Personal tools

CL:0000048: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:0000048 |name=multi fate stem cell |namespace=cell |def="A stem cell that can give rise to multiple lineages of cells." [GOC:add] |xref=FMA:84789 |is_a=CL:00...")
 
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000048
|id=CL:0000048
|name=multi fate stem cell
|name=multipotent stem cell
|namespace=cell
|namespace=efo
|def="A stem cell that can give rise to multiple lineages of cells." [GOC:add]
|def="A stem cell that can give rise to multiple lineages of cells." [GOC:add]
|xref=FMA:84789
|xref=FMA:84789
|is_a=CL:0000723
|is_a=CL:0000034;;CL:0000723
|synonym="multi-fate stem cell" EXACT [];;"multifate stem cell" EXACT [];;"Multipotent cell" EXACT [];;"multipotent stem cell" EXACT []
|synonym="multi-fate stem cell" EXACT [];;"multifate stem cell" EXACT [];;"multipotent cell" EXACT [];;"multipotent stem cell" EXACT []
|comment=
|comment=
|alt_id=
|alt_id=
Line 20: Line 20:
|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:35, 15 June 2012

Name:multipotent stem cell
Namespace:efo
Definition:"A stem cell that can give rise to multiple lineages of cells." [GOC:add]
Xrefs:
links:
FMA:84789
Synonyms: "multi-fate stem cell" EXACT []
"multifate stem cell" EXACT []
"multipotent cell" EXACT []
"multipotent stem cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000034(stem cell),CL:0000723(somatic stem cell)



Children


is a:CL:0000037 (hematopoietic stem cell),CL:0000047 (neuronal stem cell),CL:0000134 (mesenchymal cell),CL:0000355 (multi-potent skeletal muscle stem cell),CL:0002195 (hepatic stem cell),CL:0002250 (intestinal crypt stem cell),CL:0002351 (progenitor cell of endocrine pancreas),CL:0005020 (lymphangioblast),CL:0005026 (hepatoblast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000048 (multipotent stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.25e-53FFCP PHASE1:Hg19::chr19:48828606..48828637,+#_19330db98cde0a0defb85bd3f56e7e18p2@EMP3
7.25e-53FFCP PHASE2:Hg19::chr19:48828606..48828637,+#_19330db98cde0a0defb85bd3f56e7e18p2@EMP3
5.38e-51FFCP PHASE2:Hg19::chr1:145096480..145096513,+#_f916fefd4c4099baf9230b511078b27dp2@SEC22B
5.38e-51FFCP PHASE1:Hg19::chr1:145096480..145096513,+#_f916fefd4c4099baf9230b511078b27dp2@SEC22B
1.25e-50FFCP PHASE1:Hg19::chr2:182322231..182322262,+#_44c0faca87adbf4f7adcb3cac2149744p2@ITGA4
1.25e-50FFCP PHASE2:Hg19::chr2:182322231..182322262,+#_44c0faca87adbf4f7adcb3cac2149744p2@ITGA4
2.25e-50FFCP PHASE2:Hg19::chr2:74781828..74781898,+#_6277800f4c98efd1c70c145f985a7d9bp1@DOK1
2.25e-50FFCP PHASE1:Hg19::chr2:74781828..74781898,+#_6277800f4c98efd1c70c145f985a7d9bp1@DOK1
2.15e-45FFCP PHASE1:Hg19::chr5:78281092..78281154,-#_c6841bf760d97c2b6e47fa2756f91df0p1@ARSB
2.15e-45FFCP PHASE2:Hg19::chr5:78281092..78281154,-#_c6841bf760d97c2b6e47fa2756f91df0p1@ARSB
1.42e-44FFCP PHASE1:Mm9::chr1:146456236..146456244,-#_237ac63867766e70ba7bbb3d81fa74d0p1@ENSMUST00000157471
1.42e-44FFCP PHASE2:Mm9::chr1:146456236..146456244,-#_237ac63867766e70ba7bbb3d81fa74d0p1@ENSMUST00000157471
