View source for FF:1385-42H1

{{f5samples
|id=FF:1385-42H1
|name=kidney, neonate N30, biol_rep1
|sample_id=1385
|rna_tube_id=1385-42H1
|rna_box=1385-42H1
|rna_position=1385-42H1
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Mouse (Mus musculus)
|sample_strain=C57BL/6J
|sample_dev_stage=30 days neonate
|sample_tissue=kidney
|sample_donor(cell lot)=
|sample_sex=mixture
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=
|rna_weight_ug=
|rna_concentration=
|sample_note=
|profile_hcage=CNhs11203,LSID747,,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000489,UBERON:0000916,UBERON:0000922,UBERON:0001008,UBERON:0001062,UBERON:0002100,UBERON:0002113,UBERON:0002417,UBERON:0003103,UBERON:0005095,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005423,UBERON:0006554,UBERON:0007687
|ancestors_in_disease_facet=
|sample_description=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cellprecursor=
|fonse_cellprecursor_closure=
|fonse_developsfrom=
|fonse_developsfrom_closure=
|fonse_disease=
|fonse_disease_closure=
|fonse_isa=EFO:0002091,FF:0011483
|fonse_isa_closure=EFO:0000001,EFO:0000683,EFO:0002091,FF:0000001,FF:0000004,FF:0000101,FF:0000102,FF:0000103,FF:0000303,FF:0000310,FF:0011483,FF:1385-42H1,UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000489,UBERON:0001062,UBERON:0002113,UBERON:0003103,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0006554,snap:Role,snap:SpecificallyDependentContinuant
|fonse_location=FF:0011483,UBERON:0000479,UBERON:0000916,UBERON:0001008
|fonse_location_closure=FF:0011483,UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000489,UBERON:0000916,UBERON:0001008,UBERON:0001062,UBERON:0002100,UBERON:0002113,UBERON:0002417,UBERON:0003103,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0006554
|fonse_organ=
|fonse_organ_closure=UBERON:0000489,UBERON:0002113,UBERON:0003103,UBERON:0005172,UBERON:0005173,UBERON:0005177
|fonse_organismsubdivision=UBERON:0000916
|fonse_organismsubdivision_closure=UBERON:0000916,UBERON:0002100,UBERON:0002417
|fonse_sampletype=FF:0000004
|fonse_sampletype_closure=FF:0000004
|fonse_stage=
|fonse_stage_closure=
|fonse_system=UBERON:0001008
|fonse_system_closure=UBERON:0001008
|fonse_taxon=FF:0000103
|fonse_taxon_closure=FF:0000103
|fonse_treatment=
|fonse_treatment_closure=
|top_motifs=ESRRA:2.87624340785;NFIX:2.81667526269;SREBF1,2:2.60710312067;HNF1A:2.56329478636;AR:2.04378904882;FOXQ1:1.8927015301;HNF4A_NR2F1,2:1.87131204092;NFIL3:1.80669287571;NR5A1,2:1.55720079236;RXR{A,B,G}:1.51548704714;FOX{D1,D2}:1.32888439559;PAX5:1.23399122717;BPTF:1.12265676049;SP1:1.06991826648;NR1H4:1.06269168705;FOXN1:1.04481126794;FOXO1,3,4:1.03617160793;SNAI1..3:1.01299188419;STAT1,3:0.983136915845;ADNP_IRX_SIX_ZHX:0.96837409137;TP53:0.966633026509;bHLH_family:0.955349705608;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.934711313183;T:0.87955603074;PAX6:0.870836258416;TFCP2:0.8174079474;NANOG{mouse}:0.742642163883;NFE2:0.72981295496;TEAD1:0.71677217037;ONECUT1,2:0.716005116698;FOX{I1,J2}:0.696714597598;PPARG:0.679924370467;TLX1..3_NFIC{dimer}:0.629385370597;GTF2A1,2:0.597960922618;TEF:0.596322783388;ESR1:0.563541359186;TFAP2{A,C}:0.563330931006;ZEB1:0.533906896413;EBF1:0.511487597358;XCPE1{core}:0.503594359399;PBX1:0.496094851166;SOX5:0.470802565123;RXRA_VDR{dimer}:0.436472941407;PRRX1,2:0.430873466816;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