CL:1000449: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 18: | Line 18: | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001285 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:05, 27 June 2012
| Name: | epithelial cell of nephron | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "An epithelial cell that is part of the nephron." [GOC:tfm] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002518(kidney epithelial cell) |
|---|---|
| part_of: | UBERON:0001285(nephron) |
Children
| is a: | CL:1000494 (nephron tubule epithelial cell),CL:1000612 (kidney corpuscule cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11517-119H5 (Renal Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11597-120H4 (Renal Epithelial Cells, donor2)
... further results Mouse (Mus musculus)
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11517-119H5 (Renal Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11597-120H4 (Renal Epithelial Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000449 (epithelial cell of nephron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.05e-87 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_21d2124265e362780e65dd28bede4d16 | p@chr2:693380..693398, + |
| 1.05e-87 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_21d2124265e362780e65dd28bede4d16 | p@chr2:693380..693398, + |
| 1.72e-83 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_02fccce59626be9b9b2c6645f5d4f63f | p4@MEGF11 |
| 1.72e-83 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_02fccce59626be9b9b2c6645f5d4f63f | p4@MEGF11 |
| 2.2e-74 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_6146b58c794828c15a96eef40f17e4f3 | p7@HOXA10 |
| 2.2e-74 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_6146b58c794828c15a96eef40f17e4f3 | p7@HOXA10 |
| 7.63e-66 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_7d35d2dbde82d397c65052cddacbc765 | p@chr1:1100457..1100470, + |
| 7.63e-66 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_7d35d2dbde82d397c65052cddacbc765 | p@chr1:1100457..1100470, + |
| 6.44e-62 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_6948ce0bb46c35da845a8f7cc7143bdf | p4@PAX2 |
| 6.44e-62 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_6948ce0bb46c35da845a8f7cc7143bdf | p4@PAX2 |
| 5.84e-60 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_dedfd13e650bfc46f836ab9c92aa560f | p@chr18:3456189..3456200, + |
| 5.84e-60 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_dedfd13e650bfc46f836ab9c92aa560f | p@chr18:3456189..3456200, + |
| 6.18e-60 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_7c2df668fef5bc0ff652ac0871b3339b | p3@PAX2 |
| 6.18e-60 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_7c2df668fef5bc0ff652ac0871b3339b | p3@PAX2 |
| 4.45e-59 | FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_862fd14119f0e2fb30b4ca95bd6f30c3 | p6@LRRN4 |
| 4.45e-59 | FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_862fd14119f0e2fb30b4ca95bd6f30c3 | p6@LRRN4 |
| 3.49e-58 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_423b82c67640fdd46304b8ab9281608c | p@chr5:74244100..74244117, + |
| 3.49e-58 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_423b82c67640fdd46304b8ab9281608c | p@chr5:74244100..74244117, + |
| 3.91e-56 | FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_16d6b4e7014cbbbf1400b4a73b2398ad | p2@AB527789 |
| 3.91e-56 | FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_16d6b4e7014cbbbf1400b4a73b2398ad | p2@AB527789 |
| 3.83e-55 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_c35a44731a78a0737ec88ce7e03955de | p@chr16:86604624..86604648, + |
| 3.83e-55 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_c35a44731a78a0737ec88ce7e03955de | p@chr16:86604624..86604648, + |
| 3.51e-54 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_2dac940c2376bd4d5b3bec487403b70a | p@chr16:86768403..86768437, + |
| 3.51e-54 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_2dac940c2376bd4d5b3bec487403b70a | p@chr16:86768403..86768437, + |
| 6.09e-53 | FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_06b5d8ef900eb4af69dd4e48cf2c4560 | p2@CLDN6 |
| 6.09e-53 | FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_06b5d8ef900eb4af69dd4e48cf2c4560 | p2@CLDN6 |
