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{{Coexpression_clusters
{{Coexpression_clusters
|full_id=C93_chronic_acute_leukemia_acantholytic_medulloblastoma_testis_papillotubular
|full_id=C93_chronic_acute_leukemia_acantholytic_medulloblastoma_testis_papillotubular
|gostat_on_coexpression_clusters=GO:0005344!oxygen transporter activity!0.0283369321172339!3050;3046$GO:0005833!hemoglobin complex!0.0283369321172339!3050;3046$GO:0015671!oxygen transport!0.0283369321172339!3050;3046$GO:0015669!gas transport!0.0283369321172339!3050;3046$GO:0007259!JAK-STAT cascade!0.0337650888844149!6774;6776$GO:0019221!cytokine and chemokine mediated signaling pathway!0.034230002126629!6774;6776
|id=C93
|id=C93
}}
}}

Revision as of 17:42, 18 May 2012


Full id: C93_chronic_acute_leukemia_acantholytic_medulloblastoma_testis_papillotubular



Phase1 CAGE Peaks

Hg19::chr10:11927830..11927841,-p@chr10:11927830..11927841
-
Hg19::chr10:11940545..11940575,-p@chr10:11940545..11940575
-
Hg19::chr10:52316698..52316713,+p@chr10:52316698..52316713
+
Hg19::chr10:5522516..5522528,-p@chr10:5522516..5522528
-
Hg19::chr11:1372935..1372952,+p@chr11:1372935..1372952
+
Hg19::chr11:5150823..5150837,+p@chr11:5150823..5150837
+
Hg19::chr11:5291163..5291182,-p1@HBE1
Hg19::chr11:5526872..5526884,-p1@OR51B5
p2@HBE1
Hg19::chr11:85820536..85820567,+p1@BC016696
Hg19::chr11:85820575..85820593,+p2@BC016696
Hg19::chr12:23874396..23874433,-p@chr12:23874396..23874433
-
Hg19::chr12:23874501..23874508,-p@chr12:23874501..23874508
-
Hg19::chr12:31868671..31868685,+p@chr12:31868671..31868685
+
Hg19::chr14:102176584..102176593,-p@chr14:102176584..102176593
-
Hg19::chr14:37641855..37641867,-p5@SLC25A21
Hg19::chr14:76724603..76724631,+p@chr14:76724603..76724631
+
Hg19::chr15:34949928..34949947,+p@chr15:34949928..34949947
+
Hg19::chr15:34950041..34950071,+p@chr15:34950041..34950071
+
Hg19::chr15:34950105..34950148,+p@chr15:34950105..34950148
+
Hg19::chr15:83838027..83838034,-p@chr15:83838027..83838034
-
Hg19::chr15:91192144..91192162,+p@chr15:91192144..91192162
+
Hg19::chr15:96679063..96679075,-p@chr15:96679063..96679075
-
Hg19::chr16:11332670..11332681,+p@chr16:11332670..11332681
+
Hg19::chr16:202637..202675,+p2@HBZ
Hg19::chr16:54908072..54908081,-p@chr16:54908072..54908081
-
Hg19::chr16:9085975..9085982,+p@chr16:9085975..9085982
+
Hg19::chr17:40427641..40427655,-p@chr17:40427641..40427655
-
Hg19::chr17:40441330..40441344,+p9@STAT5A
Hg19::chr17:40441354..40441410,+p2@STAT5A
Hg19::chr17:40441412..40441419,+p20@STAT5A
Hg19::chr17:40469366..40469383,-p17@STAT3
Hg19::chr17:40469457..40469494,-p14@STAT3
Hg19::chr17:40469520..40469532,-p12@STAT3
Hg19::chr17:40471984..40472008,-p@chr17:40471984..40472008
-
Hg19::chr17:40472023..40472044,-p@chr17:40472023..40472044
-
Hg19::chr17:40472047..40472059,-p@chr17:40472047..40472059
-
Hg19::chr17:46708584..46708599,-p@chr17:46708584..46708599
-
Hg19::chr18:813221..813236,-p@chr18:813221..813236
-
Hg19::chr18:8913991..8914004,+p@chr18:8913991..8914004
+
Hg19::chr18:9812085..9812091,-p@chr18:9812085..9812091
-
