Personal tools

UBERON:0001008

From FANTOM5_SSTAR

Revision as of 17:14, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:renal system
Namespace:FANTOM
Definition:"The excretory system is the system of an organism that mainly performs the function of excretion, the bodily process of discharging wastes. It is responsible for the elimination of wastes produced by the processes that maintain homeostasis." [BILA:0000015, Wikipedia:Excretory_system]
Xrefs:
links:

AAO:0010257
BILA:0000015
BTO:0001244
BTO:0003092
EFO:0000803
EHDAA2:0001601
EHDAA:5901
EMAPA:17366
EV:0100095
FBbt:00005056
FMA:7159
GAID:391
galen:UrinaryTract
MA:0000325
MAT:0000027
MESH:A.05.810
MIAA:0000027
ncithesaurus:Urinary_System
SCTID:362204003
TADS:0000162
TAO:0000163
VHOG:0000723
WBbt:0005736
XAO:0000143

ZFA:0000163
Synonyms: "renal or urinary system" RELATED [EHDAA:5901]
"renal system" EXACT [GO:0001977]
"renal/urinary system" RELATED []
"systema urinaria" EXACT [FMA:7159]
"systema urinarium" EXACT [BTO:0003092]
"urinary system" EXACT []
"urinary tract" EXACT []
Comments:In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here
Alt_id: UBERON:FBbt_00005056-FMA_7159-MIAA_0000027-WBbt_0005736-XAO_0000143-ZFA_0000163
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000467(anatomical system)
disjoint_from:UBERON:0001009(circulatory system),UBERON:0001016(nervous system),UBERON:0001033(gustatory system),UBERON:0001434(skeletal system),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system)



