DOID:0050615: Difference between revisions
From FANTOM5_SSTAR
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|def="An organ system cancer located_in the respiratory system that is characterized by uncontrolled ce...") |
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|def="An organ system cancer located_in the respiratory system that is characterized by uncontrolled cellular proliferation in the respiratory tract." [url:http\://en.wikipedia.org/wiki/Respiratory_tract_neoplasm] | |def="An organ system cancer located_in the respiratory system that is characterized by uncontrolled cellular proliferation in the respiratory tract." [url:http\://en.wikipedia.org/wiki/Respiratory_tract_neoplasm] | ||
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Revision as of 13:52, 11 June 2012
Name: | respiratory system cancer |
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Namespace: | disease_ontology |
Definition: | "An organ system cancer located_in the respiratory system that is characterized by uncontrolled cellular proliferation in the respiratory tract." [url:http\://en.wikipedia.org/wiki/Respiratory_tract_neoplasm] |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | DOID:0050686(organ system cancer) |
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Children
is a: | DOID:0050619 (paranasal sinus cancer),DOID:1324 (lung cancer) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10414-106B9 (maxillary sinus tumor cell line:HSQ-89)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10499-107C4 (lung adenocarcinoma cell line:A549)
- 10500-107C5
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
... further results Mouse (Mus musculus)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10414-106B9 (maxillary sinus tumor cell line:HSQ-89)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10499-107C4 (lung adenocarcinoma cell line:A549)
- 10500-107C5
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0050615 (respiratory system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data