CL:0002599: Difference between revisions
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|has_quality= | |has_quality= | ||
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|part_of= | |part_of=UBERON:0001043 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:04, 27 June 2012
| Name: | smooth muscle cell of the esophagus |
|---|---|
| Namespace: | cell |
| Definition: | "A smooth muscle cell of the esophagus." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-06T05:48:17Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000192(smooth muscle cell) |
|---|---|
| part_of: | UBERON:0001043(esophagus) |
Children
| derives from: | FF:0000182 (human esophageal smooth muscle cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11508-119G5 (Smooth Muscle Cells - Esophageal, donor1)
- 11588-120G4 (Smooth Muscle Cells - Esophageal, donor2)
- 11669-122G4
Mouse (Mus musculus)
- 11508-119G5 (Smooth Muscle Cells - Esophageal, donor1)
- 11588-120G4 (Smooth Muscle Cells - Esophageal, donor2)
- 11669-122G4
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002599 (smooth muscle cell of the esophagus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:46193488..46193497,+#_fb9a2f80eaa5046cd30e3a6726108033 | p@chr7:46193488..46193497, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:46193488..46193497,+#_fb9a2f80eaa5046cd30e3a6726108033 | p@chr7:46193488..46193497, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr8:77108050..77108053,-#_101dddbe1f6b379beedaaa40f54debfc | p@chr8:77108050..77108053, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr8:77108050..77108053,-#_101dddbe1f6b379beedaaa40f54debfc | p@chr8:77108050..77108053, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr7:47622108..47622117,-#_7b8bdc9d49bba2abe471b37baaff817b | p33@TNS3 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr7:47622108..47622117,-#_7b8bdc9d49bba2abe471b37baaff817b | p33@TNS3 |
| 7.48e-30 | FFCP PHASE1:Hg19::chr11:130298611..130298627,-#_ef51e71f35ac61edca96e814c7558b13 | p4@ADAMTS8 |
| 7.48e-30 | FFCP PHASE2:Hg19::chr11:130298611..130298627,-#_ef51e71f35ac61edca96e814c7558b13 | p4@ADAMTS8 |
| 1.33e-29 | FFCP PHASE2:Hg19::chr4:148885940..148885946,+#_9b7f31092d22a3b528854a70ca3c4b38 | p@chr4:148885940..148885946, + |
| 1.33e-29 | FFCP PHASE1:Hg19::chr4:148885940..148885946,+#_9b7f31092d22a3b528854a70ca3c4b38 | p@chr4:148885940..148885946, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr10:92178805..92178827,+#_d44fe52dd7de011aa7129740b4533729 | p@chr10:92178805..92178827, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr10:92178805..92178827,+#_d44fe52dd7de011aa7129740b4533729 | p@chr10:92178805..92178827, + |
