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UBERON:0001982: Difference between revisions

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Revision as of 17:14, 15 June 2012

Name:capillary
Definition:"Microvessel of the blood circulation system lined with vascular endothelial cells[ZFA]. Any of the smallest blood vessels connecting arterioles with venules." [NLM:capillary, Wikipedia:Capillary]
Xrefs:
links:

AAO:0010252
BTO:0002045
EFO:0001906
EMAPA:28039
EMAPA:28075
EV:0100035
FMA:63194
MA:0000065
MESH:A.07.231.432.410
ncithesaurus:Capillary
NIF_GrossAnatomy:nlx_anat_090902
OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA
VHOG:0001253
XAO:0000116

ZFA:0005250
Synonyms: "blood capillary" EXACT []
"capillary vessel" EXACT []
Alt_id: UBERON:FMA_63194-MA_0000065-XAO_0000116
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001981(blood vessel)



Children

is a:UBERON:2005260 (fenestrated capillary)
part of:UBERON:0001915 (endothelium of capillary)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11265-116G5 (Endothelial Cells - Microvascular, donor1)
  • 11342-117G1 (Endothelial Cells - Microvascular, donor2)
  • 11414-118F1 (Endothelial Cells - Microvascular, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001982 (capillary), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data