CL:1000415: Difference between revisions

Revision as of 13:05, 27 June 2012

Name:

epithelial cell of gall bladder

Namespace:

cell

Definition:

"An epithelial cell that is part of the gallbladder." [GOC:tfm]

Xrefs:

Expandlinks:

Ontology association Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies. link to ontology dataset data

Parents

is_a:	CL:0000066(epithelial cell),CL:0002371(somatic cell)
part_of:	UBERON:0002110(gallbladder)

Children

is a:	FF:10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB),FF:10470-106I2 (gall bladder carcinoma cell line:TGBC14TKB)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
10470-106I2 (gall bladder carcinoma cell line:TGBC14TKB)

Mouse (Mus musculus)

10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
10470-106I2 (gall bladder carcinoma cell line:TGBC14TKB)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000415 (epithelial cell of gall bladder), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
1.55e-98	FFCP PHASE2:Hg19::chr4:189258158..189258183,-	p@chr4:189258158..189258183, -
1.55e-98	FFCP PHASE1:Hg19::chr4:117626532..117626537,+	p@chr4:117626532..117626537, +
1.55e-98	FFCP PHASE2:Hg19::chr20:4100562..4100570,+	p4@BC027448
1.55e-98	FFCP PHASE2:Hg19::chr14:38091563..38091607,+	p@chr14:38091563..38091607, +
1.55e-98	FFCP PHASE2:Hg19::chr10:103952998..103953003,-	p@chr10:103952998..103953003, -
1.55e-98	FFCP PHASE1:Hg19::chr3:145127555..145127558,+	p@chr3:145127555..145127558, +
1.55e-98	FFCP PHASE1:Hg19::chr9:95737958..95737978,+	p@chr9:95737958..95737978, +
1.55e-98	FFCP PHASE1:Hg19::chr18:2351233..2351242,+	p@chr18:2351233..2351242, +
1.55e-98	FFCP PHASE2:Hg19::chr20:4100596..4100603,+	p5@BC027448
1.55e-98	FFCP PHASE2:Hg19::chr4:117626532..117626537,+	p@chr4:117626532..117626537, +
1.55e-98	FFCP PHASE2:Hg19::chr3:145127555..145127558,+	p@chr3:145127555..145127558, +
1.55e-98	FFCP PHASE1:Hg19::chr2:42157172..42157179,-	p@chr2:42157172..42157179, -
1.55e-98	FFCP PHASE2:Hg19::chr9:95737958..95737978,+	p@chr9:95737958..95737978, +
1.55e-98	FFCP PHASE2:Hg19::chr18:2351233..2351242,+	p@chr18:2351233..2351242, +
1.55e-98	FFCP PHASE1:Hg19::chr14:38091563..38091607,+	p@chr14:38091563..38091607, +
1.55e-98	FFCP PHASE1:Hg19::chr2:42157397..42157411,-	p@chr2:42157397..42157411, -
1.55e-98	FFCP PHASE1:Hg19::chr4:189258158..189258183,-	p@chr4:189258158..189258183, -
1.55e-98	FFCP PHASE1:Hg19::chr5:25649889..25649911,-	p@chr5:25649889..25649911, -
1.55e-98	FFCP PHASE1:Hg19::chr20:4100562..4100570,+	p4@BC027448
1.55e-98	FFCP PHASE2:Hg19::chr2:42157172..42157179,-	p@chr2:42157172..42157179, -
1.55e-98	FFCP PHASE1:Hg19::chr10:103952998..103953003,-	p@chr10:103952998..103953003, -
1.55e-98	FFCP PHASE2:Hg19::chr5:25649889..25649911,-	p@chr5:25649889..25649911, -
1.55e-98	FFCP PHASE1:Hg19::chr20:4100596..4100603,+	p5@BC027448
1.55e-98	FFCP PHASE2:Hg19::chr2:42157397..42157411,-	p@chr2:42157397..42157411, -
2.74e-50	FFCP PHASE1:Hg19::chr9:95737369..95737393,+	p18@FGD3
2.74e-50	FFCP PHASE1:Hg19::chr18:2351165..2351175,+	p@chr18:2351165..2351175, +
2.74e-50	FFCP PHASE1:Hg19::chr4:190861941..190861951,+	p3@FRG1