| 9.79e-26 | FFCP PHASE2:Hg19::chrX:104568883..104568906,+#_9d4d013bd94cf8d6bf2c1db0398ef0d6 | p@chrX:104568883..104568906, + |
| 9.79e-26 | FFCP PHASE1:Hg19::chrX:104568883..104568906,+#_9d4d013bd94cf8d6bf2c1db0398ef0d6 | p@chrX:104568883..104568906, + |
| 3.28e-23 | FFCP PHASE1:Hg19::chr12:57000413..57000417,-#_f48b5d1f28d43cfc0122b3f3b0498f62 | p22@BAZ2A |
| 3.28e-23 | FFCP PHASE2:Hg19::chr12:57000413..57000417,-#_f48b5d1f28d43cfc0122b3f3b0498f62 | p22@BAZ2A |
| 1.88e-21 | FFCP PHASE2:Hg19::chr1:204276775..204276789,-#_e1c6247ef1d8175352af3389c144e020 | p@chr1:204276775..204276789, - |
| 1.88e-21 | FFCP PHASE1:Hg19::chr1:204276775..204276789,-#_e1c6247ef1d8175352af3389c144e020 | p@chr1:204276775..204276789, - |
| 2.3e-21 | FFCP PHASE2:Hg19::chr6:134210625..134210636,+#_f503c77e3a8ac26068453963c02bfb62 | p6@TCF21 |
| 2.3e-21 | FFCP PHASE1:Hg19::chr6:134210625..134210636,+#_f503c77e3a8ac26068453963c02bfb62 | p6@TCF21 |
| 2.82e-21 | FFCP PHASE2:Hg19::chr3:170150640..170150647,+#_72978ab143d86b4782e735c0ea18b359 | p@chr3:170150640..170150647, + |
| 2.82e-21 | FFCP PHASE1:Hg19::chr3:170150640..170150647,+#_72978ab143d86b4782e735c0ea18b359 | p@chr3:170150640..170150647, + |
| 6.31e-21 | FFCP PHASE2:Hg19::chr1:54791102..54791151,-#_0aa3f75c97f565c3f2092e98737ab1cb | p6@SSBP3 |
| 6.31e-21 | FFCP PHASE1:Hg19::chr1:54791102..54791151,-#_0aa3f75c97f565c3f2092e98737ab1cb | p6@SSBP3 |
| 1.08e-19 | FFCP PHASE2:Hg19::chr19:34787674..34787690,-#_cdeb8e080ecd5c45bb088d5bc9d745d5 | p1@ENST00000431093 |
| 1.08e-19 | FFCP PHASE1:Hg19::chr19:34787674..34787690,-#_cdeb8e080ecd5c45bb088d5bc9d745d5 | p1@ENST00000431093 |
| 1.88e-19 | FFCP PHASE1:Hg19::chr15:80843472..80843480,+#_7c9ff540582b3e2cffb091c29d1f51d8 | p22@ARNT2 |
| 1.88e-19 | FFCP PHASE2:Hg19::chr15:80843472..80843480,+#_7c9ff540582b3e2cffb091c29d1f51d8 | p22@ARNT2 |
| 7.37e-18 | FFCP PHASE2:Hg19::chr5:149425247..149425250,+#_be372443757229b534d6c8de621908dc | p@chr5:149425247..149425250, + |
| 7.37e-18 | FFCP PHASE1:Hg19::chr5:149425247..149425250,+#_be372443757229b534d6c8de621908dc | p@chr5:149425247..149425250, + |
| 1.44e-17 | FFCP PHASE2:Hg19::chr3:177652390..177652395,+#_e6f4b5fc7a9c7eb02ffcc141d918e605 | p1@ENST00000450500 |
| 1.44e-17 | FFCP PHASE1:Hg19::chr3:177652390..177652395,+#_e6f4b5fc7a9c7eb02ffcc141d918e605 | p1@ENST00000450500 |
| 6.47e-17 | FFCP PHASE2:Hg19::chr19:45261267..45261280,+#_fb5ced29514e79866eccf89c13aa6e3b | p@chr19:45261267..45261280, + |
