UBERON:0003258: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0003258
|name=endoderm of foregut
|namespace=
|def="An endoderm that is part of a foregut [Obol]." [OBOL:automatic]
|xref=EHDAA:524;;EHDAA2:0000566
|...") |
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|part_of=UBERON:0001041 | |part_of=UBERON:0001041 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:18, 15 June 2012
| Name: | endoderm of foregut | ||
|---|---|---|---|
| Definition: | "An endoderm that is part of a foregut [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: | "foregut endoderm" EXACT [OBOL:automatic] | ||
| Comments: | TODO - check |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0000925(endoderm) |
|---|---|
| part_of: | UBERON:0001041(foregut) |
Children
| is a: | UBERON:0004117 (pharyngeal pouch),UBERON:0007690 (early pharyngeal endoderm) |
|---|---|
| part of: | UBERON:0008947 (respiratory primordium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003258 (endoderm of foregut), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.21e-66 | FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_951a1ec5d60f9a585b9bb5557d81bf97 | p4@Tbx4 |
| 1.21e-66 | FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_951a1ec5d60f9a585b9bb5557d81bf97 | p4@Tbx4 |
| 4.71e-66 | FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_e68e02132d734081ae71742a5a26395a | p@chr9:20829911..20829920, + |
| 4.71e-66 | FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_e68e02132d734081ae71742a5a26395a | p@chr9:20829911..20829920, + |
| 1.06e-62 | FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_a27d5c37d44a01a76dafac683f35cb0c | p1@ENSMUST00000134305 |
| 1.06e-62 | FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_a27d5c37d44a01a76dafac683f35cb0c | p1@ENSMUST00000134305 |
| 1.52e-61 | FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_be65beddee7f988e0514772d1f9b2cab | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 1.52e-61 | FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_be65beddee7f988e0514772d1f9b2cab | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 1.91e-61 | FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_f7d5f7246390d740f93ef89097904eb2 | p6@Tbx4 |
| 1.91e-61 | FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_f7d5f7246390d740f93ef89097904eb2 | p6@Tbx4 |
| 5.56e-61 | FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_cacabe38f2faf8e6f503598ac83985ca | p@chr8:94878479..94878503, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_cacabe38f2faf8e6f503598ac83985ca | p@chr12:57598716..57598720, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_cacabe38f2faf8e6f503598ac83985ca | p@chr11:59457994..59457997, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_cacabe38f2faf8e6f503598ac83985ca | p@chr12:57598716..57598720, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_cacabe38f2faf8e6f503598ac83985ca | p@chr8:94878479..94878503, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_cacabe38f2faf8e6f503598ac83985ca | p@chr4:138812977..138812992, + |
| 5.56e-61 | FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_cacabe38f2faf8e6f503598ac83985ca | p@chr4:138812977..138812992, + |
| 5.56e-61 | FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_cacabe38f2faf8e6f503598ac83985ca | p@chr11:59457994..59457997, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_cacabe38f2faf8e6f503598ac83985ca | p@chr12:57636003..57636017, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_cacabe38f2faf8e6f503598ac83985ca | p@chr12:57636003..57636017, - |
| 1.35e-60 | FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_7f08c2635b5fe9941abaaae64eb31209 | p9@Nav2 |
| 1.35e-60 | FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_7f08c2635b5fe9941abaaae64eb31209 | p9@Nav2 |
| 2.87e-58 | FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_c2de279ce30ef2b071506486aed774d6 | p@chr12:57633887..57633899, - |
| 2.87e-58 | FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_c2de279ce30ef2b071506486aed774d6 | p@chr12:57633887..57633899, - |
| 1.23e-57 | FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_4cc1a9bc9aae600221beb27dac4449ad | p8@Nkx2-1 |
| 1.23e-57 | FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_4cc1a9bc9aae600221beb27dac4449ad | p8@Nkx2-1 |
| 1.37e-57 | FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_e7707349e061f0b165490d40adf75edf | p2@E030019B13Rik |
| 1.37e-57 | FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_e7707349e061f0b165490d40adf75edf | p2@E030019B13Rik |
| 1.53e-57 | FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_8afc95442496d483fc1e5bbd60123541 | p10@Nebl |
| 1.53e-57 | FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_8afc95442496d483fc1e5bbd60123541 | p10@Nebl |
| 1.7e-57 | FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_8fbde072fd66c5d39ad533a0353e3afd | p9@Nkx2-1 |
| 1.7e-57 | FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_8fbde072fd66c5d39ad533a0353e3afd | p9@Nkx2-1 |
| 1.79e-56 | FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_e50b6609bfa39d8efd57ebb8bade61f3 | p3@Trpm6 |
| 1.79e-56 | FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_e50b6609bfa39d8efd57ebb8bade61f3 | p@chr12:57598537..57598547, - |
| 1.79e-56 | FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_e50b6609bfa39d8efd57ebb8bade61f3 | p3@Trpm6 |
| 1.79e-56 | FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_e50b6609bfa39d8efd57ebb8bade61f3 | p3@E030019B13Rik |
| 1.79e-56 | FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_e50b6609bfa39d8efd57ebb8bade61f3 | p3@E030019B13Rik |
| 1.79e-56 | FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_e50b6609bfa39d8efd57ebb8bade61f3 | p@chr12:57598537..57598547, - |
| 2.01e-56 | FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_b059de7f354677ffca07a8718b808ec0 | p@chr12:57636278..57636289, + |
| 2.01e-56 | FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_b059de7f354677ffca07a8718b808ec0 | p@chr14:115241755..115241762, - |
| 2.01e-56 | FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_b059de7f354677ffca07a8718b808ec0 | p@chr14:115241755..115241762, - |
| 2.01e-56 | FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_b059de7f354677ffca07a8718b808ec0 | p@chr12:57636278..57636289, + |
| 2.24e-56 | FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_2565e48f1f8091d459b7722b61726cf5 | p@chr4:138812999..138813015, + |
