FFCP PHASE1:Mm9::chr19:5098460..5098559,-: Difference between revisions
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{{FFCP|EntrezGene=12794|HGNC=|MCL_coexpression_id=13|UniProt=O35089,Q3SYI8|association_with_transcript=-42bp_to_ENSMUST00000025805,NM_009920,uc008gce.1,uc012bgt.1_5end|description=CAGE_peak_1_at_Cnih2_5end|id=chr19:5098460..5098559,-|ontology_enrichment_celltype=CL:0000117!5.86e-15!23;CL:0000337!5.86e-15!23;CL:0000221!1.07e-14!44;CL:0000133!1.07e-14!44;CL:0002319!1.48e-14!43;CL:0000540!4.82e-14!33;CL:0000047!4.82e-14!33;CL:0000031!4.82e-14!33;CL:0000404!4.82e-14!33;CL:0000055!1.82e-11!50;CL:0000393!6.92e-11!39;CL:0000211!6.92e-11!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.08e-15,23;CL:0000337,1.08e-15,23;CL:0000221,4.23e-15,44;CL:0000133,4.23e-15,44;CL:0002319,6.01e-15,43;CL:0000540,9.98e-15,33;CL:0000047,9.98e-15,33;CL:0000031,9.98e-15,33;CL:0000404,9.98e-15,33;CL:0000393,2.03e-10,39;CL:0000211,2.03e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.80e-32!73;UBERON:0005743!9.80e-32!73;UBERON:0000073!3.39e-31!75;UBERON:0001016!3.39e-31!75;UBERON:0004121!1.91e-28!102;UBERON:0000924!1.91e-28!102;UBERON:0006601!1.91e-28!102;UBERON:0002346!1.02e-26!71;UBERON:0003075!1.02e-26!71;UBERON:0007284!1.02e-26!71;UBERON:0001049!7.10e-26!52;UBERON:0005068!7.10e-26!52;UBERON:0006241!7.10e-26!52;UBERON:0007135!7.10e-26!52;UBERON:0000955!2.93e-24!50;UBERON:0006238!2.93e-24!50;UBERON:0000033!4.26e-24!63;UBERON:0002616!1.02e-23!49;UBERON:0003056!5.43e-21!49;UBERON:0003080!4.01e-20!40;UBERON:0002020!9.29e-20!34;UBERON:0002780!1.26e-19!39;UBERON:0001890!1.26e-19!39;UBERON:0006240!1.26e-19!39;UBERON:0002791!1.67e-16!29;UBERON:0003528!1.67e-16!29;UBERON:0001893!1.67e-16!29;UBERON:0000153!7.62e-14!94;UBERON:0007811!6.09e-13!86;UBERON:0000956!1.27e-11!21;UBERON:0001869!1.27e-11!21;UBERON:0000203!1.27e-11!21;UBERON:0002619!2.83e-09!17;UBERON:0002021!8.41e-07!10;UBERON:0000411!8.41e-07!10;UBERON:0001950!8.41e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.13e-33,73;UBERON:0001016,1.92e-32,75;UBERON:0004121,2.08e-29,95;UBERON:0000924,2.08e-29,95;UBERON:0006601,2.08e-29,95;UBERON:0000073,1.30e-28,54;UBERON:0002346,1.55e-28,64;UBERON:0003075,1.55e-28,64;UBERON:0007284,1.55e-28,64;UBERON:0001049,3.27e-27,52;UBERON:0005068,3.27e-27,52;UBERON:0006241,3.27e-27,52;UBERON:0007135,3.27e-27,52;UBERON:0010371,6.72e-26,73;UBERON:0000955,1.06e-23,47;UBERON:0006238,1.06e-23,47;UBERON:0002616,3.85e-23,46;UBERON:0003056,4.66e-22,49;UBERON:0003080,3.84e-21,40;UBERON:0002020,9.32e-21,34;UBERON:0002780,1.28e-20,39;UBERON:0001890,1.28e-20,39;UBERON:0006240,1.28e-20,39;UBERON:0010314,1.90e-17,92;UBERON:0003528,2.53e-17,29;UBERON:0002791,2.53e-17,29;UBERON:0001893,2.53e-17,29;UBERON:0000956,3.55e-12,21;UBERON:0001869,3.55e-12,21;UBERON:0000203,3.55e-12,21;UBERON:0002619,1.07e-09,17;UBERON:0002021,4.32e-07,10;UBERON:0000411,4.32e-07,10;UBERON:0001950,4.32e-07,10|phase1_expression=25.7839643838718,0.348975407639361,0,0.30246421130683,0,0.33575854382378,0.233612640595526,0.774739940649