Personal tools

CL:0000083: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000083
|id=CL:0000083
|name=exocrine pancreas cell
|name=epithelial cell of pancreas;;exocrine pancreas cell
|namespace=efo
|namespace=cell;;efo
|def="An epithelial cell of the pancreas." [GOC:tfm]
|def="An epithelial cell of the pancreas." [GOC:tfm]
|xref=BTO:0000028
|xref=BTO:0000028
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000223
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001264
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:24, 26 June 2012

Name:epithelial cell of pancreas;;exocrine pancreas cell
Namespace:cell;;efo
Definition:"An epithelial cell of the pancreas." [GOC:tfm]
Xrefs:
links:
BTO:0000028


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000066(epithelial cell),CL:0002371(somatic cell),EFO:0002966()



Children


is a:FF:0000130 (pancreatic epithelial cell),CL:0000169 (type B pancreatic cell),CL:0000173 (pancreatic D cell),FF:0100304 (PANC-1 cell),FF:0101521 (pancreatic adenocarcinoma cell line),FF:10438-106E6 (ductal cell carcinoma cell line:KLM-1),FF:10488-107B2 (ductal cell carcinoma cell line:MIA Paca2),FF:10531-107F9 (),FF:10543-107H3 (),FF:10797-110I5 (tubular adenocarcinoma cell line:SUIT-2)
derives from:FF:0103533 (NOR-P1 cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000083 (epithelial cell of pancreas;;exocrine pancreas cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data