FFCP PHASE1:Mm9::chr7:107375821..107375894,+: Difference between revisions
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{{FFCP|EntrezGene=70974|HGNC=|MCL_coexpression_id=2|UniProt=Q8CAA7|association_with_transcript=-9bp_to_ENSMUST00000084935_5end|description=CAGE_peak_2_at_Pgm2l1_5end|id=chr7:107375821..107375894,+|ontology_enrichment_celltype=CL:0000117!3.81e-12!23;CL:0000337!3.81e-12!23;CL:0000540!3.10e-08!33;CL:0000047!3.10e-08!33;CL:0000031!3.10e-08!33;CL:0000404!3.10e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.72e-12,23;CL:0000337,3.72e-12,23;CL:0000540,3.06e-08,33;CL:0000047,3.06e-08,33;CL:0000031,3.06e-08,33;CL:0000404,3.06e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!6.73e-16!34;UBERON:0007811!1.04e-14!86;UBERON:0001049!3.96e-14!52;UBERON:0005068!3.96e-14!52;UBERON:0006241!3.96e-14!52;UBERON:0007135!3.96e-14!52;UBERON:0000153!1.21e-13!94;UBERON:0000955!3.57e-13!50;UBERON:0006238!3.57e-13!50;UBERON:0002791!4.64e-13!29;UBERON:0003528!4.64e-13!29;UBERON:0001893!4.64e-13!29;UBERON:0000033!7.45e-13!63;UBERON:0002616!1.03e-12!49;UBERON:0001017!5.24e-12!73;UBERON:0005743!5.24e-12!73;UBERON:0000073!1.12e-11!75;UBERON:0001016!1.12e-11!75;UBERON:0003056!2.21e-11!49;UBERON:0002346!3.24e-11!71;UBERON:0003075!3.24e-11!71;UBERON:0007284!3.24e-11!71;UBERON:0003080!3.59e-11!40;UBERON:0002780!9.57e-11!39;UBERON:0001890!9.57e-11!39;UBERON:0006240!9.57e-11!39;UBERON:0004121!5.61e-09!102;UBERON:0000924!5.61e-09!102;UBERON:0006601!5.61e-09!102;UBERON:0000956!8.41e-09!21;UBERON:0001869!8.41e-09!21;UBERON:0000203!8.41e-09!21;UBERON:0002021!4.55e-08!10;UBERON:0000411!4.55e-08!10;UBERON:0001950!4.55e-08!10;UBERON:0002619!1.97e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.09e-16,34;UBERON:0000073,2.09e-15,54;UBERON:0001049,3.97e-14,52;UBERON:0005068,3.97e-14,52;UBERON:0006241,3.97e-14,52;UBERON:0007135,3.97e-14,52;UBERON:0002346,6.31e-14,64;UBERON:0003075,6.31e-14,64;UBERON:0007284,6.31e-14,64;UBERON:0003528,3.56e-13,29;UBERON:0002791,3.56e-13,29;UBERON:0001893,3.56e-13,29;UBERON:0010371,4.61e-13,73;UBERON:0001017,4.29e-12,73;UBERON:0001016,9.20e-12,75;UBERON:0000955,1.47e-11,47;UBERON:0006238,1.47e-11,47;UBERON:0003056,2.09e-11,49;UBERON:0003080,3.38e-11,40;UBERON:0002616,4.08e-11,46;UBERON:0004121,8.04e-11,95;UBERON:0000924,8.04e-11,95;UBERON:0006601,8.04e-11,95;UBERON:0002780,9.01e-11,39;UBERON:0001890,9.01e-11,39;UBERON:0006240,9.01e-11,39;UBERON:0000956,6.63e-09,21;UBERON:0001869,6.63e-09,21;UBERON:0000203,6.63e-09,21;UBERON:0002021,4.48e-08,10;UBERON:0000411,4.48e-08,10;UBERON:0001950,4.48e-08,10;UBERON:0002619,1.55e-07,17|phase1_expression=4.16387002472464,0.348975407639361,0,0.30246421130683,1.00179145989269,6.04365378882803,3.03696432774183,2.96983643915625,4.92760527530834,4.21316147379588,6.50628279256919,6.1424562426409,3.59521532855532,5.07038334030185,3.99731714178795,5.06188168474565,8.39474253753776,1.41957974411207,3.15363197293199,2.54633791078818,5.27268398936633,4.46809280403984,5.74639536105658,2.87986361028132,1.14704640533585,2.8711598205751,0.430761996159075,1.50829862880122,0.760093677825496,1.26015064879965,1.33038306393183,5.08024538767705,3.07532393792285,0