UBERON:0002097: Difference between revisions
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|xref=BTO:0001253;;EFO:0000962;;EHDAA2:0001844;;EMAPA:17525;;FMA:7163;;galen:Skin;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png;;MESH:A.17.815;;ncithesaurus:Skin;;OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA;;SCTID:181469002;;XAO:0000023 | |xref=BTO:0001253;;EFO:0000962;;EHDAA2:0001844;;EMAPA:17525;;FMA:7163;;galen:Skin;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png;;MESH:A.17.815;;ncithesaurus:Skin;;OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA;;SCTID:181469002;;XAO:0000023 | ||
|is_a=UBERON:0000062 | |is_a=UBERON:0000062 | ||
|synonym="entire skin" EXACT [];;"integument" RELATED [];;"skin" RELATED [] | |synonym="entire skin" EXACT [];;"integument" RELATED [];;"pelt" RELATED [];;"skin" RELATED [] | ||
|comment=Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin | |comment=Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin | ||
|alt_id=UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023 | |alt_id=UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023 | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=major_organ;;uberon_slim | |subset=major_organ;;uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:01, 26 June 2012
| Name: | skin of body | ||
|---|---|---|---|
| Definition: | "Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin[FMA]. Surface structure that consists of the external membranous integument of the animal." [FMA:7163, OMD:skin, Wikipedia:Skin] | ||
| Xrefs: |
| ||
| Synonyms: |
"entire skin" EXACT [] "integument" RELATED [] "pelt" RELATED [] "skin" RELATED [] | ||
| Comments: | Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin | ||
| Alt_id: | UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023 | ||
| Subset: |
major_organ uberon_slim |
200px-Skin.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000062(organ) |
|---|
Children
| is a: | FF:0011174 (Skin - armpit hair follicle),FF:0011178 (Skin - torso) |
|---|---|
| part of: | UBERON:0000014 (zone of skin),UBERON:0001003 (skin epidermis),UBERON:0001705 (nail),UBERON:0002067 (dermis),UBERON:0002284 (hyponychium),UBERON:0002419 (skin gland),CL:0002620 (skin fibroblast),UBERON:0003487 (skin sebaceous gland) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10273-104E3
- 10283-104F4
- 10284-104F5
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10288-104F9 (tongue epidermis (fungiform papillae), donor1)
- 10289-104G1
... further results Mouse (Mus musculus)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10273-104E3
- 10283-104F4
- 10284-104F5
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10288-104F9 (tongue epidermis (fungiform papillae), donor1)
- 10289-104G1
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002097 (skin of body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.4e-86 | FFCP PHASE2:Mm9::chr13:113381448..113381495,-#_4a7c20bd216a57c0900b7931809bd5ef | p@chr13:113381448..113381495, - |
| 1.4e-86 | FFCP PHASE1:Mm9::chr4:113836042..113836053,+#_4a7c20bd216a57c0900b7931809bd5ef | p2@Skint11 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr1:191609138..191609151,+#_4a7c20bd216a57c0900b7931809bd5ef | p@chr1:191609138..191609151, + |
| 1.4e-86 | FFCP PHASE2:Mm9::chr11:36246521..36246530,-#_4a7c20bd216a57c0900b7931809bd5ef | p@chr11:36246521..36246530, - |
| 1.4e-86 | FFCP PHASE1:Mm9::chr13:113381448..113381495,-#_4a7c20bd216a57c0900b7931809bd5ef | p@chr13:113381448..113381495, - |
| 1.4e-86 | FFCP PHASE1:Mm9::chr4:138313406..138313411,-#_4a7c20bd216a57c0900b7931809bd5ef | p2@Pla2g2f |
| 1.4e-86 | FFCP PHASE1:Mm9::chr5:137057540..137057550,-#_4a7c20bd216a57c0900b7931809bd5ef | p@chr5:137057540..137057550, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr15:101593988..101593997,-#_4a7c20bd216a57c0900b7931809bd5ef | p1@Krt74 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr4:113836063..113836075,+#_4a7c20bd216a57c0900b7931809bd5ef | p1@Skint11 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr1:191609138..191609151,+#_4a7c20bd216a57c0900b7931809bd5ef | p@chr1:191609138..191609151, + |