2.74e-50	FFCP PHASE1:Hg19::chr11:86501763..86501768,+	p33@PRSS23
2.74e-50	FFCP PHASE1:Hg19::chr19:28401158..28401162,-	p@chr19:28401158..28401162, -
2.74e-50	FFCP PHASE1:Hg19::chr12:113448406..113448411,+	p14@OAS2
2.74e-50	FFCP PHASE2:Hg19::chr9:95737369..95737393,+	p18@FGD3
2.74e-50	FFCP PHASE1:Hg19::chr18:35871337..35871346,+	p@chr18:35871337..35871346, +
2.74e-50	FFCP PHASE2:Hg19::chr7:114026271..114026287,-	p@chr7:114026271..114026287, -
2.74e-50	FFCP PHASE1:Hg19::chr6:13191432..13191436,-	p@chr6:13191432..13191436, -
2.74e-50	FFCP PHASE2:Hg19::chrX:29431271..29431280,+	p@chrX:29431271..29431280, +
2.74e-50	FFCP PHASE2:Hg19::chr17:67559529..67559532,+	p@chr17:67559529..67559532, +
2.74e-50	FFCP PHASE1:Hg19::chr10:124050589..124050596,+	p15@BTBD16
2.74e-50	FFCP PHASE2:Hg19::chr18:2351165..2351175,+	p@chr18:2351165..2351175, +
2.74e-50	FFCP PHASE2:Hg19::chr4:190861941..190861951,+	p3@FRG1
2.74e-50	FFCP PHASE2:Hg19::chr19:28401158..28401162,-	p@chr19:28401158..28401162, -
2.74e-50	FFCP PHASE2:Hg19::chr11:86501763..86501768,+	p33@PRSS23
2.74e-50	FFCP PHASE2:Hg19::chr18:35871337..35871346,+	p@chr18:35871337..35871346, +
2.74e-50	FFCP PHASE1:Hg19::chr5:147644551..147644576,+	p@chr5:147644551..147644576, +
2.74e-50	FFCP PHASE2:Hg19::chr12:113448406..113448411,+	p14@OAS2
2.74e-50	FFCP PHASE2:Hg19::chr10:124050589..124050596,+	p15@BTBD16
2.74e-50	FFCP PHASE2:Hg19::chr6:13191432..13191436,-	p@chr6:13191432..13191436, -
2.74e-50	FFCP PHASE1:Hg19::chr21:28226981..28227000,+	p@chr21:28226981..28227000, +
2.74e-50	FFCP PHASE2:Hg19::chr5:147644551..147644576,+	p@chr5:147644551..147644576, +
2.74e-50	FFCP PHASE1:Hg19::chr5:147645292..147645302,+	p@chr5:147645292..147645302, +
2.74e-50	FFCP PHASE1:Hg19::chr7:114026271..114026287,-	p@chr7:114026271..114026287, -
2.74e-50	FFCP PHASE1:Hg19::chrX:29431271..29431280,+	p@chrX:29431271..29431280, +
2.74e-50	FFCP PHASE1:Hg19::chr17:67559529..67559532,+	p@chr17:67559529..67559532, +
2.74e-50	FFCP PHASE2:Hg19::chr5:147645292..147645302,+	p@chr5:147645292..147645302, +
2.74e-50	FFCP PHASE2:Hg19::chr21:28226981..28227000,+	p@chr21:28226981..28227000, +
4.52e-50	FFCP PHASE1:Hg19::chr14:47289644..47289662,-	p@chr14:47289644..47289662, -
4.52e-50	FFCP PHASE1:Hg19::chr2:120974061..120974068,-	p3@ENST00000455707
4.52e-50	FFCP PHASE1:Hg19::chr6:66497726..66497737,-	p@chr6:66497726..66497737, -
4.52e-50	FFCP PHASE2:Hg19::chr12:127102703..127102711,-	p@chr12:127102703..127102711, -
4.52e-50	FFCP PHASE1:Hg19::chr4:175184241..175184250,-	p14@FBXO8
4.52e-50	FFCP PHASE1:Hg19::chr18:61420303..61420306,+	p17@SERPINB7
4.52e-50	FFCP PHASE1:Hg19::chr4:59982412..59982425,+	p@chr4:59982412..59982425, +
4.52e-50	FFCP PHASE2:Hg19::chr19:36757642..36757645,+	p@chr19:36757642..36757645, +
4.52e-50	FFCP PHASE2:Hg19::chr2:120974061..120974068,-	p3@ENST00000455707
4.52e-50	FFCP PHASE1:Hg19::chr5:37852067..37852074,-	p@chr5:37852067..37852074, -
4.52e-50	FFCP PHASE1:Hg19::chr16:34378161..34378168,+	p@chr16:34378161..34378168, +
4.52e-50	FFCP PHASE2:Hg19::chr14:47289644..47289662,-	p@chr14:47289644..47289662, -
4.52e-50	FFCP PHASE2:Hg19::chr6:66497726..66497737,-	p@chr6:66497726..66497737, -