Children

disjoint from:UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system)
part of:UBERON:0000163 (embryonic cloaca),UBERON:0000164 (primitive urogenital sinus),UBERON:0000365 (urothelium),UBERON:0001556 (lower urinary tract),UBERON:0004340 (allantois),UBERON:0006554 (urinary system structure),UBERON:0006555 (excretory tube),UBERON:0009773 (renal tubule),UBERON:0011143 (upper urinary tract)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001008 (renal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.12e-59FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_a20ef42cae17083d0b6875e50dcf99f2p6@Hoxd8
5.12e-59FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_a20ef42cae17083d0b6875e50dcf99f2p6@Hoxd8
1.68e-54FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_f9b9e098738b0a4e0f6ff7b3804ec236p8@Hoxd8
1.68e-54FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_f9b9e098738b0a4e0f6ff7b3804ec236p8@Hoxd8
5.23e-50FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_c4757b8f73a2b561cdd86dcecb2f1beap@chr19:44824107..44824111, -
5.23e-50FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_c4757b8f73a2b561cdd86dcecb2f1beap@chr19:44824107..44824111, -
3.33e-48FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_87a1bcb34538e1ad7314044b82d4e1b6p5@Cldn8
3.33e-48FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_87a1bcb34538e1ad7314044b82d4e1b6p5@Cldn8
3.76e-46FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_0b4b35990f0dc2601003294a26f59fd2p4@PAX2
3.76e-46FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_0b4b35990f0dc2601003294a26f59fd2p4@PAX2
5.92e-46FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_f4c4ea2a5dbaa38e8b8ff17f8fb868b4p@chr10:3291561..3291580, +
5.92e-46FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_f4c4ea2a5dbaa38e8b8ff17f8fb868b4p@chr10:3291561..3291580, +
1.55e-45FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_29d5c98e3dd3ad26e62625c8c4836c5fp@chr19:44821149..44821161, +
1.55e-45FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_29d5c98e3dd3ad26e62625c8c4836c5fp@chr19:44899724..44899728, +
1.55e-45FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_29d5c98e3dd3ad26e62625c8c4836c5fp@chr19:44821149..44821161, +
1.55e-45FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_29d5c98e3dd3ad26e62625c8c4836c5fp@chr19:44899724..44899728, +
1.11e-43FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_95e3952f146b43dc095ea4f6920c7190p@chr8:107148422..107148433, +
1.11e-43FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_95e3952f146b43dc095ea4f6920c7190p@chr8:107148422..107148433, +
5.28e-43FFCP PHASE2:Mm9::chr16:88563264..88563271,-#_5c02bb6a160d1f2eda18b0d4a1ecf872p@chr16:88563264..88563271, -
5.28e-43FFCP PHASE1:Mm9::chr16:88563264..88563271,-#_5c02bb6a160d1f2eda18b0d4a1ecf872p@chr16:88563264..88563271, -
1.67e-42FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_073e811affac53c60c2e1cf0c7ac6038p5@Scp2
1.67e-42FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_073e811affac53c60c2e1cf0c7ac6038p5@Scp2
1.75e-42FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_2c5ec7d6bb2232619b8ff69d531e67cap@chr10:50689167..50689171, +
1.75e-42FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_2c5ec7d6bb2232619b8ff69d531e67cap@chr10:50689167..50689171, +
1.92e-42FFCP PHASE1:Mm9::chr19:44821081..44821112,+#_d6f77d8a695ac61a8c890a702f9e9bbap@chr19:44821081..44821112, +
1.92e-42FFCP PHASE2:Mm9::chr19:44821081..44821112,+#_d6f77d8a695ac61a8c890a702f9e9bbap@chr19:44821081..44821112, +
2.1e-42FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_2228f77f1c1c2d36e8e7cd814ea748a6p@chr5:24755801..24755819, +
2.1e-42FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_2228f77f1c1c2d36e8e7cd814ea748a6p@chr5:24755801..24755819, +
2.53e-42FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_ec5ec8661a4e0ca738972401ff1c107dp@chr19:59532611..59532623, +
2.53e-42FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_ec5ec8661a4e0ca738972401ff1c107dp@chr19:59532611..59532623, +
1.89e-41FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_78a9e20db04d278452febdeb0218b951p1@ENSMUST00000154177
1.89e-41FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_78a9e20db04d278452febdeb0218b951p1@ENSMUST00000154177
2.09e-41FFCP PHASE2:Mm9::chr12:80169429..80169447,-#_9ed02a364468ab131f31830c3e3f6a3bp@chr12:80169429..80169447, -
2.09e-41FFCP PHASE1:Mm9::chr12:80169429..80169447,-#_9ed02a364468ab131f31830c3e3f6a3bp@chr12:80169429..80169447, -
4.4e-41FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_03ede2828cc2a987f96017aec8421ffep@chr2:74971765..74971779, -
4.4e-41FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_03ede2828cc2a987f96017aec8421ffep2@Nphs1
4.4e-41FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_03ede2828cc2a987f96017aec8421ffep@chr19:17554168..17554181, +
4.4e-41FFCP PHASE2:Mm9::chr19:44821208..44821217,+#_03ede2828cc2a987f96017aec8421ffep@chr19:44821208..44821217, +
4.4e-41FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_03ede2828cc2a987f96017aec8421ffep7@Steap2
4.4e-41FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_03ede2828cc2a987f96017aec8421ffep@chr10:50622895..50622905, +
4.4e-41FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_03ede2828cc2a987f96017aec8421ffep@chr10:39251651..39251690, +
4.4e-41FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_03ede2828cc2a987f96017aec8421ffep@chr8:118959620..118959632, -
4.4e-41FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_03ede2828cc2a987f96017aec8421ffep@chr19:17554168..17554181, +
4.4e-41FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_03ede2828cc2a987f96017aec8421ffep@chr2:74971765..74971779, -
4.4e-41FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_03ede2828cc2a987f96017aec8421ffep@chr10:79277411..79277429, +
4.4e-41FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_03ede2828cc2a987f96017aec8421ffep4@Ros1
4.4e-41FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_03ede2828cc2a987f96017aec8421ffep2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
