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|namespace=
|namespace=
|def="The central region of trunk mesoderm. This tissue forms the notochord" [UBERON:cjm]
|def="The central region of trunk mesoderm. This tissue forms the notochord" [UBERON:cjm]
|xref=AAO:0000478;;EFO:0003426;;ZFA:0000091
|xref=AAO:0000478;;chordamesoderm;;EFO:0003426;;TAO:0000091;;ZFA:0000091
|is_a=UBERON:0005423
|is_a=UBERON:0005423
|synonym="axial chorda mesoderm" EXACT [ZFA:0000091];;"chorda mesoderm" EXACT [];;"presumptive notochord" EXACT [ZFA:0000091]
|synonym="axial chorda mesoderm" EXACT [ZFA:0000091];;"chorda mesoderm" EXACT [];;"dorsal mesoderm" EXACT [UBERONREF:0000002];;"presumptive notochord" EXACT [ZFA:0000091]
|comment=note that WP treats this as synonym of axial mesoderm
|comment=note that WP treats this as synonym of axial mesoderm
|alt_id=
|alt_id=
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0000922;;UBERON:0003068
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:05, 26 June 2012

Name:chordamesoderm
Definition:"The central region of trunk mesoderm. This tissue forms the notochord" [UBERON:cjm]
Xrefs:
links:

AAO:0000478
chordamesoderm:[1]
EFO:0003426
TAO:0000091

ZFA:0000091
Synonyms: "axial chorda mesoderm" EXACT [ZFA:0000091]
"chorda mesoderm" EXACT []
"dorsal mesoderm" EXACT [UBERONREF:0000002]
"presumptive notochord" EXACT [ZFA:0000091]
Comments:note that WP treats this as synonym of axial mesoderm

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)