4.52e-50	FFCP PHASE1:Hg19::chr4:175184051..175184061,-	p18@FBXO8
4.52e-50	FFCP PHASE2:Hg19::chr4:175184241..175184250,-	p14@FBXO8
4.52e-50	FFCP PHASE1:Hg19::chr17:68643476..68643477,+	p@chr17:68643476..68643477, +
4.52e-50	FFCP PHASE1:Hg19::chr3:106851639..106851650,-	p@chr3:106851639..106851650, -
4.52e-50	FFCP PHASE2:Hg19::chr18:61420303..61420306,+	p17@SERPINB7
4.52e-50	FFCP PHASE2:Hg19::chr5:37852067..37852074,-	p@chr5:37852067..37852074, -
4.52e-50	FFCP PHASE2:Hg19::chr4:59982412..59982425,+	p@chr4:59982412..59982425, +
4.52e-50	FFCP PHASE2:Hg19::chr16:34378161..34378168,+	p@chr16:34378161..34378168, +
4.52e-50	FFCP PHASE2:Hg19::chr3:106851639..106851650,-	p@chr3:106851639..106851650, -
4.52e-50	FFCP PHASE1:Hg19::chr12:127102703..127102711,-	p@chr12:127102703..127102711, -
4.52e-50	FFCP PHASE2:Hg19::chr4:175184051..175184061,-	p18@FBXO8
4.52e-50	FFCP PHASE2:Hg19::chr17:68643476..68643477,+	p@chr17:68643476..68643477, +
4.52e-50	FFCP PHASE1:Hg19::chr19:36757642..36757645,+	p@chr19:36757642..36757645, +
1.91e-44	FFCP PHASE1:Hg19::chr13:55820923..55820933,+	p@chr13:55820923..55820933, +
1.91e-44	FFCP PHASE2:Hg19::chr13:55820923..55820933,+	p@chr13:55820923..55820933, +
3.94e-37	FFCP PHASE1:Hg19::chr3:153807386..153807397,-	p@chr3:153807386..153807397, -
3.94e-37	FFCP PHASE2:Hg19::chr3:153807386..153807397,-	p@chr3:153807386..153807397, -
3.61e-34	FFCP PHASE1:Hg19::chr11:63331619..63331629,-	p7@AK025029
3.61e-34	FFCP PHASE1:Hg19::chr5:84867331..84867340,-	p@chr5:84867331..84867340, -
3.61e-34	FFCP PHASE2:Hg19::chr8:15939682..15939688,+	p@chr8:15939682..15939688, +
3.61e-34	FFCP PHASE2:Hg19::chr5:84867331..84867340,-	p@chr5:84867331..84867340, -
3.61e-34	FFCP PHASE2:Hg19::chr11:86501675..86501685,+	p29@PRSS23
3.61e-34	FFCP PHASE1:Hg19::chr4:146261581..146261590,-	p@chr4:146261581..146261590, -
3.61e-34	FFCP PHASE2:Hg19::chr11:63331619..63331629,-	p7@AK025029
3.61e-34	FFCP PHASE1:Hg19::chr4:146261630..146261638,-	p@chr4:146261630..146261638, -
3.61e-34	FFCP PHASE1:Hg19::chr8:15939682..15939688,+	p@chr8:15939682..15939688, +
3.61e-34	FFCP PHASE1:Hg19::chr10:73818867..73818877,-	p@chr10:73818867..73818877, -
3.61e-34	FFCP PHASE2:Hg19::chr4:146261581..146261590,-	p@chr4:146261581..146261590, -
3.61e-34	FFCP PHASE1:Hg19::chr11:86501675..86501685,+	p29@PRSS23
3.61e-34	FFCP PHASE2:Hg19::chr4:146261630..146261638,-	p@chr4:146261630..146261638, -
3.61e-34	FFCP PHASE2:Hg19::chr10:73818867..73818877,-	p@chr10:73818867..73818877, -
5.04e-34	FFCP PHASE1:Hg19::chr5:33297946..33297962,-	p1@ENST00000510327
5.04e-34	FFCP PHASE1:Hg19::chr7:144570766..144570771,+	p@chr7:144570766..144570771, +

Showing 1 to 100 of 100 entries

@@ Line 18: / Line 18: @@
 |has_quality=
 |located_in=
-|part_of=
+|part_of=UBERON:0002110
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
 |is_obsolete=
 |preceded_by=
 }}

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CL:1000415: Difference between revisions

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Revision as of 13:05, 27 June 2012

Ontology Tree: Loaded from BioPortal

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