| 1.4e-86 | FFCP PHASE1:Mm9::chr11:36246521..36246530,-#_4a7c20bd216a57c0900b7931809bd5ef | p@chr11:36246521..36246530, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr4:138313406..138313411,-#_4a7c20bd216a57c0900b7931809bd5ef | p2@Pla2g2f |
| 1.4e-86 | FFCP PHASE1:Mm9::chr11:94981134..94981147,+#_4a7c20bd216a57c0900b7931809bd5ef | p2@Dlx3 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr4:113836042..113836053,+#_4a7c20bd216a57c0900b7931809bd5ef | p2@Skint11 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr11:94981134..94981147,+#_4a7c20bd216a57c0900b7931809bd5ef | p2@Dlx3 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr11:99227413..99227429,-#_4a7c20bd216a57c0900b7931809bd5ef | p@chr11:99227413..99227429, - |
| 1.4e-86 | FFCP PHASE1:Mm9::chr15:101593988..101593997,-#_4a7c20bd216a57c0900b7931809bd5ef | p1@Krt74 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr11:99227413..99227429,-#_4a7c20bd216a57c0900b7931809bd5ef | p@chr11:99227413..99227429, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr4:113836063..113836075,+#_4a7c20bd216a57c0900b7931809bd5ef | p1@Skint11 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr5:137057540..137057550,-#_4a7c20bd216a57c0900b7931809bd5ef | p@chr5:137057540..137057550, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr11:99207849..99207853,-#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr11:99207849..99207853, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr5:137057490..137057506,-#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr5:137057490..137057506, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr1:133938531..133938534,-#_8ca31f84a07f8453d4b6326c29121fd0 | p6@Mfsd4 |
| 1.07e-72 | FFCP PHASE2:Mm9::chr3:90343597..90343613,+#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr3:90343597..90343613, + |
| 1.07e-72 | FFCP PHASE1:Mm9::chr1:46949894..46949911,-#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr1:46949894..46949911, - |
| 1.07e-72 | FFCP PHASE2:Mm9::chr11:99207849..99207853,-#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr11:99207849..99207853, - |
| 1.07e-72 | FFCP PHASE2:Mm9::chr5:137057441..137057450,-#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr5:137057441..137057450, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr3:90343597..90343613,+#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr3:90343597..90343613, + |
| 1.07e-72 | FFCP PHASE2:Mm9::chr7:97432305..97432311,+#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr7:97432305..97432311, + |
| 1.07e-72 | FFCP PHASE2:Mm9::chr5:137057490..137057506,-#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr5:137057490..137057506, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr15:83953604..83953633,-#_8ca31f84a07f8453d4b6326c29121fd0 | p1@Pnpla5 |
| 1.07e-72 | FFCP PHASE1:Mm9::chr7:97432305..97432311,+#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr7:97432305..97432311, + |
| 1.07e-72 | FFCP PHASE2:Mm9::chr7:127260268..127260277,+#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr7:127260268..127260277, + |
| 1.07e-72 | FFCP PHASE2:Mm9::chr1:133938531..133938534,-#_8ca31f84a07f8453d4b6326c29121fd0 | p6@Mfsd4 |
| 1.07e-72 | FFCP PHASE1:Mm9::chr7:127260268..127260277,+#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr7:127260268..127260277, + |
| 1.07e-72 | FFCP PHASE2:Mm9::chr15:83953604..83953633,-#_8ca31f84a07f8453d4b6326c29121fd0 | p1@Pnpla5 |
| 1.07e-72 | FFCP PHASE1:Mm9::chr5:137057441..137057450,-#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr5:137057441..137057450, - |
| 1.07e-72 | FFCP PHASE2:Mm9::chr1:46949894..46949911,-#_8ca31f84a07f8453d4b6326c29121fd0 | p@chr1:46949894..46949911, - |
| 1.5e-72 | FFCP PHASE1:Mm9::chr10:43724117..43724131,-#_f6d350ccc52e460e59045a63479f90bd | p@chr10:43724117..43724131, - |