458,1.54867594366833,2.80877431586392,0.34243593645101,1.27635454392538,0,0,0,0,0,0,0,0,36.2284416043557,0.198581902401771,0,0.159992422793407,0,0,0,0.215471232685889,0.190023419456374,0.252030129759931,0.665191531965914,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,1.1330713617802,0.912392380975631,1.28482726513177,41.4667412504461,4.57852828398938,6.15121311656521,4.47188767870852,7.27929392451885,18.6878333674463,0,0,0,0.514518872071894,0.286533439938757,0.515672092277442,356.683920495471,340.141199671917,313.746544735559,11.5207140903505,8.00365316500025,1.3498495759221,2.96659908770092,1.4209602298922,42.5432156936135,124.870949229505,189.855680136823,182.663034562777,180.038166916783,211.667379443218,168.743565287033,187.16594120045,165.045901093403,165.459381589804,105.711245759413,152.714056349885,139.474732196669,373.8976257151,381.594961465651,293.274227623456,86.5467296904281,142.941702948047,137.212826503575,209.186295686304,168.710441746937,251.825651309981,0.681535739998656,10.0510174942025,0,0.860423876981386,0,0.539703191637817,0,0,5.47733238513832,4.77204903218562,3.63700406444016,3.5333957451034,14.7885590765515,5.13305909657271,2.54805239706646,0,0.216491041011214,0,0,5.82337786567206,0.258937883647172,2.3750742250372,17.3485326766136,10.3518262626128,10.6083128737787,5.42601505989441,7.52567725668511,2.63899841792318,0.247194967734374,0,0,0.808834249737046,0.441683036920787,0,0,33.6697916563279,43.1460216035717,0.510914110417183,0.11981512450592,0,0.127070227073065,90.6233368399177,168.360221837255,365.528510296323,171.738428349969,219.659577846754,148.984027949205,158.185231491064,5.70300437561771,0.373220911830279,0.505445516867349,1.47309299120532,13.7927669540466,25.289231487682,32.5912454947682,19.1395118651358,17.8935992767992,17.5515796790244,24.3624483855295,10.3481348295606,21.3412313003514,18.9106080167819,22.5217438929855,16.4396799320681,10.5657954705727,10.7958171621872,6.1734640922383,11.1459189418356,0,0,0,3.93538967817454,4.22146907965973,3.96136535214233,2.84093682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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:12794 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O35089,uniprot:Q3SYI8 | |||
|association_with_transcript=-42bp_to_ENSMUST00000025805,NM_009920,uc008gce.1,uc012bgt.1_5end | |||
|cluster_id=chr19:5098460..5098559,- | |||
|description=CAGE_peak_1_at_Cnih2_5end | |||
|id=chr19:5098460..5098559,- | |||
|ontology_enrichment_celltype=CL:0000117!5.86e-15!23;CL:0000337!5.86e-15!23;CL:0000221!1.07e-14!44;CL:0000133!1.07e-14!44;CL:0002319!1.48e-14!43;CL:0000540!4.82e-14!33;CL:0000047!4.82e-14!33;CL:0000031!4.82e-14!33;CL:0000404!4.82e-14!33;CL:0000055!1.82e-11!50;CL:0000393!6.92e-11!39;CL:0000211!6.92e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.08e-15,23;CL:0000337,1.08e-15,23;CL:0000221,4.23e-15,44;CL:0000133,4.23e-15,44;CL:0002319,6.01e-15,43;CL:0000540,9.98e-15,33;CL:0000047,9.98e-15,33;CL:0000031,9.98e-15,33;CL:0000404,9.98e-15,33;CL:0000393,2.03e-10