| 6.47e-17 | FFCP PHASE1:Hg19::chr19:45261267..45261280,+#_fb5ced29514e79866eccf89c13aa6e3b | p@chr19:45261267..45261280, + |
| 7.57e-17 | FFCP PHASE1:Hg19::chr15:35731807..35731812,+#_1e4901bee981d413596aedcf9d16f7d2 | p@chr15:35731807..35731812, + |
| 7.57e-17 | FFCP PHASE2:Hg19::chr15:35731807..35731812,+#_1e4901bee981d413596aedcf9d16f7d2 | p@chr15:35731807..35731812, + |
| 8.86e-17 | FFCP PHASE2:Hg19::chr18:77557932..77557943,+#_4d9c588a4a5f871a944c673dab00b6c9 | p@chr18:77557932..77557943, + |
| 8.86e-17 | FFCP PHASE1:Hg19::chr18:77557932..77557943,+#_4d9c588a4a5f871a944c673dab00b6c9 | p@chr18:77557932..77557943, + |
| 1.41e-16 | FFCP PHASE1:Hg19::chr16:30367267..30367278,+#_fe1cacc5c4d54588c2c37d965fe63e53 | p@chr16:30367267..30367278, + |
| 1.41e-16 | FFCP PHASE2:Hg19::chr16:30367267..30367278,+#_fe1cacc5c4d54588c2c37d965fe63e53 | p@chr16:30367267..30367278, + |
| 9.99e-16 | FFCP PHASE2:Hg19::chr17:80037380..80037391,-#_bdfff332d7f65476e2e43f9ec4386fac | p6@BC065179 |
| 9.99e-16 | FFCP PHASE1:Hg19::chr17:80037380..80037391,-#_bdfff332d7f65476e2e43f9ec4386fac | p6@BC065179 |
| 1.54e-15 | FFCP PHASE2:Hg19::chr6:35688276..35688291,-#_c7b3288da405f81840040679b75224d3 | p@chr6:35688276..35688291, - |
| 1.54e-15 | FFCP PHASE1:Hg19::chr6:35688276..35688291,-#_c7b3288da405f81840040679b75224d3 | p@chr6:35688276..35688291, - |
| 1.54e-15 | FFCP PHASE1:Hg19::chr14:72169012..72169030,+#_c7b3288da405f81840040679b75224d3 | p20@SIPA1L1 |
| 1.54e-15 | FFCP PHASE2:Hg19::chr14:72169012..72169030,+#_c7b3288da405f81840040679b75224d3 | p20@SIPA1L1 |
| 2.06e-15 | FFCP PHASE1:Hg19::chr16:57880370..57880384,-#_638d53a60c2ec46ab2d2724b7f634692 | p8@KIFC3 |
| 2.06e-15 | FFCP PHASE2:Hg19::chr16:57880370..57880384,-#_638d53a60c2ec46ab2d2724b7f634692 | p8@KIFC3 |
| 7.13e-15 | FFCP PHASE2:Hg19::chr3:177623510..177623515,+#_f3fce2af0821784ec5bb532c336a0372 | p@chr3:177623510..177623515, + |
| 7.13e-15 | FFCP PHASE1:Hg19::chr3:177623510..177623515,+#_f3fce2af0821784ec5bb532c336a0372 | p@chr3:177623510..177623515, + |
| 4.53e-14 | FFCP PHASE1:Hg19::chr15:80800274..80800278,-#_01ace2d266d4a568c291effce5c9ae5c | p@chr15:80800274..80800278, - |
| 4.53e-14 | FFCP PHASE2:Hg19::chr15:80800274..80800278,-#_01ace2d266d4a568c291effce5c9ae5c | p@chr15:80800274..80800278, - |
| 7.55e-14 | FFCP PHASE1:Hg19::chr14:92343971..92343997,-#_fc26621f4ef509dcf86ca05bc69b50f0 | p@chr14:92343971..92343997, - |
| 7.55e-14 | FFCP PHASE2:Hg19::chr14:92343971..92343997,-#_fc26621f4ef509dcf86ca05bc69b50f0 | p@chr14:92343971..92343997, - |
| 2.62e-13 | FFCP PHASE1:Hg19::chr11:2950810..2950823,-#_dfc43e2ea16f57bb7d544a2fe9d61db6 | p4@PHLDA2 |
