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Latest revision as of 17:25, 26 June 2012

Name:mesenchyme condensation cell
Namespace:cell
Definition:"A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors." [GOC:tfm, PMID:5025404]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000134(mesenchymal cell)



Children


develops from:CL:0000375 (osteoprogenitor cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000335 (mesenchyme condensation cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.65e-72FFCP PHASE1:Hg19::chr12:53729525..53729541,-#_8909ac6472f83a1a063f0dc743b0c619p5@SP7
6.65e-72FFCP PHASE2:Hg19::chr12:53729525..53729541,-#_8909ac6472f83a1a063f0dc743b0c619p5@SP7
6.65e-72FFCP PHASE1:Hg19::chr8:38470503..38470508,+#_8909ac6472f83a1a063f0dc743b0c619p@chr8:38470503..38470508, +
6.65e-72FFCP PHASE2:Hg19::chr8:38470503..38470508,+#_8909ac6472f83a1a063f0dc743b0c619p@chr8:38470503..38470508, +
2.16e-54FFCP PHASE2:Hg19::chr6:36733583..36733590,-#_2a5e664793fabc5fc3f550274576e60ap@chr6:36733583..36733590, -
2.16e-54FFCP PHASE1:Hg19::chr12:91395963..91395968,-#_2a5e664793fabc5fc3f550274576e60ap@chr12:91395963..91395968, -
2.16e-54FFCP PHASE1:Hg19::chr11:124480065..124480072,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480065..124480072, -
2.16e-54FFCP PHASE2:Hg19::chr11:124479851..124479862,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124479851..124479862, -
2.16e-54FFCP PHASE2:Hg19::chr6:45296391..45296400,+#_2a5e664793fabc5fc3f550274576e60ap52@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr11:124482705..124482719,+#_2a5e664793fabc5fc3f550274576e60ap@chr11:124482705..124482719, +
2.16e-54FFCP PHASE1:Hg19::chr1:77864109..77864116,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:77864109..77864116, +
2.16e-54FFCP PHASE2:Hg19::chr12:91395963..91395968,-#_2a5e664793fabc5fc3f550274576e60ap@chr12:91395963..91395968, -
2.16e-54FFCP PHASE1:Hg19::chr11:124480073..124480086,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480073..124480086, -
2.16e-54FFCP PHASE2:Hg19::chr1:77864109..77864116,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:77864109..77864116, +
2.16e-54FFCP PHASE2:Hg19::chr11:124480065..124480072,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480065..124480072, -
2.16e-54FFCP PHASE1:Hg19::chr2:37593656..37593667,+#_2a5e664793fabc5fc3f550274576e60ap@chr2:37593656..37593667, +
2.16e-54FFCP PHASE1:Hg19::chr6:36733547..36733556,-#_2a5e664793fabc5fc3f550274576e60ap@chr6:36733547..36733556, -
2.16e-54FFCP PHASE2:Hg19::chr4:88731810..88731821,+#_2a5e664793fabc5fc3f550274576e60ap@chr4:88731810..88731821, +
2.16e-54FFCP PHASE1:Hg19::chr11:124481316..124481334,+#_2a5e664793fabc5fc3f550274576e60ap1@PANX3
2.16e-54FFCP PHASE1:Hg19::chr4:88731810..88731821,+#_2a5e664793fabc5fc3f550274576e60ap@chr4:88731810..88731821, +
2.16e-54FFCP PHASE1:Hg19::chr9:72436290..72436302,-#_2a5e664793fabc5fc3f550274576e60ap@chr9:72436290..72436302, -
2.16e-54FFCP PHASE2:Hg19::chr11:124480073..124480086,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480073..124480086, -