,39;CL:0000211,2.03e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.80e-32!73;UBERON:0005743!9.80e-32!73;UBERON:0000073!3.39e-31!75;UBERON:0001016!3.39e-31!75;UBERON:0004121!1.91e-28!102;UBERON:0000924!1.91e-28!102;UBERON:0006601!1.91e-28!102;UBERON:0002346!1.02e-26!71;UBERON:0003075!1.02e-26!71;UBERON:0007284!1.02e-26!71;UBERON:0001049!7.10e-26!52;UBERON:0005068!7.10e-26!52;UBERON:0006241!7.10e-26!52;UBERON:0007135!7.10e-26!52;UBERON:0000955!2.93e-24!50;UBERON:0006238!2.93e-24!50;UBERON:0000033!4.26e-24!63;UBERON:0002616!1.02e-23!49;UBERON:0003056!5.43e-21!49;UBERON:0003080!4.01e-20!40;UBERON:0002020!9.29e-20!34;UBERON:0002780!1.26e-19!39;UBERON:0001890!1.26e-19!39;UBERON:0006240!1.26e-19!39;UBERON:0002791!1.67e-16!29;UBERON:0003528!1.67e-16!29;UBERON:0001893!1.67e-16!29;UBERON:0000153!7.62e-14!94;UBERON:0007811!6.09e-13!86;UBERON:0000956!1.27e-11!21;UBERON:0001869!1.27e-11!21;UBERON:0000203!1.27e-11!21;UBERON:0002619!2.83e-09!17;UBERON:0002021!8.41e-07!10;UBERON:0000411!8.41e-07!10;UBERON:0001950!8.41e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.13e-33,73;UBERON:0001016,1.92e-32,75;UBERON:0004121,2.08e-29,95;UBERON:0000924,2.08e-29,95;UBERON:0006601,2.08e-29,95;UBERON:0000073,1.30e-28,54;UBERON:0002346,1.55e-28,64;UBERON:0003075,1.55e-28,64;UBERON:0007284,1.55e-28,64;UBERON:0001049,3.27e-27,52;UBERON:0005068,3.27e-27,52;UBERON:0006241,3.27e-27,52;UBERON:0007135,3.27e-27,52;UBERON:0010371,6.72e-26,73;UBERON:0000955,1.06e-23,47;UBERON:0006238,1.06e-23,47;UBERON:0002616,3.85e-23,46;UBERON:0003056,4.66e-22,49;UBERON:0003080,3.84e-21,40;UBERON:0002020,9.32e-21,34;UBERON:0002780,1.28e-20,39;UBERON:0001890,1.28e-20,39;UBERON:0006240,1.28e-20,39;UBERON:0010314,1.90e-17,92;UBERON:0003528,2.53e-17,29;UBERON:0002791,2.53e-17,29;UBERON:0001893,2.53e-17,29;UBERON:0000956,3.55e-12,21;UBERON:0001869,3.55e-12,21;UBERON:0000203,3.55e-12,21;UBERON:0002619,1.07e-09,17;UBERON:0002021,4.32e-07,10;UBERON:0000411,4.32e-07,10;UBERON:0001950,4.32e-07,10 | |||
|phase1_expression=25.7839643838718,0.348975407639361,0,0.30246421130683,0,0.33575854382378,0.233612640595526,0.774739940649458,1.54867594366833,2.80877431586392,0.34243593645101,1.27635454392538,0,0,0,0,0,0,0,0,36.2284416043557,0.198581902401771,0,0.159992422793407,0,0,0,0.215471232685889,0.190023419456374,0.252030129759931,0.665191531965914,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,1.1330713617802,0.912392380975631,1.28482726513177,41.4667412504461,4.57852828398938,6.15121311656521,4.47188767870852,7.27929392451885,18.6878333674463,0,0,0,0.514518872071894,0.286533439938757,0.515672092277442,356.683920495471,340.141199671917,313.746544735559,11.5207140903505,8.00365316500025,1.3498495759221,2.96659908770092,1.4209602298922,42.5432156936135,124.870949229505,189.855680136823,182.663034562777,180.038166916783,211.667379443218,168.743565287033,187.16594120045,165.045901093403,165.459381589804,105.711245759413,152.714056349885,139.474732196669,373.8976257151,381.594961465651,293.274227623456,86.5467296904281,142.941702948