Personal tools

MacroAPE 1083:4-TAAAAAGACAGC

From FANTOM5_SSTAR

Revision as of 12:55, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: 4-TAAAAAGACAGC,BestGuess:MA0277.1_AZF1(0.739253201245228),T:1198.0(22.14%),B:6407.5(14.90%),P:1e-39

Motif matrix
POACGT
1182.096195.274115.008705.622
2862.5662.296152.146120.998
3928.4589.85131.7847.92
41011.11265.8987.45433.544
5924.856130.582111.41431.148
6950.0141.198142.562104.226
7234.808196.472593.01173.71
8950.01482.662107.8257.504
9251.58806.254106.62233.544
101166.8521.1981.19828.752
11180.89819.168924.85673.078
12144.958797.868178.50276.672

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

AZF1#MA0277.1-10.000206650.09836540.1967319TAAAAAGACAGCAAAAAGAAA+
TBP#MA0108.230.001517990.7225630.48170912TAAAAAGACAGCGTATAAAAGGCGGGG+
TBP#MA0108.230.001517990.7225630.48170912TAAAAAGACAGCGTATAAAAGGCGGGG+
Klf4#MA0039.1-20.00848774.04015110TAAAAAGACAGCTAAAGGAAGG+
tll#MA0459.1-20.008800614.18909110TAAAAAGACAGCAAAAGTCAAA+
FOXI1#MA0042.1-10.009314434.43367111TAAAAAGACAGCAAACAAACATCC-
RUNX1#MA0002.2-20.01394656.63855110TAAAAAGACAGCAAACCACAGAC-
squamosa#MA0082.130.01975389.40282111TAAAAAGACAGCCCAAAAATGGAAAT+