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|id=CL:0000789
|id=CL:0000789
|name=alpha-beta T cell
|name=alpha-beta T cell
|namespace=efo
|namespace=cell;;efo
|def="A T cell that expresses an alpha-beta T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149]
|def="A T cell that expresses an alpha-beta T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149]
|xref=
|xref=
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:26, 26 June 2012

Name:alpha-beta T cell
Namespace:cell;;efo
Definition:"A T cell that expresses an alpha-beta T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "alpha-beta T lymphocyte" EXACT []
"alpha-beta T-cell" EXACT []
"alpha-beta T-lymphocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000084(T cell)
disjoint_from:CL:0000798(gamma-delta T cell)



Children


is a:CL:0000790 (immature alpha-beta T cell),CL:0000791 (mature alpha-beta T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000789 (alpha-beta T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.82e-125FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_5f1893d085f8094d793789f7db20c059p@chr5:35859622..35859626, +
4.82e-125FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_5f1893d085f8094d793789f7db20c059p@chr5:35859622..35859626, +
2.55e-96FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_4a5fd1fe7cc79ea69e4ba0c900e31a10p@chr15:89179440..89179457, -
2.55e-96FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_4a5fd1fe7cc79ea69e4ba0c900e31a10p@chr15:89179440..89179457, -
1.42e-94FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_7b05b25412418bcfe2d365e2b75f3d7bp@chr5:35854487..35854499, -
1.42e-94FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_7b05b25412418bcfe2d365e2b75f3d7bp@chr5:35854487..35854499, -
1.09e-92FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_7817f69b372c72c8c6e3286dfc64152cp@chr5:35854779..35854826, +
1.09e-92FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_7817f69b372c72c8c6e3286dfc64152cp@chr5:35854779..35854826, +
4.33e-92FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_f5dd3e9a4347e3287ef98a84b663f5e9p@chr4:103551892..103551903, -
4.33e-92FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_f5dd3e9a4347e3287ef98a84b663f5e9p@chr4:103551892..103551903, -
1.97e-90FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_cc7a9b0c0bd5ac2983837e2211836993p@chr5:35856882..35856909, -
1.97e-90FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_cc7a9b0c0bd5ac2983837e2211836993p@chr5:35856882..35856909, -
2.93e-90FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_b16160d0ad2d94e961a3806bca441253p1@GTSCR1
2.93e-90FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_b16160d0ad2d94e961a3806bca441253p1@GTSCR1
5.78e-88FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_eb3b4db570c6a956a4f26bb64d3bb809p@chr7:97880779..97880793, +
5.78e-88FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_eb3b4db570c6a956a4f26bb64d3bb809p@chr7:97880779..97880793, +
8.73e-88FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_5309d9a6e21c1ed8d6cfc45e15c76cb8p@chr1:25255894..25255906, +
8.73e-88FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_5309d9a6e21c1ed8d6cfc45e15c76cb8p@chr1:25255894..25255906, +
4.59e-87FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_563e369f0c5c47dc280b964c033970b1p10@HNRPLL
4.59e-87FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_563e369f0c5c47dc280b964c033970b1p10@HNRPLL
1.31e-86FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_4c63b74c7d46234b4003b4b0967806acp1@ENSMUST00000103733
1.31e-86FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_4c63b74c7d46234b4003b4b0967806acp3@Tnfrsf25
1.31e-86FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_4c63b74c7d46234b4003b4b0967806acp@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_4c63b74c7d46234b4003b4b0967806acp1@uc007tsm.1
1.31e-86FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_4c63b74c7d46234b4003b4b0967806acp@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_4c63b74c7d46234b4003b4b0967806acp@chr19:10869146..10869168, -
1.31e-86FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_4c63b74c7d46234b4003b4b0967806acp1@uc007tsm.1
1.31e-86FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_4c63b74c7d46234b4003b4b0967806acp@chr11:99015330..99015341, -
