Personal tools

MacroAPE 1083:3-GATGATGAT

From FANTOM5_SSTAR

Revision as of 14:01, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: 3-GATGATGAT,CNhs13639,BestGuess:NFE2L1.p2.SwissRegulon.nucfreq(0.64525684730301),T:1253.0(36.79%),B:12578.6(27.32%),P:1e-32

Motif matrix
POACGT
1157.87863.9031024.9546.265
2914.69258.11878.9391.253
3456.0921.2531.253794.402
415.0361.2531235.4581.253
5888.37713.783150.36200.48
6323.274115.276169.155645.295
787.7181.4451082.5921.253
8705.43985.204107.758354.599
9205.492298.214179.179568.862

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

DOT6#MA0351.170.01590367.570119GATGATGATAGGATGCGATGAGGTGCAGAA-
Mafb#MA0117.100.01708158.1307818GATGATGATGCTGACGG+
TOD6#MA0350.170.01872528.9131819GATGATGATAAAACGCGATGAGCTGTGCCT-