047,137.212826503575,209.186295686304,168.710441746937,251.825651309981,0.681535739998656,10.0510174942025,0,0.860423876981386,0,0.539703191637817,0,0,5.47733238513832,4.77204903218562,3.63700406444016,3.5333957451034,14.7885590765515,5.13305909657271,2.54805239706646,0,0.216491041011214,0,0,5.82337786567206,0.258937883647172,2.3750742250372,17.3485326766136,10.3518262626128,10.6083128737787,5.42601505989441,7.52567725668511,2.63899841792318,0.247194967734374,0,0,0.808834249737046,0.441683036920787,0,0,33.6697916563279,43.1460216035717,0.510914110417183,0.11981512450592,0,0.127070227073065,90.6233368399177,168.360221837255,365.528510296323,171.738428349969,219.659577846754,148.984027949205,158.185231491064,5.70300437561771,0.373220911830279,0.505445516867349,1.47309299120532,13.7927669540466,25.289231487682,32.5912454947682,19.1395118651358,17.8935992767992,17.5515796790244,24.3624483855295,10.3481348295606,21.3412313003514,18.9106080167819,22.5217438929855,16.4396799320681,10.5657954705727,10.7958171621872,6.1734640922383,11.1459189418356,0,0,0,3.93538967817454,4.22146907965973,3.96136535214233,2.84093682702252,0.983821158737019,1.07986979021165,0.697601834251224,0.804820204198858,0.116765342367169,0,0.164167464079095,0.162137619091711,0,0,0,389.877564637892,304.494748030303,0.330418782983798,0,12.3707185310436,10.4506502337197,7.7320476793256,4.43703754171354,4.89231696458715,4.75564065281398,0,1.64698954724011,2.5133520880027,2.38747766449381,1.75467678407208,0.898819408654221,0.648414149624083,0.398282546508734,16.8804431848243,6.51216521875454,0,3.86937522906097,3.29719228184964,1.1221731182451,1.51767689098217,0,0,0,0,2.50267658574141,2.55526693647164,0.449724224769707,0.405720242777006,0.72353147925725,0.50925170356284,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,11.7484675297701,8.96307370431142,4.2436271443797,1.87752198630802,1.50755631697634,0.476087281772027,0,0.788175720530955,1.32878813789265,0.797273843287435,0,0.345369963731791,0,0,0,0,0.275936746304732,39.9770969069602,36.6872579033596,13.9344703570174,0.504941854408746,6.62567260774139,10.9322848403059,14.6487910458303,2.86762557543062,7.35235624471901,9.34152551603147,4.04810701674894,7.89090816360542,9.48690667071656,109.891890216258,1.84522110770749,9.61554259803178,7.98146100832523,0.164970122972535,0,7.52619972080442,7.55808892411878,5.09233715340925,4.72483028609236,4.61152721915891,3.35956781118687,1.45413491791002,2.85197902707777,0,0,0,6.12791290356818,21.6073312837572,20.6973894052407,28.7211626942334,30.3251799528288,40.6680904132721,38.1753727796921,62.7197795176074,4.22409074514679,0,0.220528398054962,2.80306630000516,1.93757312035087,5.60910201831849,3.70054266409723,4.10352249362653,1.1659233465194,37.6413363081335,0,4.74689796315412,1.85194527369712,0.376736914009382,0.136694227721025,0,0.169978429993855,0.139951452323658,0.138199973804424,0.954670618015114,13.91878371757,9.75933442208874,5.50827238191186,5.43629569637619,3.9305261474312,3.37160865962052,2.31429676030941,0.523511883