CL:0000039: Difference between revisions
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|def="A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544] | |def="A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544] | ||
|xref= | |xref= | ||
|is_a= | |is_a=CL:0000548 | ||
|synonym= | |synonym= | ||
|comment=Originally this term had some plant germ line cell children. | |comment=Originally this term had some plant germ line cell children. | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from=CL:0002371 | ||
|union_of= | |union_of= | ||
|created_by= | |created_by= | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= |
Revision as of 17:24, 26 June 2012
Name: | germ line cell |
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Namespace: | cell |
Definition: | "A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544] |
Comments: | Originally this term had some plant germ line cell children. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000548(animal cell) |
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disjoint_from: | CL:0002371(somatic cell) |
Children
is a: | CL:0000586 (germ cell) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10618-108G6 (choriocarcinoma cell line:T3M-3)
- 10785-110H2 (choriocarcinoma cell line:SCH)
- 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
- 10799-110I7
Mouse (Mus musculus)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10618-108G6 (choriocarcinoma cell line:T3M-3)
- 10785-110H2 (choriocarcinoma cell line:SCH)
- 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
- 10799-110I7
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000039 (germ line cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data