Hg19::chr19:29035609..29035622,-p@chr19:29035609..29035622
-
Hg19::chr19:29037236..29037241,-p@chr19:29037236..29037241
-
Hg19::chr19:38806165..38806183,-p@chr19:38806165..38806183
-
Hg19::chr19:49651648..49651655,+p@chr19:49651648..49651655
+
Hg19::chr19:50878292..50878316,+p@chr19:50878292..50878316
+
Hg19::chr19:55549773..55549784,-p3@GP6
Hg19::chr19:917090..917103,-p@chr19:917090..917103
-
Hg19::chr19:917115..917124,-p@chr19:917115..917124
-
Hg19::chr1:100828693..100828719,+p@chr1:100828693..100828719
+
Hg19::chr1:12717632..12717640,-p@chr1:12717632..12717640
-
Hg19::chr1:144995002..144995057,-p11@PDE4DIP
Hg19::chr1:144995074..144995085,-p21@PDE4DIP
Hg19::chr1:146369648..146369656,-p@chr1:146369648..146369656
-
Hg19::chr1:15104171..15104180,-p@chr1:15104171..15104180
-
Hg19::chr1:15104189..15104213,-p@chr1:15104189..15104213
-
Hg19::chr1:155271191..155271202,-p4@PKLR
Hg19::chr1:155271213..155271234,-p2@PKLR
Hg19::chr1:156883474..156883490,+p4@PEAR1
Hg19::chr1:161132076..161132086,+p7@USP21
Hg19::chr1:194616937..194616943,-p@chr1:194616937..194616943
-
Hg19::chr1:244530412..244530450,+p@chr1:244530412..244530450
+
Hg19::chr1:246151834..246151867,-p4@SMYD3
Hg19::chr1:65946781..65946791,-p@chr1:65946781..65946791
-
Hg19::chr20:56100155..56100163,-p2@CTCFL
Hg19::chr21:16125690..16125700,-p3@ENST00000454128
Hg19::chr21:16126130..16126154,-p2@ENST00000455253
Hg19::chr21:16126181..16126192,-p4@ENST00000455253
Hg19::chr21:22519416..22519487,+p4@NCAM2
Hg19::chr21:25263242..25263269,+p@chr21:25263242..25263269
+
Hg19::chr22:20105259..20105283,+p3@RANBP1
Hg19::chr22:21213287..21213304,+p3@SNAP29
Hg19::chr22:22900001..22900057,-p2@PRAME
Hg19::chr22:22901399..22901408,-p6@PRAME
Hg19::chr22:22901414..22901437,-p3@PRAME
Hg19::chr22:22901442..22901461,-p5@PRAME
Hg19::chr22:22901477..22901499,-p4@PRAME
Hg19::chr22:22901636..22901715,-p1@PRAME
Hg19::chr2:158115255..158115266,+p13@GALNT5
Hg19::chr2:168797676..168797690,-p1@ENST00000436982
Hg19::chr2:201754233..201754242,+p4@NIF3L1
Hg19::chr2:76157615..76157618,+p@chr2:76157615..76157618
+
Hg19::chr2:97559771..97559781,-p@chr2:97559771..97559781
-
Hg19::chr2:97560860..97560872,-p3@FAM178B
Hg19::chr2:97560893..97560910,-p4@FAM178B
Hg19::chr2:97587795..97587801,-p@chr2:97587795..97587801
-
Hg19::chr2:97595058..97595091,-p@chr2:97595058..97595091
-
Hg19::chr3:101351334..101351339,+p@chr3:101351334..101351339
+
Hg19::chr3:132029141..132029151,+p@chr3:132029141..132029151
+
Hg19::chr3:14294399..14294412,-p@chr3:14294399..14294412
-
Hg19::chr3:195870209..195870220,-p@chr3:195870209..195870220
-
Hg19::chr3:33978063..33978070,+p@chr3:33978063..33978070
+
Hg19::chr3:38060516..38060530,-p10@PLCD1
Hg19::chr3:38060540..38060563,-p7@PLCD1
Hg19::chr3:38060565..38060575,-p13@PLCD1
Hg19::chr3:38060580..38060593,-p14@PLCD1
Hg19::chr3:60263284..60263305,-p@chr3:60263284..60263305
-
Hg19::chr4:10187460..10187471,-p@chr4:10187460..10187471
-
Hg19::chr4:10187482..10187491,-p@chr4:10187482..10187491
-
Hg19::chr4:10187518..10187525,-p@chr4:10187518..10187525
-