4.4e-41FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_03ede2828cc2a987f96017aec8421ffep2@Nphs1
4.4e-41FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_03ede2828cc2a987f96017aec8421ffep@chr7:47891824..47891827, -
4.4e-41FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_03ede2828cc2a987f96017aec8421ffep@chr10:79277411..79277429, +
4.4e-41FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_03ede2828cc2a987f96017aec8421ffep7@Steap2
4.4e-41FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_03ede2828cc2a987f96017aec8421ffep3@uc009jll.1
4.4e-41FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_03ede2828cc2a987f96017aec8421ffep3@uc009jll.1
4.4e-41FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_03ede2828cc2a987f96017aec8421ffep@chr7:47891824..47891827, -
4.4e-41FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_03ede2828cc2a987f96017aec8421ffep@chr10:39251651..39251690, +
4.4e-41FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_03ede2828cc2a987f96017aec8421ffep4@Ros1
4.4e-41FFCP PHASE1:Mm9::chr19:44821208..44821217,+#_03ede2828cc2a987f96017aec8421ffep@chr19:44821208..44821217, +
4.4e-41FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_03ede2828cc2a987f96017aec8421ffep2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
4.4e-41FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_03ede2828cc2a987f96017aec8421ffep@chr10:50622895..50622905, +
4.4e-41FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_03ede2828cc2a987f96017aec8421ffep@chr8:118959620..118959632, -
2.95e-40FFCP PHASE1:Mm9::chr2:9809451..9809469,-#_515aee19cc7c71f2f7c2f6d563f4bc13p6@Gata3
2.95e-40FFCP PHASE2:Mm9::chr2:9809451..9809469,-#_515aee19cc7c71f2f7c2f6d563f4bc13p6@Gata3
7.78e-40FFCP PHASE1:Mm9::chr18:84819316..84819345,-#_b7d74d5275c2a69170eb4759c8bb1df7p1@Cndp1
7.78e-40FFCP PHASE2:Mm9::chr18:84819316..84819345,-#_b7d74d5275c2a69170eb4759c8bb1df7p1@Cndp1
2.26e-39FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_1995ea7c78915f38ec4bf929a9deaa0dp7@HOXA10
2.26e-39FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_1995ea7c78915f38ec4bf929a9deaa0dp7@HOXA10
2.66e-38FFCP PHASE1:Mm9::chr16:88563375..88563386,-#_2236afdf5ceb828d5e6ad33fb3ec921fp4@Cldn8
2.66e-38FFCP PHASE2:Mm9::chr16:88563375..88563386,-#_2236afdf5ceb828d5e6ad33fb3ec921fp4@Cldn8
2.89e-38FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_272db9192addd94f4dbec788d4d86463p3@PAX2
2.89e-38FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_272db9192addd94f4dbec788d4d86463p3@PAX2
4.03e-38FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_b495886862a327e27f2f73c10ac457c6p@chr11:75720190..75720216, -
4.03e-38FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_b495886862a327e27f2f73c10ac457c6p@chr11:75720190..75720216, -
4.41e-38FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_736e9ad9e9475eb17e9e85236311316fp3@2810008M24Rik
4.41e-38FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_736e9ad9e9475eb17e9e85236311316fp3@2810008M24Rik
5.28e-38FFCP PHASE2:Mm9::chr14:30665533..30665556,-#_069d5d360f0de05b77ba858c745f15b7p@chr14:30665533..30665556, -
5.28e-38FFCP PHASE1:Mm9::chr14:30665533..30665556,-#_069d5d360f0de05b77ba858c745f15b7p@chr14:30665533..30665556, -
8.29e-38FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_1087c22fffa1324164bf0069f89a0435p1@ENSMUST00000143898
8.29e-38FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_1087c22fffa1324164bf0069f89a0435p1@ENSMUST00000143898
1.77e-37FFCP PHASE1:Mm9::chr2:24331116..24331125,-#_d6f34a161cd4c574afd73ba3921da530p2@Pax8
1.77e-37FFCP PHASE2:Mm9::chr2:24331116..24331125,-#_d6f34a161cd4c574afd73ba3921da530p2@Pax8
2.59e-37FFCP PHASE2:Hg19::chr2:693380..693398,+#_a99393540cff09f78a1c304109e713ccp@chr2:693380..693398, +
2.59e-37FFCP PHASE1:Hg19::chr2:693380..693398,+#_a99393540cff09f78a1c304109e713ccp@chr2:693380..693398, +
4.67e-37FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_53f5dd72050ed2a842a9b807f4ed368cp@chr10:12353875..12353921, -
4.67e-37FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_53f5dd72050ed2a842a9b807f4ed368cp@chr3:154257229..154257241, -
4.67e-37FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_53f5dd72050ed2a842a9b807f4ed368cp4@Nphs1
4.67e-37FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_53f5dd72050ed2a842a9b807f4ed368cp@chr3:154257229..154257241, -
4.67e-37FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_53f5dd72050ed2a842a9b807f4ed368cp@chr10:12353875..12353921, -
4.67e-37FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_53f5dd72050ed2a842a9b807f4ed368cp2@uc009jll.1
4.67e-37FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_53f5dd72050ed2a842a9b807f4ed368cp4@Nphs1
4.67e-37FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_53f5dd72050ed2a842a9b807f4ed368cp2@uc009jll.1
6.25e-37FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_eb547fba280fca7f74968eb0082b3fb0p@chr10:3291584..3291599, +
6.25e-37FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_eb547fba280fca7f74968eb0082b3fb0p@chr10:3291584..3291599, +
6.33e-37FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_0d5e41b4a2162e79a369673fbdabc7d0p4@Pdzk1
6.33e-37FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_0d5e41b4a2162e79a369673fbdabc7d0p4@Pdzk1
8.04e-37FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_adca8462c01f6f343da36170db29bd17p8@Rgnef
8.04e-37FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_adca8462c01f6f343da36170db29bd17p8@Rgnef
9.21e-37FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_6bc2b1cdd976917cfa69bf949134a07ap9@Ppt2
9.21e-37FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_6bc2b1cdd976917cfa69bf949134a07ap9@Ppt2
1.19e-36FFCP PHASE2:Mm9::chr2:152447861..152447872,-#_68b8372616cbc68071e05ab46e680b84p@chr2:152447861..152447872, -
1.19e-36FFCP PHASE2:Mm9::chr2:124984656..124984673,+#_68b8372616cbc68071e05ab46e680b84p@chr2:124984656..124984673, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "An anatomical system which consists of organs and tissues which produce, store, and excrete urine.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001008&oldid=3277173"