FFCP PHASE1:Mm9::chr4:49493906..49493916,-: Difference between revisions
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{{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=166|UniProt=|association_with_transcript=0bp_to_uc008svs.1_5end|description=CAGE_peak_1_at_uc008svs.1_5end|id=chr4:49493906..49493916,-|ontology_enrichment_celltype=CL:0000066!7.02e-07!25|ontology_enrichment_celltype_v019_2=CL:0000066,2.62e-08,25;CL:0002563,7.37e-08,9;CL:0002251,7.37e-08,9;CL:0000223,3.12e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001007!5.70e-25!128;UBERON:0001555!5.70e-25!128;UBERON:0007026!5.70e-25!128;UBERON:0004119!5.98e-24!130;UBERON:0000925!5.98e-24!130;UBERON:0006595!5.98e-24!130;UBERON:0004921!8.67e-24!126;UBERON:0004185!8.67e-24!126;UBERON:0005409!3.85e-22!59;UBERON:0000160!3.22e-21!43;UBERON:0009854!3.84e-13!23;UBERON:0009856!3.84e-13!23;UBERON:0002107!1.48e-12!22;UBERON:0007499!1.48e-12!22;UBERON:0006925!1.48e-12!22;UBERON:0009497!1.48e-12!22;UBERON:0000015!1.48e-12!22;UBERON:0002423!1.48e-12!22;UBERON:0006235!1.48e-12!22;UBERON:0008835!1.48e-12!22;UBERON:0003894!1.48e-12!22;UBERON:0004161!1.48e-12!22;UBERON:0008836!1.48e-12!22;UBERON:0001041!6.88e-10!92;UBERON:0002365!8.35e-10!25;UBERON:0002330!8.35e-10!25;UBERON:0000344!3.79e-09!15;UBERON:0005911!1.19e-08!69;UBERON:0005177!1.37e-08!85;UBERON:0003929!2.61e-08!55;UBERON:0000077!2.76e-08!97;UBERON:0000949!3.35e-08!72;UBERON:0001242!3.57e-08!13;UBERON:0000060!3.57e-08!13;UBERON:0001262!3.57e-08!13;UBERON:0004786!3.57e-08!13;UBERON:0000466!1.64e-07!79;UBERON:0002108!1.78e-07!16;UBERON:0005172!3.31e-07!49;UBERON:0005173!3.31e-07!49;UBERON:0002417!3.31e-07!49;UBERON:0000916!3.31e-07!49;UBERON:0009569!5.44e-07!66|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.22e-22,31;UBERON:0005409,1.90e-20,47;UBERON:0009854,5.81e-18,23;UBERON:0009856,5.81e-18,23;UBERON:0001007,3.09e-17,116;UBERON:0001555,3.09e-17,116;UBERON:0007026,3.09e-17,116;UBERON:0002107,3.80e-17,22;UBERON:0007499,3.80e-17,22;UBERON:0006925,3.80e-17,22;UBERON:0009497,3.80e-17,22;UBERON:0000015,3.80e-17,22;UBERON:0002423,3.80e-17,22;UBERON:0006235,3.80e-17,22;UBERON:0008835,3.80e-17,22;UBERON:0003894,3.80e-17,22;UBERON:0004161,3.80e-17,22;UBERON:0008836,3.80e-17,22;UBERON:0004119,1.31e-16,118;UBERON:0000925,1.31e-16,118;UBERON:0006595,1.31e-16,118;UBERON:0004921,4.87e-16,114;UBERON:0002365,3.64e-14,25;UBERON:0002330,3.64e-14,25;UBERON:0000344,4.51e-12,15;UBERON:0001242,1.00e-10,13;UBERON:0001262,1.00e-10,13;UBERON:0004786,1.00e-10,13;UBERON:0003929,5.66e-09,55;UBERON:0003350,7.37e-08,9;UBERON:0004808,7.37e-08,9;UBERON:0001277,7.37e-08,9;UBERON:0004923,9.86e-07,24|phase1_expression=0.160148847104794,18.4956966048861,17.7449703361919,9.67885476181856,13.5241847085514,5.54001597309236,3.03696432774183,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,10.239515058778,6.65286915094793,13.2073351746455,17.230479846363,15.9448712187558,10.8313349090133,12.3494763582366,3.76941868114018,0,0,0,9.53210345179206,8.14549762256613,7.9626048942324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122490799214954,0,0,0,0,0,0.131886287730194,0,0,0.279182999001381,0,0,0.294628585473668,0,0,0,0,10.1452571045587,14.6272059086836,3.39985666853875,50.7321000139548,61.0789832400809,33.6020165323002,8.00533194750986,0,0,0,0.281686839553361,0,0,0,0,0.506719730950197,0,14.9580882431969,0,0.148442139064825,0.346970653532272,0,0.230615497256059,0.150722640552623,0.587943535678524,0.376999773989026,3.21353458054686,0,0,0.161766849947409,0,0,11.1835056