Hg19::chr4:127656623..127656632,-p@chr4:127656623..127656632
-
Hg19::chr4:127656639..127656648,-p@chr4:127656639..127656648
-
Hg19::chr4:127877220..127877225,+p@chr4:127877220..127877225
+
Hg19::chr4:187680261..187680278,-p@chr4:187680261..187680278
-
Hg19::chr4:56502502..56502513,-p2@NMU
Hg19::chr5:53609450..53609488,+p@chr5:53609450..53609488
+
Hg19::chr5:54034050..54034065,-p@chr5:54034050..54034065
-
Hg19::chr5:89953953..89953970,+p@chr5:89953953..89953970
+
Hg19::chr6:13678786..13678795,+p@chr6:13678786..13678795
+
Hg19::chr6:16266026..16266031,+p@chr6:16266026..16266031
+
Hg19::chr6:16267990..16268002,-p@chr6:16267990..16268002
-
Hg19::chr6:164749433..164749438,-p@chr6:164749433..164749438
-
Hg19::chr6:164759144..164759155,-p@chr6:164759144..164759155
-
Hg19::chr6:28583973..28583983,-p7@SCAND3
Hg19::chr6:30840600..30840605,-p@chr6:30840600..30840605
-
Hg19::chr6:68591133..68591142,-p@chr6:68591133..68591142
-
Hg19::chr6:68591611..68591627,-p@chr6:68591611..68591627
-
Hg19::chr6:68591651..68591660,-p@chr6:68591651..68591660
-
Hg19::chr6:68591719..68591728,-p@chr6:68591719..68591728
-
Hg19::chr6:68592711..68592723,-p@chr6:68592711..68592723
-
Hg19::chr6:68592948..68592958,-p@chr6:68592948..68592958
-
Hg19::chr6:68592986..68593000,-p@chr6:68592986..68593000
-
Hg19::chr6:68593158..68593168,-p@chr6:68593158..68593168
-
Hg19::chr6:68593206..68593218,-p@chr6:68593206..68593218
-
Hg19::chr6:68593227..68593234,-p@chr6:68593227..68593234
-
Hg19::chr6:68593250..68593259,-p@chr6:68593250..68593259
-
Hg19::chr6:68593264..68593275,-p@chr6:68593264..68593275
-
Hg19::chr6:68593520..68593534,-p@chr6:68593520..68593534
-
Hg19::chr6:68593536..68593560,-p@chr6:68593536..68593560
-
Hg19::chr6:68593587..68593600,-p@chr6:68593587..68593600
-
Hg19::chr6:68593630..68593641,-p@chr6:68593630..68593641
-
Hg19::chr6:68593653..68593661,-p@chr6:68593653..68593661
-
Hg19::chr6:68593762..68593772,-p@chr6:68593762..68593772
-
Hg19::chr6:68593819..68593828,-p@chr6:68593819..68593828
-
Hg19::chr6:68594786..68594797,-p@chr6:68594786..68594797
-
Hg19::chr6:68594800..68594812,-p@chr6:68594800..68594812
-
Hg19::chr6:68595249..68595265,-p@chr6:68595249..68595265
-
Hg19::chr6:68595369..68595417,-p@chr6:68595369..68595417
-
Hg19::chr6:68595490..68595501,-p@chr6:68595490..68595501
-
Hg19::chr6:68595866..68595871,-p@chr6:68595866..68595871
-
Hg19::chr6:68596289..68596302,-p@chr6:68596289..68596302
-
Hg19::chr6:68596343..68596355,-p@chr6:68596343..68596355
-
Hg19::chr6:68596384..68596400,-p@chr6:68596384..68596400
-
Hg19::chr6:68596655..68596664,-p@chr6:68596655..68596664
-
Hg19::chr6:68596698..68596715,-p@chr6:68596698..68596715
-
Hg19::chr6:68596757..68596769,-p@chr6:68596757..68596769
-
Hg19::chr6:68596783..68596797,-p@chr6:68596783..68596797
-
Hg19::chr6:68596826..68596859,-p@chr6:68596826..68596859
-
Hg19::chr6:68597240..68597258,-p@chr6:68597240..68597258
-
Hg19::chr6:68597438..68597450,-p@chr6:68597438..68597450
-
Hg19::chr6:68597572..68597583,-p@chr6:68597572..68597583
-
Hg19::chr6:68597599..68597612,-p@chr6:68597599..68597612
-
