UBERON:0002224: Difference between revisions
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|def="Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]." [FMA:7565, Wikipedia:Thoracic_cavity] | |def="Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]." [FMA:7565, Wikipedia:Thoracic_cavity] | ||
|xref=FMA:7565;;GAID:93;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png;;MA:0000032;;MESH:A.01.911.800;;ncithesaurus:Thoracic_Cavity;;OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg;;OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA;;SCTID:243949006 | |xref=FMA:7565;;GAID:93;;http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray846.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png;;MA:0000032;;MESH:A.01.911.800;;ncithesaurus:Thoracic_Cavity;;OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg;;OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA;;SCTID:243949006 | ||
|is_a=UBERON:0000464 | |is_a=UBERON:0000464 | ||
|synonym="cavity of chest" EXACT [];;"cavity of thorax" EXACT [];;"chest cavity" EXACT [];;"pectoral cavity" EXACT [];;"space of thoracic compartment" EXACT [FMA:7565] | |synonym="cavitas thoracis" RELATED LATIN [Wikipedia:Thoracic_cavity];;"cavity of chest" EXACT [];;"cavity of thorax" EXACT [];;"chest cavity" EXACT [];;"pectoral cavity" EXACT [];;"space of thoracic compartment" EXACT [FMA:7565] | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|alt_id=UBERON:FMA_7565-MA_0000032 | |alt_id=UBERON:FMA_7565-MA_0000032 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:01, 26 June 2012
| Name: | thoracic cavity | |
|---|---|---|
| Definition: | "Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]." [FMA:7565, Wikipedia:Thoracic_cavity] | |
| Xrefs: |
| |
| Synonyms: |
"cavitas thoracis" RELATED LATIN [Wikipedia:Thoracic_cavity] "cavity of chest" EXACT [] "cavity of thorax" EXACT [] "chest cavity" EXACT [] "pectoral cavity" EXACT [] "space of thoracic compartment" EXACT [FMA:7565] | |
| Comments: | This class was created automatically from a combination of ontologies | |
| Alt_id: | UBERON:FMA_7565-MA_0000032 | |
| Subset: | uberon_slim |
Gray846.png]
200px-Scheme_body_cavities-en.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000464(anatomical space) |
|---|
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10446-106F5
... further results Mouse (Mus musculus)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10446-106F5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002224 (thoracic cavity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
