UBERON:0006331: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0006331
|name=brainstem nucleus
|namespace=
|def=
|xref=MA:0000821
|is_a=UBERON:0002308
|synonym=
|comment=
|alt_id=
|disjoint_from=
|union_of=
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|part_of=UBERON:0002298 | |part_of=UBERON:0002298 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:24, 15 June 2012
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002308(nucleus of brain) |
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part_of: | UBERON:0002298(brainstem) |
Children
is a: | UBERON:0002148 (locus ceruleus) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10165-103B3 (locus coeruleus, adult, donor10252)
- 10182-103D2 (locus coeruleus - adult, donor10196)
- 10362-105F2 (locus coeruleus, newborn, donor10223)
- 10375-105G6 (locus coeruleus, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006331 (brainstem nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data