Hg19::chr6:68597965..68597975,-p@chr6:68597965..68597975
-
Hg19::chr6:68597994..68598005,-p@chr6:68597994..68598005
-
Hg19::chr6:68598190..68598207,-p@chr6:68598190..68598207
-
Hg19::chr6:68598245..68598268,-p@chr6:68598245..68598268
-
Hg19::chr6:68598272..68598298,-p@chr6:68598272..68598298
-
Hg19::chr6:68598314..68598325,-p@chr6:68598314..68598325
-
Hg19::chr6:68598366..68598367,-p@chr6:68598366..68598367
-
Hg19::chr6:68598473..68598480,-p@chr6:68598473..68598480
-
Hg19::chr6:68598507..68598519,-p@chr6:68598507..68598519
-
Hg19::chr6:68598534..68598555,-p@chr6:68598534..68598555
-
Hg19::chr6:68598587..68598598,-p@chr6:68598587..68598598
-
Hg19::chr6:68598642..68598649,-p@chr6:68598642..68598649
-
Hg19::chr6:68598674..68598685,-p@chr6:68598674..68598685
-
Hg19::chr6:68598984..68598997,-p2@uc003pes.1
p2@uc003pet.1
Hg19::chr6:68599042..68599067,-p1@uc003pes.1
p1@uc003pet.1
Hg19::chr6:71104588..71104593,+p1@ENST00000418403
Hg19::chr7:106650705..106650710,+p@chr7:106650705..106650710
+
Hg19::chr7:10819582..10819601,-p1@MGC4859
Hg19::chr7:110969544..110969578,-p@chr7:110969544..110969578
-
Hg19::chr7:120716625..120716660,+p3@C7orf58
Hg19::chr7:12443477..12443496,-p2@VWDE
Hg19::chr7:12443501..12443549,-p1@VWDE
Hg19::chr7:145482072..145482103,+p@chr7:145482072..145482103
+
Hg19::chr7:150652884..150652911,-p2@KCNH2
Hg19::chr7:150652924..150652927,-p5@KCNH2
Hg19::chr7:16301644..16301664,+p@chr7:16301644..16301664
+
Hg19::chr7:1894852..1894864,-p@chr7:1894852..1894864
-
Hg19::chr7:84509904..84509926,-p@chr7:84509904..84509926
-
Hg19::chr8:130587179..130587190,-p2@ENST00000520048
Hg19::chr8:130587239..130587250,-p1@ENST00000520048
Hg19::chr8:130587254..130587271,-p1@ENST00000523151
Hg19::chr8:130703341..130703361,-p@chr8:130703341..130703361
-
Hg19::chr8:93889862..93889867,-p1@ENST00000504861
p1@uc003yfj.1
Hg19::chr9:101836652..101836660,+p@chr9:101836652..101836660
+
Hg19::chr9:132620630..132620639,+p@chr9:132620630..132620639
+
Hg19::chr9:132620647..132620657,+p@chr9:132620647..132620657
+
Hg19::chr9:132620675..132620685,+p@chr9:132620675..132620685
+
Hg19::chrX:120325900..120325903,+p@chrX:120325900..120325903
+
Hg19::chrX:48216123..48216142,-p1@SSX3
Hg19::chrX:49006889..49006893,-p@chrX:49006889..49006893
-
Hg19::chrX:53285072..53285085,-p@chrX:53285072..53285085
-
Hg19::chrX:65146038..65146063,-p@chrX:65146038..65146063
-
Hg19::chrX:65219587..65219598,+p2@ENST00000424241
Hg19::chrX:65219618..65219630,+p1@ENST00000424241
Hg19::chrX:65219642..65219651,+p3@ENST00000424241
Hg19::chrX:65382468..65382486,+p7@HEPH
Hg19::chrX:65382506..65382520,+p5@HEPH


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005344oxygen transporter activity0.0283369321172339
GO:0005833hemoglobin complex0.0283369321172339
GO:0015671oxygen transport0.0283369321172339
GO:0015669gas transport0.0283369321172339
GO:0007259JAK-STAT cascade0.0337650888844149
GO:0019221cytokine and chemokine mediated signaling pathway0.034230002126629



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

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