2.16e-54FFCP PHASE1:Hg19::chr1:62392583..62392613,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392583..62392613, +
2.16e-54FFCP PHASE2:Hg19::chr2:37593656..37593667,+#_2a5e664793fabc5fc3f550274576e60ap@chr2:37593656..37593667, +
2.16e-54FFCP PHASE2:Hg19::chr6:36733547..36733556,-#_2a5e664793fabc5fc3f550274576e60ap@chr6:36733547..36733556, -
2.16e-54FFCP PHASE2:Hg19::chr9:72436290..72436302,-#_2a5e664793fabc5fc3f550274576e60ap@chr9:72436290..72436302, -
2.16e-54FFCP PHASE2:Hg19::chr1:62392583..62392613,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392583..62392613, +
2.16e-54FFCP PHASE1:Hg19::chr6:45295874..45295877,+#_2a5e664793fabc5fc3f550274576e60ap47@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr12:53729546..53729565,-#_2a5e664793fabc5fc3f550274576e60ap4@SP7
2.16e-54FFCP PHASE1:Hg19::chr1:199050926..199050944,-#_2a5e664793fabc5fc3f550274576e60ap@chr1:199050926..199050944, -
2.16e-54FFCP PHASE1:Hg19::chr11:124481361..124481366,+#_2a5e664793fabc5fc3f550274576e60ap2@PANX3
2.16e-54FFCP PHASE1:Hg19::chr6:45296266..45296277,+#_2a5e664793fabc5fc3f550274576e60ap34@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr11:124481316..124481334,+#_2a5e664793fabc5fc3f550274576e60ap1@PANX3
2.16e-54FFCP PHASE1:Hg19::chr1:62392630..62392651,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392630..62392651, +
2.16e-54FFCP PHASE2:Hg19::chr6:45295874..45295877,+#_2a5e664793fabc5fc3f550274576e60ap47@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr9:116398779..116398800,+#_2a5e664793fabc5fc3f550274576e60ap@chr9:116398779..116398800, +
2.16e-54FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_2a5e664793fabc5fc3f550274576e60ap@chr6:155427848..155427862, +
2.16e-54FFCP PHASE2:Hg19::chr1:199050926..199050944,-#_2a5e664793fabc5fc3f550274576e60ap@chr1:199050926..199050944, -
2.16e-54FFCP PHASE1:Hg19::chr11:124479851..124479862,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124479851..124479862, -
2.16e-54FFCP PHASE2:Hg19::chr12:53729546..53729565,-#_2a5e664793fabc5fc3f550274576e60ap4@SP7
2.16e-54FFCP PHASE2:Hg19::chr1:62392630..62392651,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392630..62392651, +
2.16e-54FFCP PHASE2:Hg19::chr6:45296266..45296277,+#_2a5e664793fabc5fc3f550274576e60ap34@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr9:116398779..116398800,+#_2a5e664793fabc5fc3f550274576e60ap@chr9:116398779..116398800, +
2.16e-54FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_2a5e664793fabc5fc3f550274576e60ap@chr6:155427848..155427862, +
2.16e-54FFCP PHASE1:Hg19::chr6:36733583..36733590,-#_2a5e664793fabc5fc3f550274576e60ap@chr6:36733583..36733590, -
2.16e-54FFCP PHASE1:Hg19::chr11:124482705..124482719,+#_2a5e664793fabc5fc3f550274576e60ap@chr11:124482705..124482719, +
2.16e-54FFCP PHASE1:Hg19::chr6:45296391..45296400,+#_2a5e664793fabc5fc3f550274576e60ap52@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr11:124481361..124481366,+#_2a5e664793fabc5fc3f550274576e60ap2@PANX3
