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(Created page with "{{CL |id=CL:0000187 |name=muscle cell |namespace=cell |def="A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organ...")
 
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|id=CL:0000187
|id=CL:0000187
|name=muscle cell
|name=muscle cell
|namespace=cell
|namespace=efo
|def="A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns." [MESH:A.11.620]
|def="A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns." [MESH:A.11.620]
|xref=BTO:0000888;;BTO:0000902;;FBbt:00005074;;FMA:67328
|xref=BTO:0000888;;BTO:0000902;;FBbt:00005074;;FMA:67328;;WBbt:0003675
|is_a=CL:0000183;;CL:0000393;;CL:0000548;;CL:0002371
|is_a=CL:0000183;;CL:0000393;;CL:0000548;;CL:0002371;;EFO:0002956
|synonym="myocyte" EXACT []
|synonym="myocyte" EXACT []
|comment=
|comment=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:36, 15 June 2012

Name:muscle cell
Namespace:efo
Definition:"A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns." [MESH:A.11.620]
Xrefs:
links:

BTO:0000888
BTO:0000902
FBbt:00005074
FMA:67328

WBbt:0003675
Synonyms: "myocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000183(contractile cell),CL:0000393(electrically responsive cell),CL:0000548(animal cell),CL:0002371(somatic cell),EFO:0002956()
develops_from:CL:0000056(myoblast)



Children


is a:CL:0000737 (striated muscle cell),CL:0008000 (non-striated muscle cell),CL:0008007 (visceral muscle cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000187 (muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data