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Revision as of 17:40, 15 June 2012

Name:epithelial cell of alimentary canal
Namespace:cell
Definition:"An epithelial cell of the musculomembranous digestive tube extending from the mouth to the anus." [GOC:tfm, ISBN:0721662544]
Created by:tmeehan
Creation date:2010-09-08T09:26:53Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0002076(endo-epithelial cell)
part_of:UBERON:0001555(digestive tract)



Children


is a:CL:0000682 (M cell of gut),CL:0002166 (epithelial cell of Malassez),CL:0002170 (keratinized cell of the oral mucosa),CL:0002178 (epithelial cell of stomach),CL:0002252 (epithelial cell of esophagus),CL:0002563 (intestinal epithelial cell),CL:0002621 (gingival epithelial cell),CL:1001596 (salivary gland glandular cell)
derives from:FF:0100790 (pharyngeal cancer cell line sample),FF:0102211 (oral squamous cell carcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002251 (epithelial cell of alimentary canal), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data