| 2.24e-56 | FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_2565e48f1f8091d459b7722b61726cf5 | p@chr4:138812999..138813015, + |
| 3.93e-56 | FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_11be555a46ff1b41e465a22bba766629 | p7@Il18r1 |
| 3.93e-56 | FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_11be555a46ff1b41e465a22bba766629 | p7@Il18r1 |
| 6.2e-56 | FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_880b4d1ad3de83b353a2b3e043037d1f | p@chr14:70922576..70922589, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_880b4d1ad3de83b353a2b3e043037d1f | p@chr2:66524237..66524246, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_880b4d1ad3de83b353a2b3e043037d1f | p4@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_880b4d1ad3de83b353a2b3e043037d1f | p@chr14:70921265..70921285, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_880b4d1ad3de83b353a2b3e043037d1f | p@chr14:70921265..70921285, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_880b4d1ad3de83b353a2b3e043037d1f | p@chr1:184610062..184610074, + |
| 6.2e-56 | FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_880b4d1ad3de83b353a2b3e043037d1f | p@chr2:66524237..66524246, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_880b4d1ad3de83b353a2b3e043037d1f | p@chr2:164374820..164374835, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_880b4d1ad3de83b353a2b3e043037d1f | p@chr1:184610062..184610074, + |
| 6.2e-56 | FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_880b4d1ad3de83b353a2b3e043037d1f | p3@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_880b4d1ad3de83b353a2b3e043037d1f | p@chr2:164374820..164374835, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_880b4d1ad3de83b353a2b3e043037d1f | p3@Sftpb |
| 6.2e-56 | FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_880b4d1ad3de83b353a2b3e043037d1f | p4@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_880b4d1ad3de83b353a2b3e043037d1f | p@chr14:70922576..70922589, - |
| 9.42e-56 | FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_c13a3f3c9e324ab1183065989a184a77 | p@chr5:120282691..120282701, + |
| 9.42e-56 | FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_c13a3f3c9e324ab1183065989a184a77 | p@chr5:120282691..120282701, + |
| 1.34e-54 | FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_d6b8d784ee19621de03bd313ca498ce2 | p@chr12:57636911..57636924, - |
| 1.34e-54 | FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_d6b8d784ee19621de03bd313ca498ce2 | p@chr12:57636911..57636924, - |
| 3.97e-54 | FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_b0d33f312feddd5288ef2399ef6dd030 | p4@E030019B13Rik |
| 3.97e-54 | FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_b0d33f312feddd5288ef2399ef6dd030 | p4@E030019B13Rik |
| 1.46e-52 | FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_5335d5c5b6235620d2940868e4df70ed | p@chr12:57623172..57623185, - |
| 1.46e-52 | FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_5335d5c5b6235620d2940868e4df70ed | p@chr12:57623172..57623185, - |
| 1.46e-52 | FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_5335d5c5b6235620d2940868e4df70ed | p@chr14:70922007..70922052, + |
| 1.46e-52 | FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_5335d5c5b6235620d2940868e4df70ed | p@chr14:70922007..70922052, + |
| 1.62e-52 | FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_c70dff63f6b914e65754b39fd0815b44 | p@chr5:28785436..28785450, - |
| 1.62e-52 | FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_c70dff63f6b914e65754b39fd0815b44 | p@chr5:28785436..28785450, - |
| 1.8e-52 | FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_b3312ade6c09e43d3733c8fd50857b86 | p@chr14:70922459..70922482, - |
| 1.8e-52 | FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_b3312ade6c09e43d3733c8fd50857b86 | p@chr14:70922459..70922482, - |
| 5.65e-52 | FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_0b47e59ca7c0555c7d998a43281b8956 | p4@Etv5 |
| 5.65e-52 | FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_0b47e59ca7c0555c7d998a43281b8956 | p4@Etv5 |
| 1.97e-51 | FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_dd3578b29adec1e2263e37e4b8c22f50 | p4@Lamp3 |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr6:72263977..72263993, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr6:72264418..72264441, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr14:70923240..70923251, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr14:70923240..70923251, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr6:72263977..72263993, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr14:70922486..70922510, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr14:70922486..70922510, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr12:57376690..57376716, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr6:72264890..72264911, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_dd3578b29adec1e2263e37e4b8c22f50 | p4@Lamp3 |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr6:72259797..72259814, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr6:72259797..72259814, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr12:57376690..57376716, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr6:72264890..72264911, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_dd3578b29adec1e2263e37e4b8c22f50 | p@chr6:72264418..72264441, + |
| 2.21e-51 | FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_2e1f7317689899bdbc6ea15589309031 | p@chr6:72264609..72264653, - |
| 2.21e-51 | FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_2e1f7317689899bdbc6ea15589309031 | p@chr6:72264609..72264653, - |
| 2.47e-51 | FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_48ee725e0e8067c089139c02ce39a8fb | p@chr6:129378567..129378573, - |
| 2.47e-51 | FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_48ee725e0e8067c089139c02ce39a8fb | p@chr6:129378567..129378573, - |
| 3.74e-51 | FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_c5d77647e6c4f396001370a06a0d059c | p16@Pde5a |
| 3.74e-51 | FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_c5d77647e6c4f396001370a06a0d059c | p16@Pde5a |
| 5.44e-51 | FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_afd23d8464671da5a885843e01d43ce6 | p7@Nkx2-1 |
| 5.44e-51 | FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_afd23d8464671da5a885843e01d43ce6 | p7@Nkx2-1 |