1.03e-43FFCP PHASE2:Hg19::chr7:96654015..96654018,-#_b21e3e52d7b51dbc4cd27f0962bb3c23p3@DLX5
1.03e-43FFCP PHASE1:Hg19::chr7:96654015..96654018,-#_b21e3e52d7b51dbc4cd27f0962bb3c23p3@DLX5
4.07e-41FFCP PHASE1:Hg19::chr6:36733594..36733607,-#_42a8690b2aa5e91a5957c785b2f766adp@chr6:36733594..36733607, -
4.07e-41FFCP PHASE1:Hg19::chr12:53721918..53721923,-#_42a8690b2aa5e91a5957c785b2f766adp@chr12:53721918..53721923, -
4.07e-41FFCP PHASE2:Hg19::chr6:36733594..36733607,-#_42a8690b2aa5e91a5957c785b2f766adp@chr6:36733594..36733607, -
4.07e-41FFCP PHASE2:Hg19::chr12:53721918..53721923,-#_42a8690b2aa5e91a5957c785b2f766adp@chr12:53721918..53721923, -
4.07e-41FFCP PHASE1:Hg19::chr16:53707116..53707125,-#_42a8690b2aa5e91a5957c785b2f766adp@chr16:53707116..53707125, -
4.07e-41FFCP PHASE2:Hg19::chr16:53707116..53707125,-#_42a8690b2aa5e91a5957c785b2f766adp@chr16:53707116..53707125, -
4.07e-41FFCP PHASE1:Hg19::chr6:143447228..143447237,+#_42a8690b2aa5e91a5957c785b2f766adp16@AIG1
4.07e-41FFCP PHASE2:Hg19::chr6:143447228..143447237,+#_42a8690b2aa5e91a5957c785b2f766adp16@AIG1
4.67e-41FFCP PHASE1:Hg19::chr17:1932231..1932269,+#_8b166b914a231140259d0e5491475769p@chr17:1932231..1932269, +
4.67e-41FFCP PHASE2:Hg19::chr17:1932231..1932269,+#_8b166b914a231140259d0e5491475769p@chr17:1932231..1932269, +
4.67e-41FFCP PHASE2:Hg19::chr4:88732513..88732528,+#_8b166b914a231140259d0e5491475769p@chr4:88732513..88732528, +
4.67e-41FFCP PHASE1:Hg19::chr4:88732513..88732528,+#_8b166b914a231140259d0e5491475769p@chr4:88732513..88732528, +
5.35e-41FFCP PHASE1:Hg19::chr2:53859899..53859908,-#_c379e487e061c4470afa68051a333cb7p@chr2:53859899..53859908, -
5.35e-41FFCP PHASE2:Hg19::chr2:53859899..53859908,-#_c379e487e061c4470afa68051a333cb7p@chr2:53859899..53859908, -
6.8e-37FFCP PHASE1:Hg19::chr18:66061928..66061937,-#_4a330bbe883d851fed699fc1fd379898p@chr18:66061928..66061937, -
6.8e-37FFCP PHASE2:Hg19::chr4:88723803..88723839,+#_4a330bbe883d851fed699fc1fd379898p@chr4:88723803..88723839, +
6.8e-37FFCP PHASE2:Hg19::chr17:79968458..79968470,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79968458..79968470, +
6.8e-37FFCP PHASE2:Hg19::chr19:28260754..28260759,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28260754..28260759, +
6.8e-37FFCP PHASE1:Hg19::chr4:88723803..88723839,+#_4a330bbe883d851fed699fc1fd379898p@chr4:88723803..88723839, +
6.8e-37FFCP PHASE1:Hg19::chr17:79968458..79968470,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79968458..79968470, +
6.8e-37FFCP PHASE2:Hg19::chr8:134021602..134021610,+#_4a330bbe883d851fed699fc1fd379898p@chr8:134021602..134021610, +
6.8e-37FFCP PHASE1:Hg19::chr11:81619863..81619881,+#_4a330bbe883d851fed699fc1fd379898p@chr11:81619863..81619881, +
6.8e-37FFCP PHASE2:Hg19::chr2:128896491..128896497,+#_4a330bbe883d851fed699fc1fd379898p@chr2:128896491..128896497, +
6.8e-37FFCP PHASE2:Hg19::chr11:131213225..131213274,+#_4a330bbe883d851fed699fc1fd379898p@chr11:131213225..131213274, +
6.8e-37FFCP PHASE1:Hg19::chr19:28236792..28236797,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28236792..28236797, +