968059,0.129614973291793,0,1.69107881605257,5.98066184175915,7.61109056102649,7.00024278038572,6.84547064431975,7.43406952159424,2.46450201156083,4.03633593016245,3.35549902162275,1.69108884578204,1.44015003128933,0,6.89265731986558,1.84879722896689,0.77952493786677,1.43221356533985,1.78813219303138,0,0.295379054349154,0.100966449948148,0.228620419965,0.201652370273681,0.194915761479505,0.0962118416403295,0.116876902181569,1.13365191807606,5.54964883435162,6.10054224944435,4.53288464183012,0.386379188064381,0.187682475451182,0.36630324853453,0.214368379079066,0,208.958181768315,208.067006901244,202.232116244107,192.991123771961,147.292741750688,136.726295427536,134.329477546129,118.884797651194,139.114719558151,141.866325419999,20.8612568644195,44.2917609475144,39.6101965349591,30.3883396335368,40.8745667124565,47.9831557054537,21.5579325967567,25.9604172121007,25.6735367673452,26.0278128116711,25.347929989024,32.255104377019,32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| |||
|short_description=p1@Cnih2 | |||
}} |
Revision as of 07:22, 4 August 2015
Short description: | p1@Cnih2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cnih2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -42bp_to_ENSMUST00000025805, NM_009920, uc008gce.1, uc012bgt.1_5end |
EntrezGene: | 12794 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.08e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.08e-15 | 23 |
ectodermal cell | 4.23e-15 | 44 |
neurectodermal cell | 4.23e-15 | 44 |
neural cell | 6.01e-15 | 43 |
neuron | 9.98e-15 | 33 |
neuronal stem cell | 9.98e-15 | 33 |
neuroblast | 9.98e-15 | 33 |
electrically signaling cell | 9.98e-15 | 33 |
electrically responsive cell | 2.03e-10 | 39 |
electrically active cell | 2.03e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.13e-33 | 73 |
nervous system | 1.92e-32 | 75 |
ectoderm-derived structure | 2.08e-29 | 95 |
ectoderm | 2.08e-29 | 95 |
presumptive ectoderm | 2.08e-29 | 95 |
regional part of nervous system | 1.30e-28 | 54 |
neurectoderm | 1.55e-28 | 64 |
neural plate | 1.55e-28 | 64 |
presumptive neural plate | 1.55e-28 | 64 |
neural tube | 3.27e-27 | 52 |
neural rod | 3.27e-27 | 52 |
future spinal cord | 3.27e-27 | 52 |
neural keel | 3.27e-27 | 52 |
ecto-epithelium | 6.72e-26 | 73 |
brain | 1.06e-23 | 47 |
future brain | 1.06e-23 | 47 |
regional part of brain | 3.85e-23 | 46 |
pre-chordal neural plate | 4.66e-22 | 49 |
anterior neural tube | 3.84e-21 | 40 |
gray matter | 9.32e-21 | 34 |
regional part of forebrain | 1.28e-20 | 39 |
forebrain | 1.28e-20 | 39 |
future forebrain | 1.28e-20 | 39 |
structure with developmental contribution from neural crest | 1.90e-17 | 92 |
brain grey matter | 2.53e-17 | 29 |
regional part of telencephalon | 2.53e-17 | 29 |
telencephalon | 2.53e-17 | 29 |
cerebral cortex | 3.55e-12 | 21 |
cerebral hemisphere | 3.55e-12 | 21 |
pallium | 3.55e-12 | 21 |
regional part of cerebral cortex | 1.07e-09 | 17 |
occipital lobe | 4.32e-07 | 10 |
visual cortex | 4.32e-07 | 10 |
neocortex | 4.32e-07 | 10 |