Main Page

FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in the FANTOM5 project. If you have any questions or comments, please contact to fantom-help@riken.jp

 

Search genes
		Examples	Browse
Time courses	Promoters and enhancers activity in 19 human and 14 mouse time courses covering a wide range of cell types and biological stimuli	Human iPS to neuron (Down's syndrome)	Timecourses chart
Samples	Details of profiled samples (incl. primary cells, cell lines, and tissues)	Smooth Muscle Cells - Aortic, donor0	human mouse
Sample classifications	Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology (FF), consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON).	smooth muscle cell	Cell Type (CL) Disease (DOID) Anatomy (UBERON) FANTOM5 (FF)
Co-expression	CAGE peaks (TSS regions) are grouped based on expression, by using MCL	C18 (in human)	Human Mouse
Motifs	known and de-novo motifs discovered in the proximal region to the CAGE peaks	Novel_motif:1 RUNX1	Novel motifs JASPAR motifs
Transcription factors	Transcription factors.	SOX2	human mouse

Please cite SSTAR as:

Abugessaisa, I., H. Shimoji, S. Sahin, A. Kondo, J. Harshbarger, M. Lizio, Y. Hayashizaki, P. Carninci, F. consortium, A. Forrest, T. Kasukawa and H. Kawaji (2016). "FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki." Database (Oxford) 2016