1.31e-86FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_4c63b74c7d46234b4003b4b0967806acp@chr19:10869146..10869168, -
1.31e-86FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_4c63b74c7d46234b4003b4b0967806acp@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_4c63b74c7d46234b4003b4b0967806acp@chr11:99015330..99015341, -
1.31e-86FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_4c63b74c7d46234b4003b4b0967806acp1@ENSMUST00000103733
1.31e-86FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_4c63b74c7d46234b4003b4b0967806acp@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_4c63b74c7d46234b4003b4b0967806acp3@Tnfrsf25
2.98e-86FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_3f4983a27d0cd5fcd1e795fa14eb58b6p@chr10:14611822..14611844, -
2.98e-86FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_3f4983a27d0cd5fcd1e795fa14eb58b6p@chr10:14611822..14611844, -
3.57e-86FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_e903fde8d637e2fed2beb45594018b03p@chr4:90205082..90205093, +
3.57e-86FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_e903fde8d637e2fed2beb45594018b03p@chr4:90205082..90205093, +
9.89e-85FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_accc5acf9e256fbdbcfc0de62658053ap@chr16:57162957..57162973, +
9.89e-85FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_accc5acf9e256fbdbcfc0de62658053ap@chr16:57162957..57162973, +
1.01e-83FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_7eda97d7261c0dd6348c00e60fc23ef0p@chr2:87053288..87053295, -
1.01e-83FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_7eda97d7261c0dd6348c00e60fc23ef0p@chr2:87053288..87053295, -
1.1e-83FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_3bda5ff4f3f3dab2ebc5bc483af44aa8p@chr6:128299606..128299618, +
1.1e-83FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_3bda5ff4f3f3dab2ebc5bc483af44aa8p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_3bda5ff4f3f3dab2ebc5bc483af44aa8p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_3bda5ff4f3f3dab2ebc5bc483af44aa8p@chr6:128299606..128299618, +
1.69e-83FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_9e066ac790748aa4b66062bf2bf24ad2p@chr5:35780579..35780585, +
1.69e-83FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_9e066ac790748aa4b66062bf2bf24ad2p@chr5:35780579..35780585, +
1.02e-82FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_9dc8fa700d3ffb19202916f7fb706552p@chr5:35859218..35859252, -
1.02e-82FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_9dc8fa700d3ffb19202916f7fb706552p@chr5:35859218..35859252, -
1.33e-82FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_ab86fdb7551abb3199302f98ca8a46bfp@chr12:49375076..49375089, -
1.33e-82FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_ab86fdb7551abb3199302f98ca8a46bfp@chr12:49375076..49375089, -
3.02e-82FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_c2d56c1c9a3aed6621061e322458a03ap@chr10:9060907..9060927, -
3.02e-82FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_c2d56c1c9a3aed6621061e322458a03ap@chr10:9060907..9060927, -
4.05e-82FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_2d7e593e3e23754ced0ec06f5c465f45p@chr12:10561626..10561641, -
4.05e-82FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_2d7e593e3e23754ced0ec06f5c465f45p@chr12:10561626..10561641, -
4.31e-82FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_d371eb928bc6724893baf6b43e0a2ddfp@chr7:150178764..150178778, -
4.31e-82FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_d371eb928bc6724893baf6b43e0a2ddfp@chr7:150178764..150178778, -
5.81e-82FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_916800104ef13cb25939fb28fa7d2d32p@chr2:182038499..182038509, +
5.81e-82FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_916800104ef13cb25939fb28fa7d2d32p@chr2:182038499..182038509, +
1.02e-81FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_52b22777d4102f5210277f516c2d56acp@chr4:4271366..4271377, -
1.02e-81FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_52b22777d4102f5210277f516c2d56acp@chr4:4271366..4271377, -
8.22e-81FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_f44747e2b63de2f64a1068da19c05b6cp10@ATM
8.22e-81FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_f44747e2b63de2f64a1068da19c05b6cp10@ATM