| 2.62e-13 | FFCP PHASE2:Hg19::chr11:2950810..2950823,-#_dfc43e2ea16f57bb7d544a2fe9d61db6 | p4@PHLDA2 |
| 9.92e-13 | FFCP PHASE2:Hg19::chr1:9970373..9970382,-#_3ee9b04bb530f6906e3f42a44b81985e | p5@CTNNBIP1 |
| 9.92e-13 | FFCP PHASE1:Hg19::chr1:9970373..9970382,-#_3ee9b04bb530f6906e3f42a44b81985e | p5@CTNNBIP1 |
| 1.4e-12 | FFCP PHASE2:Hg19::chr1:26907862..26907865,-#_2a29ddc373ed4b85c0b05ba40fb626c9 | p@chr1:26907862..26907865, - |
| 1.4e-12 | FFCP PHASE1:Hg19::chr1:26907862..26907865,-#_2a29ddc373ed4b85c0b05ba40fb626c9 | p@chr1:26907862..26907865, - |
| 5.05e-12 | FFCP PHASE2:Hg19::chr9:130829492..130829503,-#_d31ce0a9c407ee336774ee8f63a3d7fd | p4@NAIF1 |
| 5.05e-12 | FFCP PHASE1:Hg19::chr9:130829492..130829503,-#_d31ce0a9c407ee336774ee8f63a3d7fd | p4@NAIF1 |
| 7.76e-12 | FFCP PHASE2:Hg19::chr16:86612174..86612188,+#_b9f1b7e9bf228004a40dab2ad824020d | p4@FOXL1 |
| 7.76e-12 | FFCP PHASE1:Hg19::chr16:86612174..86612188,+#_b9f1b7e9bf228004a40dab2ad824020d | p4@FOXL1 |
| 8.64e-12 | FFCP PHASE2:Hg19::chr7:3234429..3234449,-#_de1cf05dded1d21924695c567b87a72a | p@chr7:3234429..3234449, - |
| 8.64e-12 | FFCP PHASE1:Hg19::chr7:3234429..3234449,-#_de1cf05dded1d21924695c567b87a72a | p@chr7:3234429..3234449, - |
| 1.07e-11 | FFCP PHASE2:Hg19::chr17:26890664..26890683,-#_550c6b67bffacf08aa9881e361d287c0 | p6@PIGS |
| 1.07e-11 | FFCP PHASE1:Hg19::chr17:26890664..26890683,-#_550c6b67bffacf08aa9881e361d287c0 | p6@PIGS |
| 1.31e-11 | FFCP PHASE2:Hg19::chr17:29335535..29335575,-#_22288cd79015607d1c1a42600d984517 | p@chr17:29335535..29335575, - |
| 1.31e-11 | FFCP PHASE1:Hg19::chr17:29335535..29335575,-#_22288cd79015607d1c1a42600d984517 | p@chr17:29335535..29335575, - |
| 2.18e-11 | FFCP PHASE1:Hg19::chr16:28841378..28841383,+#_34b7846990d3620ea17a5e5b759dd739 | p@chr16:28841378..28841383, + |
| 2.18e-11 | FFCP PHASE2:Hg19::chr16:28841378..28841383,+#_34b7846990d3620ea17a5e5b759dd739 | p@chr16:28841378..28841383, + |
| 2.79e-11 | FFCP PHASE1:Hg19::chr11:130298500..130298509,-#_60aa24946ee0556691743b7317402b28 | p1@ADAMTS8 |
| 2.79e-11 | FFCP PHASE2:Hg19::chr11:130298500..130298509,-#_60aa24946ee0556691743b7317402b28 | p1@ADAMTS8 |
| 2.96e-11 | FFCP PHASE2:Hg19::chr21:47539028..47539037,+#_5b1a091f2d3332c8e7ad87c30ae1d2a9 | p@chr21:47539028..47539037, + |
| 2.96e-11 | FFCP PHASE1:Hg19::chr21:47539028..47539037,+#_5b1a091f2d3332c8e7ad87c30ae1d2a9 | p@chr21:47539028..47539037, + |
| 6.14e-11 | FFCP PHASE2:Hg19::chr1:10477039..10477066,+#_53710c2ad1067680675241a92960b9c3 | p@chr1:10477039..10477066, + |
