Personal tools

NonredundantMotifs:12

From FANTOM5_SSTAR

Revision as of 16:20, 1 May 2013 by Autoedit (talk | contribs)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known12
  • db :HOCOMOCO
  • Id :SP3_f1
  • name  :
  • score :5.013317861704715
  • External refs:
EntrezGene:6670
UniProt:6670

  • Internal refs:
EntrezGene:6670


Motif matrix
{{{PWM}}}

Sub Motif Members