.357591683929;NKX2-3_NKX2-5:0.313241714531;ZBTB6:0.308970154376;NR6A1:0.287451228618;ELF1,2,4:0.235158450513;TFAP4:0.234120965713;STAT2,4,6:0.224997617995;YY1:0.213451782707;NFE2L2:0.206819903444;DMAP1_NCOR{1,2}_SMARC:0.205358145528;PAX2:0.204460639588;NFATC1..3:0.166923018578;ATF4:0.14626404627;FOXA2:0.129757607549;NKX3-1:0.105029466979;VSX1,2:0.0581029918868;MYBL2:0.0568452256463;IRF1,2:0.0529571083582;HAND1,2:0.051312174399;TOPORS:0.0463312914342;MAFB:0.041867558191;MAZ:0.0123953016289;CEBPA,B_DDIT3:0.0045510613826;FOXD3:-0.00769242333183;MYOD1:-0.0114980789458;GTF2I:-0.0152649739621;FOSL2:-0.0320777288223;IKZF1:-0.0390635974182;POU6F1:-0.0427401591318;GCM1,2:-0.0563609252377;ELK1,4_GABP{A,B1}:-0.0792462017063;GFI1B:-0.0805308476465;FOXM1:-0.100224854387;ARID5B:-0.101570737857;TFAP2B:-0.104012434446;FOXP1:-0.105516836289;HIC1:-0.108441289844;GZF1:-0.108875035163;RORA:-0.115890464978;HIF1A:-0.135594379955;NFKB1_REL_RELA:-0.145062496929;NFE2L1:-0.182412489122;HBP1_HMGB_SSRP1_UBTF:-0.195084136776;ETS1,2:-0.222040305906;DBP:-0.241244079671;BACH2:-0.256660352621;RFX1:-0.260634544065;ZNF143:-0.26485748683;IKZF2:-0.296588089484;PATZ1:-0.3123782355;CREB1:-0.324302990559;NFY{A,B,C}:-0.333237156619;NRF1:-0.344550649408;GFI1:-0.370171868685;TBX4,5:-0.370824634816;HOXA9_MEIS1:-0.398000928933;CUX2:-0.398911499339;MYFfamily:-0.429844869995;ZBTB16:-0.438357116463;IRF7:-0.438838333496;MEF2{A,B,C,D}:-0.440237716837;NKX2-1,4:-0.440481447771;MED-1{core}:-0.442742871154;CDX1,2,4:-0.464983487154;EVI1:-0.472560176235;MTE{core}:-0.475959444954;TGIF1:-0.489400181785;ZFP161:-0.497711937675;SPIB:-0.509666068521;SPI1:-0.51112299866;HSF1,2:-0.528588964683;STAT5{A,B}:-0.535339145895;REST:-0.540900946803;RUNX1..3:-0.549366190949;KLF4:-0.555147737166;ATF5_CREB3:-0.582115272327;ZNF423:-0.597939822578;PDX1:-0.608587115801;MTF1:-0.612141606697;FOXP3:-0.618383821324;ZNF384:-0.635854033101;RREB1:-0.636279021689;ZNF238:-0.638257965215;HMX1:-0.639237116346;SRF:-0.652037255024;TBP:-0.658170535351;BREu{core}:-0.660594672973;ATF2:-0.680098596662;MZF1:-0.689655332754;AHR_ARNT_ARNT2:-0.7078245675;NKX6-1,2:-0.716761730634;LMO2:-0.718930433717;MYB:-0.731159670986;FOS_FOS{B,L1}_JUN{B,D}:-0.7535574455;ATF6:-0.758932411851;RBPJ:-0.771272295188;NHLH1,2:-0.774402635937;SPZ1:-0.792610378589;RFX2..5_RFXANK_RFXAP:-0.805216573418;EP300:-0.810939505882;EGR1..3:-0.828220750095;HOX{A5,B5}:-0.841979637595;GATA6:-0.853503844324;HMGA1,2:-0.860067067003;CDC5L:-0.874297612891;PITX1..3:-0.881860291239;LEF1_TCF7_TCF7L1,2:-0.896915366056;PAX1,9:-0.905501454893;SOX2:-0.919840897737;NR3C1:-0.933091509011;HLF:-0.971278161811;SOX{8,9,10}:-0.974818001654;UFEwm:-0.985218901737;POU5F1:-1.01492365271;GLI1..3:-1.01942767614;ALX1:-1.01969541578;JUN:-1.03713554153;SMAD1..7,9:-1.04393914504;POU2F1..3:-1.077665167;NKX3-2:-1.08245150901;CRX:-1.0885949628;LHX3,4:-1.08967690958;PRDM1:-1.15503355526;POU3F1..4:-1.16184311348;SOX17:-1.1947503044;E2F1..5:-1.20014877992;FOX{F1,F2,J1}:-1.22841568662;PAX4:-1.2462457779;EN1,2:-1.25529420839;TFDP1:-1.26853807265;OCT4_SOX2{dimer}:-1.271113766;ALX4:-1.36464865181;GATA4:-1.37438333039;PAX8:-1.37866863311;NANOG:-1.39267039402;TAL1_TCF{3,4,12}:-1.47244212501;AIRE:-1.5078592448;HES1:-1.50931028266;TLX2:-1.51225810909;ZIC1..3:-1.65554211952;ZNF148:-1.77495517685;HOX{A4,D4}:-1.7856379755;FOXL1:-2.01350030446;POU1F1:-2.20175442075;NKX2-2,8:-2.31586851882
}}