| 6.14e-11 | FFCP PHASE1:Hg19::chr1:10477039..10477066,+#_53710c2ad1067680675241a92960b9c3 | p@chr1:10477039..10477066, + |
| 6.14e-11 | FFCP PHASE2:Hg19::chr17:67757945..67757967,-#_53710c2ad1067680675241a92960b9c3 | p@chr17:67757945..67757967, - |
| 6.14e-11 | FFCP PHASE1:Hg19::chr17:67757945..67757967,-#_53710c2ad1067680675241a92960b9c3 | p@chr17:67757945..67757967, - |
| 1.19e-10 | FFCP PHASE2:Hg19::chr1:1567487..1567492,+#_f6dd4b12ef6edc6335432da84161a0b5 | p6@MMP23B |
| 1.19e-10 | FFCP PHASE1:Hg19::chr1:1567487..1567492,+#_f6dd4b12ef6edc6335432da84161a0b5 | p6@MMP23B |
| 1.43e-10 | FFCP PHASE1:Hg19::chr13:114630408..114630430,+#_eaeaeb50e9018efae538ad307de5dadd | p@chr13:114630408..114630430, + |
| 1.43e-10 | FFCP PHASE2:Hg19::chr13:114630408..114630430,+#_eaeaeb50e9018efae538ad307de5dadd | p@chr13:114630408..114630430, + |
| 2.28e-10 | FFCP PHASE2:Hg19::chr4:42399551..42399563,+#_84523537e1db99ded43f0c526d7d7778 | p2@SHISA3 |
| 2.28e-10 | FFCP PHASE1:Hg19::chr4:42399551..42399563,+#_84523537e1db99ded43f0c526d7d7778 | p2@SHISA3 |
| 2.84e-10 | FFCP PHASE2:Hg19::chr18:77557973..77557984,+#_8313b15291bf6abde1ac9aa6db24f922 | p@chr18:77557973..77557984, + |
| 2.84e-10 | FFCP PHASE1:Hg19::chr18:77557973..77557984,+#_8313b15291bf6abde1ac9aa6db24f922 | p@chr18:77557973..77557984, + |
| 3.01e-10 | FFCP PHASE2:Hg19::chr19:5212096..5212107,-#_5bb404ac398bd8f3d91ed1784d14204c | p@chr19:5212096..5212107, - |
| 3.01e-10 | FFCP PHASE1:Hg19::chr19:5212096..5212107,-#_5bb404ac398bd8f3d91ed1784d14204c | p@chr19:5212096..5212107, - |
| 3.71e-10 | FFCP PHASE1:Hg19::chr11:47279167..47279178,+#_742073819e2e4e2cbe055374fac80d22 | p10@NR1H3 |
| 3.71e-10 | FFCP PHASE2:Hg19::chr11:47279167..47279178,+#_742073819e2e4e2cbe055374fac80d22 | p10@NR1H3 |
| 5.79e-10 | FFCP PHASE2:Hg19::chr5:149682252..149682265,-#_9533f4a2f0f98e33acef76824da9c501 | p6@ARSI |
| 5.79e-10 | FFCP PHASE1:Hg19::chr5:149682252..149682265,-#_9533f4a2f0f98e33acef76824da9c501 | p6@ARSI |
| 6.33e-10 | FFCP PHASE2:Hg19::chr8:38008450..38008459,-#_4a73d32d5dc486376c7f1ab9e2654c99 | p4@STAR |
| 6.33e-10 | FFCP PHASE1:Hg19::chr8:38008450..38008459,-#_4a73d32d5dc486376c7f1ab9e2654c99 | p4@STAR |
| 7.55e-10 | FFCP PHASE2:Hg19::chr22:25091967..25092006,-#_3aa6ffca6fbfd5cdd389af260d7100b2 | p@chr22:25091967..25092006, - |
| 7.55e-10 | FFCP PHASE1:Hg19::chr22:25091967..25092006,-#_3aa6ffca6fbfd5cdd389af260d7100b2 | p@chr22:25091967..25092006, - |
| 7.98e-10 | FFCP PHASE1:Hg19::chr14:92414271..92414293,-#_80d79100add6090602bb114d900f2f7a | p21@FBLN5 |
| 7.98e-10 | FFCP PHASE2:Hg19::chr14:92414271..92414293,-#_80d79100add6090602bb114d900f2f7a | p21@FBLN5 |