,7.79899373328441,8.14549762256613,11.0251452381679,0,0.7813353445238,0.523523743973798,0.588231488031014,1.36609096991689,1.45653105909346,0.377690453926732,0.709638518536602,0,0.782391344348039,0.436050312760893,0,0.388859798148567,0.279972843250725,0,4.19456515144341,9.42970784614748,7.73015738027667,0,3.43840127926508,0.515672092277442,11.1274053472779,11.6378015439847,6.97214543856797,0.338844532069132,0.889294796111139,3.5995988691256,2.96659908770092,3.5524005747305,1.49800055259202,1.15265491596466,7.15458324928496,4.45519596494579,6.09942387919008,13.139945282575,9.93908434282261,7.59442955132715,6.13411014516713,11.0306254393203,14.3150645299205,16.8547286272448,15.2070467923681,11.7378796079873,13.4486836095542,8.85552729946492,8.09630697104005,9.56696437053856,16.9606055032259,17.9723437138937,14.5219114415085,12.1159639786445,2.49896437999507,4.08086424576642,2.6087803983151,5.16254326188832,0.679971333707751,1.61910957491345,1.29955283489534,3.58421509677868,1.82577746171277,1.1930122580464,2.07828803682295,0.70667914902068,6.61964072950398,1.28326477414318,5.09610479413291,7.11066703153331,2.59789249213457,2.02687892380079,3.53867111510348,2.96878087269556,1.8125651855302,1.63286352971307,3.81667718885499,3.34912026143355,2.07553947530453,3.01445281105245,2.23418543557839,1.13099932196708,1.97755974187499,1.59059292611903,3.5384422077995,3.23533699894818,3.09178125844551,3.39412677194655,0,14.9318206475889,17.8029700791437,2.29911349687732,3.11519323715393,5.99902730993408,3.55796635804581,7.78911324905078,17.8425235099264,21.6125485634127,37.8937018019163,42.1930504595045,13.9217989854905,19.3067103050632,3.46253837091075,3.85661608891288,3.0326731012041,4.20883711772948,3.25301107406759,2.98872735763515,5.04173963454978,4.21973489940002,5.8511389270142,4.22775276940004,5.80950692270319,3.62184719034622,3.23351989399263,5.10586416453112,3.51902248327898,2.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:70974 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8CAA7 | |||
|association_with_transcript=-9bp_to_ENSMUST00000084935_5end | |||
|cluster_id=chr7:107375821..107375894,+ | |||
|description=CAGE_peak_2_at_Pgm2l1_5end | |||
|id=chr7:107375821..107375894,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.81e-12!23;CL:0000337!3.81e-12!23;CL:0000540!3.10e-08!33;CL:0000047!3.10e-08!33;CL:0000031!3.10e-08!33;CL:0000404!3.10e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.72e-12,23;CL:0000337,3.72e-12,23;CL:0000540,3.06e-08,33;CL:0000047,3.06e-08,33;CL:0000031,3.06e-08,33;CL:0000404,3.06e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!6.73e-16!34;UBERON:0007811!1.04e-14!86;UBERON:0001049!3.96e-14!52;UBERON:0005068!3.96e-14!52;UBERON:0006241!3.96e-14!52;UBERON:0007135!3.96e-14!52;UBERON:0000153!1.21e-13!94;UBERON:0000955!3.57e-13!50;UBERON:0006238!3.57e-13!50;UBERON:0002791!4.64e-13!29;UBERON:0003528!4.64e-13!29;UBERON:0001893!4.64e-13!29;UBERON:0000033!7.45e-13!63;UBERON:0002616!1.03e-12!49;UBERON:0001017!5.24e-12!73;UBERON:0005743!5.24e-12!73;UBERON:0000073!1.12e-11!75;UBERON:0001016!1.12e-11!75;UBERON:0003056!2.21e-11!49;UBERON:0002346!3.24e-11!71;UBERON:0003075!3