3.18e-44FFCP PHASE1:Hg19::chr6:31704075..31704106,-#_249caa3869c58aae696fc219ae3d187ep2@CLIC1
3.18e-44FFCP PHASE2:Hg19::chr6:31704075..31704106,-#_249caa3869c58aae696fc219ae3d187ep2@CLIC1
4.64e-44FFCP PHASE1:Hg19::chr2:114647617..114647739,+#_c469fb44cda564232486d6ca5d1e0819p1@ACTR3
4.64e-44FFCP PHASE2:Hg19::chr2:114647617..114647739,+#_c469fb44cda564232486d6ca5d1e0819p1@ACTR3
1.2e-43FFCP PHASE1:Mm9::chr3:32910877..32910881,+#_2375432704a7b18a319f8bb967ee4babp1@ENSMUST00000122716
1.2e-43FFCP PHASE2:Mm9::chr3:32910877..32910881,+#_2375432704a7b18a319f8bb967ee4babp1@ENSMUST00000122716
3.49e-43FFCP PHASE1:Hg19::chr19:48828647..48828658,+#_9cc7becc02f0ebc286450c3fd6d9ea10p3@EMP3
3.49e-43FFCP PHASE2:Hg19::chr19:48828647..48828658,+#_9cc7becc02f0ebc286450c3fd6d9ea10p3@EMP3
2.32e-42FFCP PHASE2:Mm9::chr19:18807230..18807233,+#_ef0df60e0a055c0b07103276f24dc3dap1@ENSMUST00000083007
2.32e-42FFCP PHASE1:Mm9::chr19:18807230..18807233,+#_ef0df60e0a055c0b07103276f24dc3dap1@ENSMUST00000083007
2.87e-42FFCP PHASE2:Hg19::chr11:504446..504486,-#_20cdd25fd08f7767d69f8c8ca4750928p4@RNH1
2.87e-42FFCP PHASE1:Hg19::chr11:504446..504486,-#_20cdd25fd08f7767d69f8c8ca4750928p4@RNH1
6.15e-42FFCP PHASE1:Hg19::chr16:50300440..50300485,+#_8aca61495579016a6600037f6a696b7ep1@ADCY7
6.15e-42FFCP PHASE2:Hg19::chr16:50300440..50300485,+#_8aca61495579016a6600037f6a696b7ep1@ADCY7
2.74e-41FFCP PHASE1:Hg19::chr1:183604794..183604908,-#_c29af3d2f64c4d0f736511fc9d9a66ecp1@ARPC5
2.74e-41FFCP PHASE2:Hg19::chr1:183604794..183604908,-#_c29af3d2f64c4d0f736511fc9d9a66ecp1@ARPC5
1.35e-40FFCP PHASE1:Hg19::chr12:75874580..75874611,+#_d25e95f3e751d8fd64c5b4b5ad23f9e1p2@GLIPR1
1.35e-40FFCP PHASE2:Hg19::chr12:75874580..75874611,+#_d25e95f3e751d8fd64c5b4b5ad23f9e1p2@GLIPR1
5.63e-40FFCP PHASE1:Mm9::chr4:32085713..32085717,-#_d5fa3e2238691028efaa95a85812732cp1@ENSMUST00000122491
5.63e-40FFCP PHASE2:Mm9::chr4:32085713..32085717,-#_d5fa3e2238691028efaa95a85812732cp1@ENSMUST00000122491
1.75e-39FFCP PHASE2:Hg19::chr15:90358115..90358195,-#_5d3e59ed50bb3648966c77cb1fdcd55bp3@ANPEP
1.75e-39FFCP PHASE1:Hg19::chr15:90358115..90358195,-#_5d3e59ed50bb3648966c77cb1fdcd55bp3@ANPEP
1.93e-39FFCP PHASE1:Hg19::chr15:73076030..73076121,-#_5c66b07a742ce0b56067d8fb6699fad5p1@ADPGK
1.93e-39FFCP PHASE2:Hg19::chr15:73076030..73076121,-#_5c66b07a742ce0b56067d8fb6699fad5p1@ADPGK
3.99e-39FFCP PHASE1:Mm9::chr3:19460250..19460260,+#_a16933335ff7229d2b740418c8364d2bp1@ENSMUST00000083241
3.99e-39FFCP PHASE2:Mm9::chr3:19460250..19460260,+#_a16933335ff7229d2b740418c8364d2bp1@ENSMUST00000083241
5.39e-39FFCP PHASE2:Hg19::chr2:182322070..182322155,+#_94dbea9ccfc8a4362d0157ae654ce136p1@ITGA4
5.39e-39FFCP PHASE1:Hg19::chr2:182322070..182322155,+#_94dbea9ccfc8a4362d0157ae654ce136p1@ITGA4
5.79e-39FFCP PHASE2:Mm9::chr11:48596086..48596090,+#_061be91a05e409b28b8b79e3c16f47b1p@chr11:48596086..48596090, +
5.79e-39FFCP PHASE1:Mm9::chr11:48596086..48596090,+#_061be91a05e409b28b8b79e3c16f47b1p@chr11:48596086..48596090, +