| 1.5e-72 | FFCP PHASE2:Mm9::chr1:37973330..37973344,-#_f6d350ccc52e460e59045a63479f90bd | p1@Lyg2 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr10:66991117..66991146,+#_f6d350ccc52e460e59045a63479f90bd | p@chr10:66991117..66991146, + |
| 1.5e-72 | FFCP PHASE1:Mm9::chr10:66991117..66991146,+#_f6d350ccc52e460e59045a63479f90bd | p@chr10:66991117..66991146, + |
| 1.5e-72 | FFCP PHASE2:Mm9::chr3:138004932..138004945,+#_f6d350ccc52e460e59045a63479f90bd | p@chr3:138004932..138004945, + |
| 1.5e-72 | FFCP PHASE1:Mm9::chr1:37973257..37973271,-#_f6d350ccc52e460e59045a63479f90bd | p2@Lyg2 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr10:43724117..43724131,-#_f6d350ccc52e460e59045a63479f90bd | p@chr10:43724117..43724131, - |
| 1.5e-72 | FFCP PHASE1:Mm9::chr1:37973330..37973344,-#_f6d350ccc52e460e59045a63479f90bd | p1@Lyg2 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr13:112045218..112045226,+#_f6d350ccc52e460e59045a63479f90bd | p1@Actbl2 |
| 1.5e-72 | FFCP PHASE1:Mm9::chr6:134595955..134595965,-#_f6d350ccc52e460e59045a63479f90bd | p@chr6:134595955..134595965, - |
| 1.5e-72 | FFCP PHASE2:Mm9::chr6:97778311..97778326,+#_f6d350ccc52e460e59045a63479f90bd | p@chr6:97778311..97778326, + |
| 1.5e-72 | FFCP PHASE2:Mm9::chr6:134595955..134595965,-#_f6d350ccc52e460e59045a63479f90bd | p@chr6:134595955..134595965, - |
| 1.5e-72 | FFCP PHASE1:Mm9::chr13:112045218..112045226,+#_f6d350ccc52e460e59045a63479f90bd | p1@Actbl2 |
| 1.5e-72 | FFCP PHASE1:Mm9::chr3:138004932..138004945,+#_f6d350ccc52e460e59045a63479f90bd | p@chr3:138004932..138004945, + |
| 1.5e-72 | FFCP PHASE1:Mm9::chr6:97778311..97778326,+#_f6d350ccc52e460e59045a63479f90bd | p@chr6:97778311..97778326, + |
| 1.5e-72 | FFCP PHASE2:Mm9::chr1:37973257..37973271,-#_f6d350ccc52e460e59045a63479f90bd | p2@Lyg2 |
| 1.5e-72 | FFCP PHASE1:Mm9::chr15:25672069..25672077,+#_f6d350ccc52e460e59045a63479f90bd | p25@Myo10 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr15:25672069..25672077,+#_f6d350ccc52e460e59045a63479f90bd | p25@Myo10 |
| 2.1e-72 | FFCP PHASE2:Mm9::chr1:89485356..89485361,+#_3e56eaef0116e67704b474261f9ec142 | p@chr1:89485356..89485361, + |
| 2.1e-72 | FFCP PHASE2:Mm9::chr4:111707315..111707319,+#_3e56eaef0116e67704b474261f9ec142 | p@chr4:111707315..111707319, + |
| 2.1e-72 | FFCP PHASE1:Mm9::chr4:111707315..111707319,+#_3e56eaef0116e67704b474261f9ec142 | p@chr4:111707315..111707319, + |
| 2.1e-72 | FFCP PHASE2:Mm9::chr7:117436977..117436981,-#_3e56eaef0116e67704b474261f9ec142 | p@chr7:117436977..117436981, - |
| 2.1e-72 | FFCP PHASE2:Mm9::chr4:82496625..82496637,-#_3e56eaef0116e67704b474261f9ec142 | p6@Zdhhc21 |
| 2.1e-72 | FFCP PHASE1:Mm9::chr7:117436977..117436981,-#_3e56eaef0116e67704b474261f9ec142 | p@chr7:117436977..117436981, - |
| 2.1e-72 | FFCP PHASE1:Mm9::chr4:82496625..82496637,-#_3e56eaef0116e67704b474261f9ec142 | p6@Zdhhc21 |
| 2.1e-72 | FFCP PHASE1:Mm9::chr1:89485356..89485361,+#_3e56eaef0116e67704b474261f9ec142 | p@chr1:89485356..89485361, + |
| 4.13e-72 | FFCP PHASE2:Mm9::chr4:113672105..113672116,-#_189fdec95512facd01dedec09bd09f47 | p1@Skint5 |
| 4.13e-72 | FFCP PHASE1:Mm9::chr4:113672105..113672116,-#_189fdec95512facd01dedec09bd09f47 | p1@Skint5 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr11:99913595..99913606,+#_d316dbfacc4c9e7caad678b8131f5043 | p1@ENSMUST00000136820, p1@uc007lke.1 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr3:93247460..93247471,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr3:93247460..93247471, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:93247570..93247579,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr3:93247570..93247579, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr18:25099958..25099967,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr18:25099958..25099967, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr6:97778346..97778356,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr6:97778346..97778356, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr5:113617681..113617724,-#_d316dbfacc4c9e7caad678b8131f5043 | p@chr5:113617681..113617724, - |