2.22e-80FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_a1f51d72ab1cd0d8149cc028f4d52414p@chr12:12867774..12867787, -
2.22e-80FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_a1f51d72ab1cd0d8149cc028f4d52414p@chr12:12867774..12867787, -
8.6e-79FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_6be7ef412b84b056af221c0327a12114p@chr5:67571114..67571129, -
8.6e-79FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_6be7ef412b84b056af221c0327a12114p@chr5:67571114..67571129, -
2.3e-78FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_191bca638bb77e2afa6b4f783f80920bp1@ENSMUST00000103714
2.3e-78FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_191bca638bb77e2afa6b4f783f80920bp1@ENSMUST00000103714
2.3e-78FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_191bca638bb77e2afa6b4f783f80920bp@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_191bca638bb77e2afa6b4f783f80920bp@chr12:74704873..74704900, +
2.3e-78FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_191bca638bb77e2afa6b4f783f80920bp@chr14:56207154..56207165, -
2.3e-78FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_191bca638bb77e2afa6b4f783f80920bp@chr14:56207154..56207165, -
2.3e-78FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_191bca638bb77e2afa6b4f783f80920bp@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_191bca638bb77e2afa6b4f783f80920bp@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_191bca638bb77e2afa6b4f783f80920bp@chr8:84082784..84082795, +
2.3e-78FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_191bca638bb77e2afa6b4f783f80920bp@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_191bca638bb77e2afa6b4f783f80920bp@chr12:74704873..74704900, +
2.3e-78FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_191bca638bb77e2afa6b4f783f80920bp@chr8:84082784..84082795, +
2.56e-78FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_d239ef9f41dfbc3f4a005088e23d8c9fp@chr6:143228788..143228799, -
2.56e-78FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_d239ef9f41dfbc3f4a005088e23d8c9fp@chr6:143228788..143228799, -
2.82e-78FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_58709b213c9c424fdf7d427c0e50cd0dp@chr5:123440767..123440778, +
2.82e-78FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_58709b213c9c424fdf7d427c0e50cd0dp@chr4:32422919..32422935, +
2.82e-78FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_58709b213c9c424fdf7d427c0e50cd0dp@chr14:54838649..54838660, +
2.82e-78FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_58709b213c9c424fdf7d427c0e50cd0dp@chr14:54838649..54838660, +
2.82e-78FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_58709b213c9c424fdf7d427c0e50cd0dp@chr4:32422919..32422935, +
2.82e-78FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_58709b213c9c424fdf7d427c0e50cd0dp@chr5:123440767..123440778, +
3.46e-78FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_31c4239e4524b08eb200e9fb95c91647p@chr15:27786221..27786240, -
3.46e-78FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_31c4239e4524b08eb200e9fb95c91647p@chr15:27786221..27786240, -
4.25e-78FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_cc93b374754a3bdae7332b257ece20cap@chr6:99215016..99215036, +
4.25e-78FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_cc93b374754a3bdae7332b257ece20cap@chr3:103672068..103672090, -
4.25e-78FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_cc93b374754a3bdae7332b257ece20cap@chr6:99215016..99215036, +
4.25e-78FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_cc93b374754a3bdae7332b257ece20cap@chr3:103672068..103672090, -
5.22e-78FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_f62f9a1d487f04614522e1a725106cadp@chr6:48634453..48634468, -
5.22e-78FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_f62f9a1d487f04614522e1a725106cadp@chr6:48634453..48634468, -
6.45e-78FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_e95e9802701c477378a037edc0865b99p@chr7:36816941..36816949, +
6.45e-78FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_e95e9802701c477378a037edc0865b99p@chr7:36816941..36816949, +
7.86e-78FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_f0afe4b8a4cd2886263b4a206681912fp5@uc007vxz.1
7.86e-78FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_f0afe4b8a4cd2886263b4a206681912fp5@uc007vxz.1

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