Children

develops from:UBERON:0002328 (notochord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004880 (chordamesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.26e-98FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_04804a6035813f474aa2cd65f157988fp@chr3:174737010..174737023, +
8.26e-98FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_04804a6035813f474aa2cd65f157988fp@chr3:174737010..174737023, +
3.03e-84FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_d5f62b6399e7e50fd0b65a9d64062609p4@PAX1
3.03e-84FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_d5f62b6399e7e50fd0b65a9d64062609p4@PAX1
2.39e-66FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_b85240482f7d6aab27acac2a1ffcf584p@chr9:33028063..33028067, -
2.39e-66FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_b85240482f7d6aab27acac2a1ffcf584p@chr9:33028063..33028067, -
5.46e-60FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_b1e89bf65064d0724f7d5388059db3d9p@chr5:30104176..30104187, -
5.46e-60FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_b1e89bf65064d0724f7d5388059db3d9p@chr5:30104176..30104187, -
9.77e-45FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_69d400e86031c6bde26319e68a25179fp22@SNED1
9.77e-45FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_69d400e86031c6bde26319e68a25179fp22@SNED1
6.64e-41FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_8515b98e725edcb654cfcc3ce7a74071p15@SNED1
6.64e-41FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_8515b98e725edcb654cfcc3ce7a74071p15@SNED1
1.31e-40FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_9c4ce72e24e713d32de84e49da76438ap20@CAPZB
1.31e-40FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_9c4ce72e24e713d32de84e49da76438ap20@CAPZB
1.8e-38FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_06320e83f12abfe5fb5c8dff9c51ca9fp@chr2:12248310..12248334, -
1.8e-38FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_06320e83f12abfe5fb5c8dff9c51ca9fp@chr2:12248310..12248334, -
2.75e-34FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_36ac732b005ddfc0166e6dcd9bccc46ep6@SIX4
2.75e-34FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_36ac732b005ddfc0166e6dcd9bccc46ep6@SIX4
5.96e-34FFCP PHASE1:Hg19::chr13:51101468..51101499,-#_b15c8bd94313b14eca4bfc0784746e29p1@ENST00000428276
5.96e-34FFCP PHASE2:Hg19::chr13:51101468..51101499,-#_b15c8bd94313b14eca4bfc0784746e29p1@ENST00000428276
5.96e-34FFCP PHASE1:Hg19::chr4:88727274..88727278,+#_b15c8bd94313b14eca4bfc0784746e29p@chr4:88727274..88727278, +
5.96e-34FFCP PHASE1:Hg19::chr11:93468399..93468405,-#_b15c8bd94313b14eca4bfc0784746e29p19@TAF1D, p1@SNORA40
5.96e-34FFCP PHASE2:Hg19::chr4:88727274..88727278,+#_b15c8bd94313b14eca4bfc0784746e29p@chr4:88727274..88727278, +
5.96e-34FFCP PHASE2:Hg19::chr11:93468399..93468405,-#_b15c8bd94313b14eca4bfc0784746e29p19@TAF1D, p1@SNORA40
2.09e-33FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_576ea65401b6ee08628e3737f32442f4p4@NKX3-2
2.09e-33FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_576ea65401b6ee08628e3737f32442f4p4@NKX3-2
4.01e-31FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_fa9ba24d7c172d6928392a564ac38467p19@HDAC9
4.01e-31FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_fa9ba24d7c172d6928392a564ac38467p19@HDAC9
1.98e-30FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_004d9dff4d1667066275305c1be3a077p@chr2:241897125..241897142, -
1.98e-30FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_004d9dff4d1667066275305c1be3a077p@chr2:241897125..241897142, -
4.84e-30FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_f54876704a77e0b1023e24c172782c1bp@chr3:80727046..80727051, -
4.84e-30FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_f54876704a77e0b1023e24c172782c1bp@chr3:80727046..80727051, -
7.46e-30FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_4e8e522f4a1d186d9e208ea7d5fc30c3p@chr7:158224707..158224729, -
7.46e-30FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_4e8e522f4a1d186d9e208ea7d5fc30c3p@chr7:158224707..158224729, -
1.48e-29FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_3c21000ec16fc802f6abe6a69aa9bf6cp@chr1:65888177..65888194, +
1.48e-29FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_3c21000ec16fc802f6abe6a69aa9bf6cp@chr1:65888177..65888194, +
2.72e-28FFCP PHASE1:Hg19::chr14:100848311..100848321,+#_baddf03b92d746c51c8c9297d9234245p5@WDR25
2.72e-28FFCP PHASE2:Hg19::chr14:100848311..100848321,+#_baddf03b92d746c51c8c9297d9234245p5@WDR25
3.26e-27FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_f480bfae7decf2a59fb600532ddc3645p1@MGC27382
3.26e-27FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_f480bfae7decf2a59fb600532ddc3645p1@MGC27382
6.92e-27FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_cd6baccb11e9111ddb689453c491d6eep@chr1:19778678..19778689, -
6.92e-27FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_cd6baccb11e9111ddb689453c491d6eep@chr1:19778678..19778689, -
1.46e-26FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_63bf3b8b40e4a4aa8a2575cc713cdc00p18@HDAC9
1.46e-26FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_63bf3b8b40e4a4aa8a2575cc713cdc00p18@HDAC9
1.74e-26FFCP PHASE1:Hg19::chr4:156129991..156130013,+#_51a9a690c125bbece3103a12f0ce8206p2@NPY2R
1.74e-26FFCP PHASE2:Hg19::chr4:156129991..156130013,+#_51a9a690c125bbece3103a12f0ce8206p2@NPY2R
7.41e-26FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_210403069c1b791bf80a1d8d22e14b20p@chr14:61113228..61113233, -
7.41e-26FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_210403069c1b791bf80a1d8d22e14b20p@chr14:61113228..61113233, -
