1r |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_f6663f11bcf7d9874050c2eeb34cba66 | p@chrX:160840025..160840037, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_f6663f11bcf7d9874050c2eeb34cba66 | p@chr6:128920492..128920498, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_f6663f11bcf7d9874050c2eeb34cba66 | p@chr11:118164535..118164544, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_f6663f11bcf7d9874050c2eeb34cba66 | p@chrX:160840048..160840057, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_f6663f11bcf7d9874050c2eeb34cba66 | p5@Myl12b |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_f6663f11bcf7d9874050c2eeb34cba66 | p@chrX:160840025..160840037, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_f6663f11bcf7d9874050c2eeb34cba66 | p5@Myl12b |
| 2.21e-65 | FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_a8891c3c0756558d1ef807620560067a | p1@ENSMUST00000150529 |
| 2.21e-65 | FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_a8891c3c0756558d1ef807620560067a | p1@ENSMUST00000150529 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_61ae0279b955b5714773204e03839c78 | p@chr14:24251697..24251707, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_61ae0279b955b5714773204e03839c78 | p@chr10:96946110..96946113, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_61ae0279b955b5714773204e03839c78 | p@chr10:33816181..33816195, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_61ae0279b955b5714773204e03839c78 | p@chr17:87544959..87544962, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_61ae0279b955b5714773204e03839c78 | p@chrX:160811352..160811356, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_61ae0279b955b5714773204e03839c78 | p@chrX:160839012..160839023, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_61ae0279b955b5714773204e03839c78 | p12@Gpr39 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_61ae0279b955b5714773204e03839c78 | p@chr10:96946110..96946113, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_61ae0279b955b5714773204e03839c78 | p8@Vit |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_61ae0279b955b5714773204e03839c78 | p@chr17:87544959..87544962, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_61ae0279b955b5714773204e03839c78 | p8@Vit |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_61ae0279b955b5714773204e03839c78 | p@chr17:14817013..14817022, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_61ae0279b955b5714773204e03839c78 | p@chrX:160839012..160839023, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_61ae0279b955b5714773204e03839c78 | p12@Gpr39 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_61ae0279b955b5714773204e03839c78 | p@chr8:69857155..69857159, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_61ae0279b955b5714773204e03839c78 | p@chrX:160811352..160811356, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_61ae0279b955b5714773204e03839c78 | p@chr8:69857155..69857159, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_61ae0279b955b5714773204e03839c78 | p@chr14:24251697..24251707, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_61ae0279b955b5714773204e03839c78 | p@chr17:14817013..14817022, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_61ae0279b955b5714773204e03839c78 | p@chr10:33816181..33816195, - |
| 1.26e-55 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_0d192e03141d25bb1e5af60fbb7d2d8f | p@chr6:53359400..53359406, + |
| 1.26e-55 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_0d192e03141d25bb1e5af60fbb7d2d8f | p@chr6:53359400..53359406, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_f87af9963e5bcafb5affe925c78608ea | p5@Npy1r |
| 4.9e-53 | FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_f87af9963e5bcafb5affe925c78608ea | p@chr10:67821185..67821217, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_f87af9963e5bcafb5affe925c78608ea | p@chr14:24251717..24251731, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_f87af9963e5bcafb5affe925c78608ea | p5@Npy1r |
| 4.9e-53 | FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_f87af9963e5bcafb5affe925c78608ea | p@chr17:29227828..29227839, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_f87af9963e5bcafb5affe925c78608ea | p@chr14:24251717..24251731, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_f87af9963e5bcafb5affe925c78608ea | p@chr10:67821185..67821217, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_f87af9963e5bcafb5affe925c78608ea | p@chr10:67598037..67598049, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_f87af9963e5bcafb5affe925c78608ea | p@chr2:113589030..113589077, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_f87af9963e5bcafb5affe925c78608ea | p@chr7:91081998..91082010, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_f87af9963e5bcafb5affe925c78608ea | p4@Il6st |