2.16e-38FFCP PHASE2:Mm9::chr16:72264646..72264650,-#_10bc43166f93f26ce6749fa9af7b3bb0p@chr16:72264646..72264650, -
2.16e-38FFCP PHASE1:Mm9::chr16:72264646..72264650,-#_10bc43166f93f26ce6749fa9af7b3bb0p@chr16:72264646..72264650, -
2.82e-38FFCP PHASE1:Hg19::chr18:18691563..18691610,-#_43cbe38f2b5db49603c3f6f13fdc76d8p4@ROCK1
2.82e-38FFCP PHASE2:Hg19::chr18:18691563..18691610,-#_43cbe38f2b5db49603c3f6f13fdc76d8p4@ROCK1
4.54e-38FFCP PHASE1:Mm9::chr4:131826124..131826129,-#_7c0fe2d8d34dcf3b6d4366ecb0299838p1@ENSMUST00000104135
4.54e-38FFCP PHASE2:Mm9::chr4:131826124..131826129,-#_7c0fe2d8d34dcf3b6d4366ecb0299838p1@ENSMUST00000104135
5.72e-38FFCP PHASE1:Mm9::chr19:26334980..26334985,-#_b0173c19df41d880125597954c16c9a7p1@ENSMUST00000122640
5.72e-38FFCP PHASE2:Mm9::chr19:26334980..26334985,-#_b0173c19df41d880125597954c16c9a7p1@ENSMUST00000122640
6.33e-38FFCP PHASE2:Hg19::chr1:20987936..20987969,-#_a7baa0d9731bc947709ef98ff221745cp2@DDOST
6.33e-38FFCP PHASE1:Hg19::chr1:20987936..20987969,-#_a7baa0d9731bc947709ef98ff221745cp2@DDOST
1.1e-37FFCP PHASE1:Hg19::chr15:90358048..90358103,-#_68c80fb861f30605ea9a4cfaad3dcca4p1@ANPEP
1.1e-37FFCP PHASE2:Hg19::chr15:90358048..90358103,-#_68c80fb861f30605ea9a4cfaad3dcca4p1@ANPEP
2.32e-37FFCP PHASE1:Hg19::chr10:17271909..17272033,-#_82ac48c452da6186667846834f07e525p1@uc001iot.1
2.32e-37FFCP PHASE2:Hg19::chr10:17271909..17272033,-#_82ac48c452da6186667846834f07e525p1@uc001iot.1
2.76e-37FFCP PHASE1:Hg19::chr1:46016703..46016755,+#_f64bed359331411ceb64a1d8e5a304a1p2@AKR1A1
2.76e-37FFCP PHASE2:Hg19::chr1:46016703..46016755,+#_f64bed359331411ceb64a1d8e5a304a1p2@AKR1A1
6.14e-37FFCP PHASE2:Hg19::chr20:61584026..61584096,+#_f97060d0d0732565f9c466d406893f69p1@SLC17A9
6.14e-37FFCP PHASE1:Hg19::chr20:61584026..61584096,+#_f97060d0d0732565f9c466d406893f69p1@SLC17A9
9.2e-37FFCP PHASE1:Hg19::chr12:110888103..110888172,-#_2eb10012e5fcef23dcc4e9c882214ff3p1@ARPC3
9.2e-37FFCP PHASE2:Hg19::chr12:110888103..110888172,-#_2eb10012e5fcef23dcc4e9c882214ff3p1@ARPC3
9.52e-37FFCP PHASE2:Hg19::chr11:504867..504925,-#_7cceff491046a83b3e28161652f6dc04p3@RNH1
9.52e-37FFCP PHASE1:Hg19::chr11:504867..504925,-#_7cceff491046a83b3e28161652f6dc04p3@RNH1
1.33e-36FFCP PHASE2:Mm9::chr3:72925786..72925790,+#_af84eb8376db156810bf4d8de007a062p@chr3:72925786..72925790, +
1.33e-36FFCP PHASE1:Mm9::chr3:72925786..72925790,+#_af84eb8376db156810bf4d8de007a062p@chr3:72925786..72925790, +
2.06e-36FFCP PHASE2:Hg19::chr2:102091566..102091581,-#_0f1280e9a0a818f62d04179be859e26cp1@RFX8
2.06e-36FFCP PHASE1:Hg19::chr2:102091566..102091581,-#_0f1280e9a0a818f62d04179be859e26cp1@RFX8
3.2e-36FFCP PHASE1:Hg19::chr12:75874525..75874549,+#_2463a1962eafe965da3b9e3e7bdc18d3p1@GLIPR1
3.2e-36FFCP PHASE2:Hg19::chr12:75874525..75874549,+#_2463a1962eafe965da3b9e3e7bdc18d3p1@GLIPR1
4.77e-36FFCP PHASE1:Mm9::chr14:106660467..106660471,-#_fd9cfd7e49f2bf855f171f4f90294c11p1@ENSMUST00000083259
4.77e-36FFCP PHASE2:Mm9::chr14:106660467..106660471,-#_fd9cfd7e49f2bf855f171f4f90294c11p1@ENSMUST00000083259