730873,0,0,8.17462576667492,0,0,0,0,0,0.125654352112864,0,0,0.20778804455956,0,0.101839363850316,0.373220911830279,1.26361379216837,0,0,0,0.180062129805349,0.452114453507145,0.0680364991513279,0,0,0,0,0,0,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.5559137533843,10.0491215332147,0.639864751605702,0,1.80414445850931,6.6555563125703,10.8965241483986,13.1255682017666,10.9141684155238,25.0342411180497,30.6628954736329,25.6653848933085,17.3518037536017,9.88701349519644,18.8040103390984,21.706398784726,0,0,0,0,0,0.350679099451593,0.316182685621286,0.295220295959204,0.627994911365499,1.1105744752962,43.5785361818109,0,1.17935397067922,1.34917267430912,1.62288097110802,2.894125917029,4.07401362850272,9.78166867332756,6.80967952455149,26.907018492432,27.3159592401974,24.5613025461212,62.0954969497976,59.8611940734655,90.5956938285657,52.586343828607,0,0.189491411770485,0,0.339490171550376,0.234690248288502,0.502518772325447,0.238043640886014,0.975668239288994,0.630540576424764,1.7717175171902,0.637819074629948,0.655453258862952,0,0.433947175744535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0.164970122972535,0,0.728341908464944,1.209294227859,4.14931175462976,3.2483208216885,4.91896236710284,9.56184684722418,12.3601468022352,17.1118741624666,6.95280867458795,15.8127912862498,13.4076206222643,0.340439605753788,0,0.129358683782755,0,0.177340233642274,0.178368817602071,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,15.1570035047522,0,0,0,0.185194527369712,0,0.546776910884101,0.457556346413045,0,0,0,4.77335309007557,0,0.813277868507395,3.24016022465404,2.71814784818809,5.67742665740062,6.47348862647139,9.17453358551229,8.63794608547298,22.8122352993555,0,0,0,0,0,0.129159823477731,0,0,0.5208175393758,0,0,0,0,0.202725215290164,0.205421914329655,0.129920822977795,0.179026695667481,0,0.240390899039938,0.295379054349154,0.100966449948148,0.0762068066549998,0.302478555410522,0.292373642219257,0.192423683280659,0,0,0,0,0,0,0.750729901804728,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341467211508268,0.972426868273176,1.04806581313991,1.83843508450014,1.11123363900808,1.03017528619447,0.962757628775446,1.01078884705519,1.2673964994512,1.13175804831646,2.1537546718073,1.40855335290712,1.95280594449085,0,2.0859178670074,1.35036454324594,1.23625770240992,0.588795680537589,2.40008476669791,0.532427418478012,1.66905332963125,1.30811774969096,0.846984423737976,1.26921911837515,1.09756783723664,1.05227884575137,2.58027816307137,2.24456908663095,0.830445126869219,1.18205378850676,0.818462086339379,1.54936841185966,1.73615949883027,0.249810577937946,2.33931608445408,2.57845264857958,0,0.220591419119515,0|short_description=p1@uc008svs.1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=166 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc008svs.1_5end | |||
|cluster_id=chr4:49493906..49493916,- | |||
|description=CAGE_peak_1_at_uc008svs.1_5end | |||
|id=chr4:49493906..49493916,- | |||
|ontology_enrichment_celltype=CL:0000066!7.02e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.62e-08,25;CL:0002563,7.37e-08,9;CL:0002251,7.37e-08,9;CL:0000223,3.12e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!5.70e-25!128;UBERON:0001555!5.70e-25!128;UBERON:0007026!5.70e-25!128;UBERON:0004119!5.98e-24!130;UBERON:0000925!5.98e-24!130;UBERON:0006595!5.98e-24!130;UBERON:0004921!8.67e-24!126;UBERON:0004185!8.67e-24!126;UBERON:0005409!3.85e-22!59;UBERON:0000160!3.22e-21!43;UBERON:0009854!3.84e-13!23;UBERON:0009856!3.84e-13!23;UBERON:0002107!1.48e-12!22;UBERON:0007499!1.48e-12!22;UBERON:0006925!1.48e-12!22;UBERON:0009497!1.48e-12!22;UBERON:0000015!1.48e-12!22;UBERON:0002423!1.48e-12!22;UBERON:0006235!1.48e-12!22;UBERON:0008835!1.48e-12!22;UBERON:0003894!1.48e-12!22;UBERON:0004161!1.48e-12!22;UBERON:0008836!1.48e-12!22;UBERON:0001041!6.88e-10!92;UBERON:0002365!8.35e-10!25;UBERON:0002330!8.35e-10!25;UBERON:0000344!3.79e-09!15;UBERON:0005911!1.19e-08!69;UBERON:0005177!1.37e-08!85;UBERON:0003929!2.61e-08!55;UBERON:0000077!2.76e-08!97;UBERON:0000949!3.35e-08!72;UBERON:0001242!3.57e-08!13;UBERON:0000060!3.57e-08!13;UBERON:0001262!3.57e-08!13;UBERON:0004786!3.57e-08!13;UBERON:0000466!1.64e-07!79;UBERON:0002108!1.78e-07!16;UBERON:0005172!3.31e-07!49;UBERON:0005173!3.31e-07!49;UBERON:0002417!3.31e-07!49;UBERON:0000916!3.31e-07!49;UBERON:0009569!5.44e-07!66 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.22e-22,31;UBERON:0005409,1.90e-20,47;UBERON:0009854,5.81e-18,23;UBERON:0009856,5.81e-18,23;UBERON:0001007,3.09e-17,116;UBERON:0001555,3.09e-17,116;UBERON:0007026,3.09e-17,116;UBERON:0002107,3.80e-17,22;UBERON:0007499,3.80e-17,22;UBERON:0006925,3.80e-17,22;UBERON:0009497,3.80e-17,22;UBERON:0000015,3.80e-17,22;UBERON:0002423,3.80e-17,22;UBERON:0006235,3.80e-17,22;UBERON:0008835,3.80e-17,22;UBERON:0003894,3.80e-17,22;UBERON:0004161,3.80e-17,22;UBERON:0008836,3.80e-17,22;UBERON:0004119,1.31e-16,118;UBERON:0000925,1.31e-16,118;UBERON:0006595,1.31e-16,118;UBERON:0004921,4.87e-16,114;UBERON:0002365,3.64e-14,25;UBERON:0002330,3.64e-14,25;UBERON:0000344,4.51e-12,15;UBERON:0001242,1.00e-10,13;UBERON:0001262,1.00e-10,13;UBERON:0004786,1.00e-10,13;UBERON:0003929,5.66e-09,55;UBERON:0003350,7.37e-08,9;UBERON:0004808,7.37e-08,9;UBERON:0001277,7.37e-08,9;UBERON:0004923,9.86e-07,24 | |||
|phase1_expression=0.160148847104794,18.4956966048861,17.7449703361919,9.67885476181856,13.5241847085514,5.54001597309236,3.03696432774183,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,10.239515058778,6.65286915094793,13.2073351746455,17.230479846363,15.9448712187558,10.8313349090133,12.3494763582366,3.76941868114018,0,0,0,9.53210345179206,8.14549762256613,7.9626048942324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122490799214954,0,0,0,0,0,0.131886287730194,0,0,0.279182999001381,0,0,0.294628585473668,0,0,0,0,10.1452571045587,14.6272059086836,3.39985666853875,50.7321000139548,61.0789832400809,33.6020165323002,8.00533194750986,0,0,0,0.281686839553361,0,0,0,0,0.506719730950197,0,14.9580882431969,0,0.148442139064825,0.346970653532272,0,0.230615497256059,0.150722640552623,0.587943535678524,0.376999773989026,3.21353458054686,0,0,0.161766849947409,0,0,11.1835056730873,0,0,8.17462576667492,0,0,0,0,0,0.125654352112864,0,0,0.20778804455956,0,0.101839363850316,0.373220911830279,1.26361379216837,0,0,0,0.180062129805349,0.452114453507145,0.0680364991513279,0,0,0,0,0,0,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.5559137533843,10.0491215332147,0.639864751605702,0,1.80414445850931,6.6555563125703,10.8965241483986,13.1255682017666,10.9141684155238,25.0342411180497,30.6628954736329,25.6653848933085,17.3518037536017,9.88701349519644,18.8040103390984,21.706398784726,0,0,0,0,0,0.350679099451593,0.316182685621286,0.295220295959204,0.627994911365499,1.1105744752962,43.5785361818109,0,1.17935397067922,1.34917267430912,1.62288097110802,2.894125917029,4.07401362850272,9.78166867332756,6.80967952455149,26.907018492432,27.3159592401974,24.5613025461212,62.0954969497976,59.8611940734655,90.5956938285657,52.586343828607,0,0.189491411770485,0,0.339