| 1.65e-69 | FFCP PHASE1:Mm9::chr18:20631745..20631746,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr18:20631745..20631746, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr9:43876286..43876293,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr9:43876286..43876293, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr5:137057650..137057655,-#_d316dbfacc4c9e7caad678b8131f5043 | p@chr5:137057650..137057655, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr11:115168521..115168541,+#_d316dbfacc4c9e7caad678b8131f5043 | p1@Otop2 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr6:142831327..142831375,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr6:142831327..142831375, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:93247460..93247471,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr3:93247460..93247471, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr15:101770858..101770865,-#_d316dbfacc4c9e7caad678b8131f5043 | p2@Krt79 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:93249466..93249478,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr3:93249466..93249478, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr15:101770858..101770865,-#_d316dbfacc4c9e7caad678b8131f5043 | p2@Krt79 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr8:63958211..63958219,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr8:63958211..63958219, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr3:93248889..93248897,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr3:93248889..93248897, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr15:12444430..12444439,-#_d316dbfacc4c9e7caad678b8131f5043 | p@chr15:12444430..12444439, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr4:57351817..57351823,-#_d316dbfacc4c9e7caad678b8131f5043 | p@chr4:57351817..57351823, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr9:67169769..67169780,-#_d316dbfacc4c9e7caad678b8131f5043 | p@chr9:67169769..67169780, - |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:93248809..93248818,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr3:93248809..93248818, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr5:75107109..75107125,-#_d316dbfacc4c9e7caad678b8131f5043 | p@chr5:75107109..75107125, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr5:81472249..81472294,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr5:81472249..81472294, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr18:20631745..20631746,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr18:20631745..20631746, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr1:129125186..129125194,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr1:129125186..129125194, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:93248462..93248471,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr3:93248462..93248471, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr9:67169769..67169780,-#_d316dbfacc4c9e7caad678b8131f5043 | p@chr9:67169769..67169780, - |
| 1.65e-69 | FFCP PHASE1:Mm9::chr1:192537956..192537958,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr1:192537956..192537958, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr1:129125186..129125194,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr1:129125186..129125194, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr3:59629633..59629644,+#_d316dbfacc4c9e7caad678b8131f5043 | p@chr3:59629633..59629644, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr4:135527809..135527823,-#_d316dbfacc4c9e7caad678b8131f5043 | p4@Lypla2 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr11:99957587..99957593,-#_d316dbfacc4c9e7caad678b8131f5043 | p2@Krt35 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr1:46949977..46949981,-#_d316dbfacc4c9e7caad678b8131f5043 | p@chr1:46949977..46949981, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr4:82496602..82496610,-#_d316dbfacc4c9e7caad678b8131f5043 | p8@Zdhhc21 |