6.06e-36FFCP PHASE2:Hg19::chr12:75874561..75874574,+#_57561a22f8218e3d760e7f3e9393441fp3@GLIPR1
6.06e-36FFCP PHASE1:Hg19::chr12:75874561..75874574,+#_57561a22f8218e3d760e7f3e9393441fp3@GLIPR1
6.53e-36FFCP PHASE1:Hg19::chr21:26934434..26934452,+#_5607bb085e294b48510a326385d5f8b8p1@MIR155HG
6.53e-36FFCP PHASE2:Hg19::chr21:26934434..26934452,+#_5607bb085e294b48510a326385d5f8b8p1@MIR155HG
1.05e-35FFCP PHASE2:Hg19::chr2:192542577..192542595,-#_4e066c2e80c2fa283bee12ee639b4619p@chr2:192542577..192542595, -
1.05e-35FFCP PHASE1:Hg19::chr2:192542577..192542595,-#_4e066c2e80c2fa283bee12ee639b4619p@chr2:192542577..192542595, -
1.33e-35FFCP PHASE2:Mm9::chr10:104477319..104477348,+#_e654ed02bcce4f1b7df3b5f64b249201p1@ENSMUST00000082498
1.33e-35FFCP PHASE1:Mm9::chr10:104477319..104477348,+#_e654ed02bcce4f1b7df3b5f64b249201p1@ENSMUST00000082498
1.37e-35FFCP PHASE2:Hg19::chr9:35112376..35112395,-#_1d3b235d4e3a670da7621c8c4b862cebp@chr9:35112376..35112395, -
1.37e-35FFCP PHASE1:Hg19::chr9:35112376..35112395,-#_1d3b235d4e3a670da7621c8c4b862cebp@chr9:35112376..35112395, -
4.08e-35FFCP PHASE1:Hg19::chr11:504942..504959,-#_39af1eeaa8b7dfc07687c1627be2c822p5@RNH1
4.08e-35FFCP PHASE2:Hg19::chr11:504942..504959,-#_39af1eeaa8b7dfc07687c1627be2c822p5@RNH1
4.18e-35FFCP PHASE1:Mm9::chr5:115939562..115939592,-#_b958a773c9db7ff2a41b4361fdfb1124p@chr5:115939562..115939592, -
4.18e-35FFCP PHASE2:Mm9::chr5:115939562..115939592,-#_b958a773c9db7ff2a41b4361fdfb1124p@chr5:115939562..115939592, -
4.31e-35FFCP PHASE2:Hg19::chr1:20987982..20988007,-#_f5c8f1d0dbd55149d7d56c75a22b83d3p3@DDOST
4.31e-35FFCP PHASE1:Hg19::chr1:20987982..20988007,-#_f5c8f1d0dbd55149d7d56c75a22b83d3p3@DDOST
4.56e-35FFCP PHASE2:Hg19::chr14:73930324..73930350,-#_5c7db18e7153a980a05d788a10c71f08p2@NUMB
4.56e-35FFCP PHASE1:Hg19::chr14:73930324..73930350,-#_5c7db18e7153a980a05d788a10c71f08p2@NUMB
4.79e-35FFCP PHASE2:Mm9::chr5:115939465..115939467,+#_0d8f82c51e93d5460c14166f9e9bd85fp1@ENSMUST00000102044
4.79e-35FFCP PHASE1:Mm9::chr5:115939465..115939467,+#_0d8f82c51e93d5460c14166f9e9bd85fp1@ENSMUST00000102044
4.81e-35FFCP PHASE1:Hg19::chr3:50378235..50378286,-#_405f885f56c7c2cb401ac64d7d8f400ep2@RASSF1
4.81e-35FFCP PHASE2:Hg19::chr3:50378235..50378286,-#_405f885f56c7c2cb401ac64d7d8f400ep2@RASSF1
7.58e-35FFCP PHASE2:Hg19::chr5:114938090..114938226,-#_9a6c0251e9116b619041d4a49c937ce9p1@TICAM2, p2@TMED7-TICAM2
7.58e-35FFCP PHASE1:Hg19::chr5:114938090..114938226,-#_9a6c0251e9116b619041d4a49c937ce9p1@TICAM2, p2@TMED7-TICAM2
1.48e-34FFCP PHASE2:Mm9::chr11:68834407..68834410,+#_92933a9a8197897dde8cc2653a478544p@chr11:68834407..68834410, +
1.48e-34FFCP PHASE1:Mm9::chr11:68834407..68834410,+#_92933a9a8197897dde8cc2653a478544p@chr11:68834407..68834410, +
1.62e-34FFCP PHASE2:Hg19::chr19:2269520..2269526,+#_5485992d400e63ea04ab477beef47aefp1@OAZ1
1.62e-34FFCP PHASE1:Hg19::chr19:2269520..2269526,+#_5485992d400e63ea04ab477beef47aefp1@OAZ1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000048&oldid=1833486"