6.8e-37FFCP PHASE2:Hg19::chr1:21912937..21912944,+#_4a330bbe883d851fed699fc1fd379898p2@ENST00000457706
6.8e-37FFCP PHASE1:Hg19::chr6:160023967..160023971,+#_4a330bbe883d851fed699fc1fd379898p@chr6:160023967..160023971, +
6.8e-37FFCP PHASE1:Hg19::chr1:112316957..112316974,+#_4a330bbe883d851fed699fc1fd379898p@chr1:112316957..112316974, +
6.8e-37FFCP PHASE1:Hg19::chrX:57934585..57934628,-#_4a330bbe883d851fed699fc1fd379898p@chrX:57934585..57934628, -
6.8e-37FFCP PHASE1:Hg19::chr8:134021602..134021610,+#_4a330bbe883d851fed699fc1fd379898p@chr8:134021602..134021610, +
6.8e-37FFCP PHASE1:Hg19::chr2:128896491..128896497,+#_4a330bbe883d851fed699fc1fd379898p@chr2:128896491..128896497, +
6.8e-37FFCP PHASE2:Hg19::chrX:58230080..58230084,-#_4a330bbe883d851fed699fc1fd379898p@chrX:58230080..58230084, -
6.8e-37FFCP PHASE1:Hg19::chr19:28163893..28163904,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28163893..28163904, +
6.8e-37FFCP PHASE2:Hg19::chr19:28198123..28198149,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28198123..28198149, +
6.8e-37FFCP PHASE2:Hg19::chr4:188536873..188536891,-#_4a330bbe883d851fed699fc1fd379898p@chr4:188536873..188536891, -
6.8e-37FFCP PHASE2:Hg19::chr17:4705621..4705645,-#_4a330bbe883d851fed699fc1fd379898p@chr17:4705621..4705645, -
6.8e-37FFCP PHASE1:Hg19::chr8:97570368..97570378,+#_4a330bbe883d851fed699fc1fd379898p@chr8:97570368..97570378, +
6.8e-37FFCP PHASE1:Hg19::chr19:45821290..45821301,-#_4a330bbe883d851fed699fc1fd379898p@chr19:45821290..45821301, -
6.8e-37FFCP PHASE1:Hg19::chr13:42264610..42264621,-#_4a330bbe883d851fed699fc1fd379898p@chr13:42264610..42264621, -
6.8e-37FFCP PHASE1:Hg19::chr11:124489771..124489792,+#_4a330bbe883d851fed699fc1fd379898p@chr11:124489771..124489792, +
6.8e-37FFCP PHASE1:Hg19::chr6:81430111..81430117,+#_4a330bbe883d851fed699fc1fd379898p@chr6:81430111..81430117, +
6.8e-37FFCP PHASE1:Hg19::chr4:188536873..188536891,-#_4a330bbe883d851fed699fc1fd379898p@chr4:188536873..188536891, -
6.8e-37FFCP PHASE2:Hg19::chr19:28236792..28236797,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28236792..28236797, +
6.8e-37FFCP PHASE1:Hg19::chr4:16020432..16020477,-#_4a330bbe883d851fed699fc1fd379898p@chr4:16020432..16020477, -
6.8e-37FFCP PHASE1:Hg19::chr19:28198179..28198195,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28198179..28198195, +
6.8e-37FFCP PHASE1:Hg19::chr9:29940198..29940204,+#_4a330bbe883d851fed699fc1fd379898p@chr9:29940198..29940204, +
6.8e-37FFCP PHASE2:Hg19::chr6:160023967..160023971,+#_4a330bbe883d851fed699fc1fd379898p@chr6:160023967..160023971, +
6.8e-37FFCP PHASE2:Hg19::chr1:112316957..112316974,+#_4a330bbe883d851fed699fc1fd379898p@chr1:112316957..112316974, +
6.8e-37FFCP PHASE2:Hg19::chrX:57934585..57934628,-#_4a330bbe883d851fed699fc1fd379898p@chrX:57934585..57934628, -
6.8e-37FFCP PHASE1:Hg19::chr11:46326686..46326700,+#_4a330bbe883d851fed699fc1fd379898p@chr11:46326686..46326700, +

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