| 4.9e-53 | FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_f87af9963e5bcafb5affe925c78608ea | p@chr2:113589030..113589077, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_f87af9963e5bcafb5affe925c78608ea | p@chr17:29227828..29227839, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_f87af9963e5bcafb5affe925c78608ea | p@chr7:91081998..91082010, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_f87af9963e5bcafb5affe925c78608ea | p4@Il6st |
| 4.9e-53 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_f87af9963e5bcafb5affe925c78608ea | p@chr10:67598037..67598049, - |
| 7.35e-53 | FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_12325f52df4c39873dbdaa5915c947b0 | p11@Svep1 |
| 7.35e-53 | FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_12325f52df4c39873dbdaa5915c947b0 | p11@Svep1 |
| 1.1e-52 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_c82b3bf0d06960d13a9ff51e88072891 | p@chrX:160838787..160838800, + |
| 1.1e-52 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_c82b3bf0d06960d13a9ff51e88072891 | p@chrX:160838787..160838800, + |
| 1.65e-52 | FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_f046a0ab772808dc451c58f3d9880583 | p5@Phlda3 |
| 1.65e-52 | FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_f046a0ab772808dc451c58f3d9880583 | p5@Phlda3 |
| 5.51e-52 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_db94146ac04e1edfdeb75772de1151a7 | p@chr2:65009852..65009866, - |
| 5.51e-52 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_db94146ac04e1edfdeb75772de1151a7 | p@chr2:65009852..65009866, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_6a7cd2d917d7300a9a4ab9b995c15acd | p@chrX:160838683..160838694, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_6a7cd2d917d7300a9a4ab9b995c15acd | p@chr13:119579287..119579292, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr2:178190136..178190151,+#_6a7cd2d917d7300a9a4ab9b995c15acd | p@chr2:178190136..178190151, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_6a7cd2d917d7300a9a4ab9b995c15acd | p10@Gpr39 |
| 1.18e-44 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_6a7cd2d917d7300a9a4ab9b995c15acd | p@chr17:14813242..14813246, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr11:86417559..86417568,+#_6a7cd2d917d7300a9a4ab9b995c15acd | p@chr11:86417559..86417568, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_6a7cd2d917d7300a9a4ab9b995c15acd | p10@Gpr39 |
| 1.18e-44 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_6a7cd2d917d7300a9a4ab9b995c15acd | p@chr17:14813242..14813246, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr2:178190136..178190151,+#_6a7cd2d917d7300a9a4ab9b995c15acd | p@chr2:178190136..178190151, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_6a7cd2d917d7300a9a4ab9b995c15acd | p@chrX:160838683..160838694, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr11:86417559..86417568,+#_6a7cd2d917d7300a9a4ab9b995c15acd | p@chr11:86417559..86417568, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_6a7cd2d917d7300a9a4ab9b995c15acd | p@chr13:119579287..119579292, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chrX:160839663..160839673,+#_5ade0400a51e95ec22e8d534ef485173 | p@chrX:160839663..160839673, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chrX:160839663..160839673,+#_5ade0400a51e95ec22e8d534ef485173 | p@chrX:160839663..160839673, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chr13:119503185..119503195,+#_5ade0400a51e95ec22e8d534ef485173 | p9@Fgf10 |
| 1.66e-44 | FFCP PHASE1:Mm9::chr13:119503185..119503195,+#_5ade0400a51e95ec22e8d534ef485173 | p9@Fgf10 |
| 2.33e-44 | FFCP PHASE1:Mm9::chr17:75790300..75790304,+#_708dac618a6f0dfaf92c850686aacd4d | p@chr17:75790300..75790304, + |
| 2.33e-44 | FFCP PHASE2:Mm9::chr17:75790300..75790304,+#_708dac618a6f0dfaf92c850686aacd4d | p@chr17:75790300..75790304, + |
| 3.27e-44 | FFCP PHASE1:Mm9::chr1:127573708..127573719,+#_6da712fbf74624270a9f49037c04ec8c | p9@Gpr39 |
| 3.27e-44 | FFCP PHASE2:Mm9::chr1:127573708..127573719,+#_6da712fbf74624270a9f49037c04ec8c | p9@Gpr39 |
| 4.58e-44 | FFCP PHASE2:Mm9::chr17:14813991..14813999,+#_c3e07cf24b4518ad4e9f6c20a9041852 | p@chr17:14813991..14813999, + |
| 4.58e-44 | FFCP PHASE1:Mm9::chr17:14813991..14813999,+#_c3e07cf24b4518ad4e9f6c20a9041852 | p@chr17:14813991..14813999, + |
