DOID:4045: Difference between revisions
From FANTOM5_SSTAR
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|id=DOID:4045
|name=muscle cancer
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|def="A musculoskeletal system cancer that is located_in muscle." [url:http\://en.wikipedia.org/wiki/Muscle]
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|id=DOID:4045 | |id=DOID:4045 | ||
|name=muscle cancer | |name=muscle cancer | ||
|namespace= | |namespace=disease_ontology | ||
|def="A musculoskeletal system cancer that is located_in muscle." [url:http\://en.wikipedia.org/wiki/Muscle] | |def="A musculoskeletal system cancer that is located_in muscle." [url:http\://en.wikipedia.org/wiki/Muscle] | ||
|xref= | |xref=MSH:D009217;;SNOMEDCT_2010_1_31:20667008;;SNOMEDCT_2010_1_31:363495004;;SNOMEDCT_2010_1_31:93913006;;UMLS_CUI:C0027095;;UMLS_CUI:C0684743 | ||
|is_a=DOID:0060100 | |is_a=DOID:0060100 | ||
|synonym="malignant neoplasm of muscle, NOS" EXACT [SNOMEDCT_2005_07_31:93913006];;"malignant tumor of muscle (disorder)" EXACT [SNOMEDCT_2005_07_31:363495004];;"malignant tumor of the Muscle" EXACT [NCI2004_11_17:C4883];;"myosarcoma" EXACT [];;"Myosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:20667008] | |synonym="malignant neoplasm of muscle, NOS" EXACT [SNOMEDCT_2005_07_31:93913006];;"malignant tumor of muscle (disorder)" EXACT [SNOMEDCT_2005_07_31:363495004];;"malignant tumor of the Muscle" EXACT [NCI2004_11_17:C4883];;"myosarcoma" EXACT [];;"Myosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:20667008] | ||
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|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |||
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Revision as of 14:00, 11 June 2012
| Name: | muscle cancer | |
|---|---|---|
| Namespace: | disease_ontology | |
| Definition: | "A musculoskeletal system cancer that is located_in muscle." [url:http\://en.wikipedia.org/wiki/Muscle] | |
| Xrefs: |
| |
| Synonyms: |
"malignant neoplasm of muscle, NOS" EXACT [SNOMEDCT_2005_07_31:93913006] "malignant tumor of muscle (disorder)" EXACT [SNOMEDCT_2005_07_31:363495004] "malignant tumor of the Muscle" EXACT [NCI2004_11_17:C4883] "myosarcoma" EXACT [] "Myosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:20667008] | |
| Alt_id: | DOID:4046 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0060100(musculoskeletal system cancer) |
|---|
Children
| is a: | DOID:4043 (skeletal muscle cancer),DOID:4230 (smooth muscle cancer) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10722-110A2 (leiomyosarcoma cell line:Hs 5.T)
- 10734-110B5
- 10736-110B7
- 12159-128G8 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL))
- 12161-128H1 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL))
- 12163-128H3 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL))
Mouse (Mus musculus)
- 10722-110A2 (leiomyosarcoma cell line:Hs 5.T)
- 10734-110B5
- 10736-110B7
- 12159-128G8 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL))
- 12161-128H1 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL))
- 12163-128H3 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL))
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4045 (muscle cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