2.04e-25FFCP PHASE1:Hg19::chr7:27212374..27212387,-#_cda5a78c9dcec163f1a82bbd3629e9b1p12@HOXA10
2.04e-25FFCP PHASE2:Hg19::chr7:27212374..27212387,-#_cda5a78c9dcec163f1a82bbd3629e9b1p12@HOXA10
6.22e-25FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_5bf8e3feeda1cf191440dd02d75f5b2bp1@uc010aki.1
6.22e-25FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_5bf8e3feeda1cf191440dd02d75f5b2bp1@uc010aki.1
9.49e-25FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_38d23d35ab2382d79a7d05785cc77397p1@PAX1
9.49e-25FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_38d23d35ab2382d79a7d05785cc77397p1@PAX1
4.58e-24FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_5e2b7b6b0a788df18cf264b6f75e6564p@chr5:140887761..140887777, +
4.58e-24FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_5e2b7b6b0a788df18cf264b6f75e6564p@chr5:140887761..140887777, +
5.35e-24FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_8b3e6d33de83f17a8a581df6a0a90202p2@PAX1
5.35e-24FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_8b3e6d33de83f17a8a581df6a0a90202p2@PAX1
8.55e-24FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_230564567e06f1c9c3a80cac46a6b8b2p16@HDAC9
8.55e-24FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_230564567e06f1c9c3a80cac46a6b8b2p16@HDAC9
2.01e-23FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_f257289c2fa48463ddc1537c5199d8dbp4@NUP54
2.01e-23FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_f257289c2fa48463ddc1537c5199d8dbp4@NUP54
2.28e-23FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_8de8bc1fb3e296fe2cd4088556f65c26p1@NKX3-2
2.28e-23FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_8de8bc1fb3e296fe2cd4088556f65c26p1@NKX3-2
3.27e-23FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_dad9bc2a30f1158e880b77c15b6b6d52p3@uc010aki.1
3.27e-23FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_dad9bc2a30f1158e880b77c15b6b6d52p3@uc010aki.1
1.25e-22FFCP PHASE1:Hg19::chr1:78695343..78695353,+#_dbc63beeb1d1ee0439a77309bb905b95p2@ENST00000413519
1.25e-22FFCP PHASE2:Hg19::chr1:78695343..78695353,+#_dbc63beeb1d1ee0439a77309bb905b95p2@ENST00000413519
1.46e-22FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_5f88ff0fa634fb5aa6fea7c56a9ab353p12@CDK5RAP2
1.46e-22FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_5f88ff0fa634fb5aa6fea7c56a9ab353p12@CDK5RAP2
9.47e-22FFCP PHASE1:Hg19::chr1:171076859..171076870,+#_4379cbe851f921df328c9b5e989258fbp@chr1:171076859..171076870, +
9.47e-22FFCP PHASE2:Hg19::chr1:171076859..171076870,+#_4379cbe851f921df328c9b5e989258fbp@chr1:171076859..171076870, +
1.35e-21FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_35f30a2fbd1f47730b1c8c1c5e29fcccp@chr7:100202784..100202796, -
1.35e-21FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_35f30a2fbd1f47730b1c8c1c5e29fcccp@chr7:100202784..100202796, -
3.83e-21FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_b071b4f9e451ae84ba76462c7e64feb3p4@PAX9
3.83e-21FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_b071b4f9e451ae84ba76462c7e64feb3p4@PAX9
4.02e-21FFCP PHASE1:Hg19::chr3:176765178..176765190,-#_d692d3631b95ef817205451dd537ea67p@chr3:176765178..176765190, -
4.02e-21FFCP PHASE2:Hg19::chr3:176765178..176765190,-#_d692d3631b95ef817205451dd537ea67p@chr3:176765178..176765190, -
4.06e-21FFCP PHASE1:Hg19::chr1:19810947..19810977,-#_6561f4d122b752cb996efc461dc88aeap17@CAPZB
4.06e-21FFCP PHASE2:Hg19::chr1:19810947..19810977,-#_6561f4d122b752cb996efc461dc88aeap17@CAPZB
5.43e-21FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_e7a5f7e6ad9532c8163d41bd4f272c35p8@HOXC6
5.43e-21FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_e7a5f7e6ad9532c8163d41bd4f272c35p8@HOXC6
4.94e-20FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_cb4a5f677a09dd57c7ddc00097d1afabp@chr17:38613285..38613298, -
4.94e-20FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_cb4a5f677a09dd57c7ddc00097d1afabp@chr17:38613285..38613298, -
9.53e-20FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_557386db5673b27531999b3bc7bbe013p6@WISP2
9.53e-20FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_557386db5673b27531999b3bc7bbe013p6@WISP2
1.46e-19FFCP PHASE1:Hg19::chr1:78958320..78958332,+#_a782e9cce51d8fd0410fc8871b6ddff1p2@PTGFR
1.46e-19FFCP PHASE2:Hg19::chr1:78958320..78958332,+#_a782e9cce51d8fd0410fc8871b6ddff1p2@PTGFR
2.04e-19FFCP PHASE1:Hg19::chr4:70707689..70707711,-#_9bd36f72c830a5fdd97c89ef01921e9ap@chr4:70707689..70707711, -
2.04e-19FFCP PHASE2:Hg19::chr4:70707689..70707711,-#_9bd36f72c830a5fdd97c89ef01921e9ap@chr4:70707689..70707711, -
3.75e-19FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_3dcaa8c7fd991d053e8f24c4fbd8515ep1@ENST00000555639
3.75e-19FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_3dcaa8c7fd991d053e8f24c4fbd8515ep1@ENST00000555639
4.68e-19FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_dce1b9ed9e87eb581f08e40f7c02d350p1@ENST00000449986
4.68e-19FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_dce1b9ed9e87eb581f08e40f7c02d350p1@ENST00000449986
1.04e-18FFCP PHASE2:Hg19::chr3:158390171..158390180,-#_987e30939dcbb096f71fabd2ec903edap3@LXN
1.04e-18FFCP PHASE1:Hg19::chr3:158390171..158390180,-#_987e30939dcbb096f71fabd2ec903edap3@LXN
5.12e-18FFCP PHASE1:Hg19::chr6:112375300..112375334,+#_60c38cda633deff37487c4e4773518bep1@WISP3
5.12e-18FFCP PHASE2:Hg19::chr6:112375300..112375334,+#_60c38cda633deff37487c4e4773518bep1@WISP3
9.14e-18FFCP PHASE1:Hg19::chr8:77595678..77595688,+#_bdb76b0944e285b32e346345b0767406p9@ZFHX4
9.14e-18FFCP PHASE2:Hg19::chr8:77595678..77595688,+#_bdb76b0944e285b32e346345b0767406p9@ZFHX4

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