.24e-11!71;UBERON:0007284!3.24e-11!71;UBERON:0003080!3.59e-11!40;UBERON:0002780!9.57e-11!39;UBERON:0001890!9.57e-11!39;UBERON:0006240!9.57e-11!39;UBERON:0004121!5.61e-09!102;UBERON:0000924!5.61e-09!102;UBERON:0006601!5.61e-09!102;UBERON:0000956!8.41e-09!21;UBERON:0001869!8.41e-09!21;UBERON:0000203!8.41e-09!21;UBERON:0002021!4.55e-08!10;UBERON:0000411!4.55e-08!10;UBERON:0001950!4.55e-08!10;UBERON:0002619!1.97e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.09e-16,34;UBERON:0000073,2.09e-15,54;UBERON:0001049,3.97e-14,52;UBERON:0005068,3.97e-14,52;UBERON:0006241,3.97e-14,52;UBERON:0007135,3.97e-14,52;UBERON:0002346,6.31e-14,64;UBERON:0003075,6.31e-14,64;UBERON:0007284,6.31e-14,64;UBERON:0003528,3.56e-13,29;UBERON:0002791,3.56e-13,29;UBERON:0001893,3.56e-13,29;UBERON:0010371,4.61e-13,73;UBERON:0001017,4.29e-12,73;UBERON:0001016,9.20e-12,75;UBERON:0000955,1.47e-11,47;UBERON:0006238,1.47e-11,47;UBERON:0003056,2.09e-11,49;UBERON:0003080,3.38e-11,40;UBERON:0002616,4.08e-11,46;UBERON:0004121,8.04e-11,95;UBERON:0000924,8.04e-11,95;UBERON:0006601,8.04e-11,95;UBERON:0002780,9.01e-11,39;UBERON:0001890,9.01e-11,39;UBERON:0006240,9.01e-11,39;UBERON:0000956,6.63e-09,21;UBERON:0001869,6.63e-09,21;UBERON:0000203,6.63e-09,21;UBERON:0002021,4.48e-08,10;UBERON:0000411,4.48e-08,10;UBERON:0001950,4.48e-08,10;UBERON:0002619,1.55e-07,17 | |||
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| |||
|short_description=p2@Pgm2l1 | |||
}} |
Revision as of 21:14, 3 August 2015
Short description: | p2@Pgm2l1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pgm2l1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | -9bp_to_ENSMUST00000084935_5end |
EntrezGene: | 70974 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.72e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.72e-12 | 23 |
neuron | 3.06e-08 | 33 |
neuronal stem cell | 3.06e-08 | 33 |
neuroblast | 3.06e-08 | 33 |
electrically signaling cell | 3.06e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
gray matter | 5.09e-16 | 34 |
regional part of nervous system | 2.09e-15 | 54 |
neural tube | 3.97e-14 | 52 |
neural rod | 3.97e-14 | 52 |
future spinal cord | 3.97e-14 | 52 |
neural keel | 3.97e-14 | 52 |
neurectoderm | 6.31e-14 | 64 |
neural plate | 6.31e-14 | 64 |
presumptive neural plate | 6.31e-14 | 64 |
brain grey matter | 3.56e-13 | 29 |
regional part of telencephalon | 3.56e-13 | 29 |
telencephalon | 3.56e-13 | 29 |
ecto-epithelium | 4.61e-13 | 73 |
central nervous system | 4.29e-12 | 73 |
nervous system | 9.20e-12 | 75 |
brain | 1.47e-11 | 47 |
future brain | 1.47e-11 | 47 |
pre-chordal neural plate | 2.09e-11 | 49 |
anterior neural tube | 3.38e-11 | 40 |
regional part of brain | 4.08e-11 | 46 |
ectoderm-derived structure | 8.04e-11 | 95 |
ectoderm | 8.04e-11 | 95 |
presumptive ectoderm | 8.04e-11 | 95 |
regional part of forebrain | 9.01e-11 | 39 |
forebrain | 9.01e-11 | 39 |
future forebrain | 9.01e-11 | 39 |
cerebral cortex | 6.63e-09 | 21 |
cerebral hemisphere | 6.63e-09 | 21 |
pallium | 6.63e-09 | 21 |
occipital lobe | 4.48e-08 | 10 |
visual cortex | 4.48e-08 | 10 |
neocortex | 4.48e-08 | 10 |
regional part of cerebral cortex | 1.55e-07 | 17 |