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UBERON:0001637: Difference between revisions

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|part_of=UBERON:0004572
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
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Revision as of 17:12, 15 June 2012

Name:artery
Definition:"An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB]
Xrefs:
links:

AAO:0010211
AEO:0000208
BTO:0000573
EFO:0000814
EHDAA2:0000143
EHDAA2:0003253
EV:0100026
FMA:50720
GAID:468
galen:Artery
MA:0000064
MAT:0000034
MESH:A.07.231.114
MIAA:0000034
ncithesaurus:Artery
OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA
SCTID:362877004
TAO:0000005
VHOG:0001251
XAO:0000114

ZFA:0000005
Synonyms: "arterial subtree" EXACT []
"arterial system" RELATED []
"arterial tree organ part" EXACT []
"arterial vessel" RELATED []
Comments:Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube. In fact, we use this class in a fairly generic fashion, to encompass both individual tubes and tube trees. In the future we may introduce more specific subclasses
Alt_id: UBERON:FMA_50720-MA_0000061-MA_0000064-MIAA_0000034-XAO_0000114-ZFA_0000005
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001981(blood vessel),UBERON:0003509(arterial blood vessel)
part_of:UBERON:0004572(arterial system)



Children

is a:UBERON:0001310 (umbilical artery),UBERON:0002012 (pulmonary artery),UBERON:0002061 (truncus arteriosus),UBERON:0002457 (intersomitic artery),UBERON:0003469 (respiratory system artery),UBERON:0004573 (systemic artery),UBERON:0005432 (aortic sac)
derives from:FF:0010190 (human artery - adult sample)
part of:UBERON:0000415 (artery wall),UBERON:0001917 (endothelium of artery),UBERON:0002111 (artery smooth muscle tissue),UBERON:0007240 (tunica adventitia of artery),CL:1000413 (endothelial cell of artery)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001637 (artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data