490171550376,0.234690248288502,0.502518772325447,0.238043640886014,0.975668239288994,0.630540576424764,1.7717175171902,0.637819074629948,0.655453258862952,0,0.433947175744535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0.164970122972535,0,0.728341908464944,1.209294227859,4.14931175462976,3.2483208216885,4.91896236710284,9.56184684722418,12.3601468022352,17.1118741624666,6.95280867458795,15.8127912862498,13.4076206222643,0.340439605753788,0,0.129358683782755,0,0.177340233642274,0.178368817602071,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,15.1570035047522,0,0,0,0.185194527369712,0,0.546776910884101,0.457556346413045,0,0,0,4.77335309007557,0,0.813277868507395,3.24016022465404,2.71814784818809,5.67742665740062,6.47348862647139,9.17453358551229,8.63794608547298,22.8122352993555,0,0,0,0,0,0.129159823477731,0,0,0.5208175393758,0,0,0,0,0.202725215290164,0.205421914329655,0.129920822977795,0.179026695667481,0,0.240390899039938,0.295379054349154,0.100966449948148,0.0762068066549998,0.302478555410522,0.292373642219257,0.192423683280659,0,0,0,0,0,0,0.750729901804728,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341467211508268,0.972426868273176,1.04806581313991,1.83843508450014,1.11123363900808,1.03017528619447,0.962757628775446,1.01078884705519,1.2673964994512,1.13175804831646,2.1537546718073,1.40855335290712,1.95280594449085,0,2.0859178670074,1.35036454324594,1.23625770240992,0.588795680537589,2.40008476669791,0.532427418478012,1.66905332963125,1.30811774969096,0.846984423737976,1.26921911837515,1.09756783723664,1.05227884575137,2.58027816307137,2.24456908663095,0.830445126869219,1.18205378850676,0.818462086339379,1.54936841185966,1.73615949883027,0.249810577937946,2.33931608445408,2.57845264857958,0,0.220591419119515,0 | |||
|short_description=p1@uc008svs.1 | |||
}} |
Latest revision as of 13:56, 5 August 2015
Short description: | p1@uc008svs.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc008svs.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:166 |
Association with transcript: | 0bp_to_uc008svs.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.62e-08 | 25 |
intestinal epithelial cell | 7.37e-08 | 9 |
epithelial cell of alimentary canal | 7.37e-08 | 9 |
endodermal cell | 3.12e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 7.22e-22 | 31 |
gastrointestinal system | 1.90e-20 | 47 |
digestive tract diverticulum | 5.81e-18 | 23 |
sac | 5.81e-18 | 23 |
digestive system | 3.09e-17 | 116 |
digestive tract | 3.09e-17 | 116 |
primitive gut | 3.09e-17 | 116 |
liver | 3.80e-17 | 22 |
epithelial sac | 3.80e-17 | 22 |
digestive gland | 3.80e-17 | 22 |
epithelium of foregut-midgut junction | 3.80e-17 | 22 |
anatomical boundary | 3.80e-17 | 22 |
hepatobiliary system | 3.80e-17 | 22 |
foregut-midgut junction | 3.80e-17 | 22 |
hepatic diverticulum | 3.80e-17 | 22 |
liver primordium | 3.80e-17 | 22 |
septum transversum | 3.80e-17 | 22 |
liver bud | 3.80e-17 | 22 |
endoderm-derived structure | 1.31e-16 | 118 |
endoderm | 1.31e-16 | 118 |
presumptive endoderm | 1.31e-16 | 118 |
subdivision of digestive tract | 4.87e-16 | 114 |
exocrine gland | 3.64e-14 | 25 |
exocrine system | 3.64e-14 | 25 |
mucosa | 4.51e-12 | 15 |
intestinal mucosa | 1.00e-10 | 13 |
wall of intestine | 1.00e-10 | 13 |
gastrointestinal system mucosa | 1.00e-10 | 13 |
gut epithelium | 5.66e-09 | 55 |
epithelium of mucosa | 7.37e-08 | 9 |
gastrointestinal system epithelium | 7.37e-08 | 9 |
intestinal epithelium | 7.37e-08 | 9 |
organ component layer | 9.86e-07 | 24 |