| 2.79e-52 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_bf82b584c9edf3bedfee06960b931eed | p1@ENST00000418041, p1@ENST00000443104 |
| 2.79e-52 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_bf82b584c9edf3bedfee06960b931eed | p1@ENST00000418041, p1@ENST00000443104 |
| 1.61e-50 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_676a5c3e1ccf0e6894a968d68cd88725 | p@chr7:7606139..7606151, - |
| 1.61e-50 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_676a5c3e1ccf0e6894a968d68cd88725 | p@chr7:7606139..7606151, - |
| 1.96e-50 | FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_036b4dcb062cdcde23f7642c3eff106a | p3@HNF1B |
| 1.96e-50 | FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_036b4dcb062cdcde23f7642c3eff106a | p3@HNF1B |
| 1.73e-49 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_7dbf1e3f5062bf3faf19bb6ea7aaa22c | p@chr7:140227349..140227360, - |
| 1.73e-49 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_7dbf1e3f5062bf3faf19bb6ea7aaa22c | p@chr7:140227349..140227360, - |
| 2.61e-49 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_d201995393f9983d383eec2c945e8c91 | p16@HOXA10 |
| 2.61e-49 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_d201995393f9983d383eec2c945e8c91 | p16@HOXA10 |
| 3.13e-49 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_597a4948ae08e2c1b6cead992e98bb8e | p2@B3GALT5 |
| 3.13e-49 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_597a4948ae08e2c1b6cead992e98bb8e | p2@B3GALT5 |
| 4.07e-49 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_30934a3d97786b428adcc35c2b345d0d | p4@AIF1L |
| 4.07e-49 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_30934a3d97786b428adcc35c2b345d0d | p4@AIF1L |
| 1.12e-47 | FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_66cd2bc70328f3102e932d108b81a278 | p@chr7:140227303..140227330, - |
| 1.12e-47 | FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_66cd2bc70328f3102e932d108b81a278 | p@chr7:140227303..140227330, - |
| 1.23e-44 | FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_6a20260613e126bc3070dc55bbf061f1 | p3@LRRN4 |
| 1.23e-44 | FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_6a20260613e126bc3070dc55bbf061f1 | p3@LRRN4 |
| 3.62e-44 | FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_62af534b5d359c901c0d1dfe85eb4717 | p@chr21:46826248..46826282, - |
| 3.62e-44 | FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_62af534b5d359c901c0d1dfe85eb4717 | p@chr21:46826248..46826282, - |
| 3.06e-43 | FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_44b7ad1680199e30bf348330d38f91ba | p2@LRRN4 |
| 3.06e-43 | FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_44b7ad1680199e30bf348330d38f91ba | p2@LRRN4 |
| 1.81e-42 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_c9d2b32d8236418d883fc4c2515954ea | p@chr15:85403302..85403304, + |
| 1.81e-42 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_c9d2b32d8236418d883fc4c2515954ea | p@chr15:85403302..85403304, + |
| 1.82e-42 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_c95978b0f53ead40185d33ad6d36f772 | p@chr7:98453821..98453843, - |
| 1.82e-42 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_c95978b0f53ead40185d33ad6d36f772 | p@chr7:98453821..98453843, - |
| 2.77e-42 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_4255444723d044fdaa388aa0aa38a962 | p7@LRRN4 |
| 2.77e-42 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_4255444723d044fdaa388aa0aa38a962 | p7@LRRN4 |
| 7.5e-42 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_3613e3e1bcfb4d73c4670e1b09a99d44 | p2@PAX2 |
| 7.5e-42 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_3613e3e1bcfb4d73c4670e1b09a99d44 | p2@PAX2 |
| 3.59e-41 | FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_00b783b29967ca429790d4f68e4d6e61 | p16@TJP2 |
| 3.59e-41 | FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_00b783b29967ca429790d4f68e4d6e61 | p16@TJP2 |
| 9.39e-41 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_2d47762242437cece4c0192b35881dfb | p1@ENST00000413103 |
| 9.39e-41 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_2d47762242437cece4c0192b35881dfb | p1@ENST00000413103 |
| 1.7e-40 | FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_e397d69dc1b45bf8fe9c0132897ca1fa | p5@LRRN4 |
| 1.7e-40 | FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_e397d69dc1b45bf8fe9c0132897ca1fa | p5@LRRN4 |
| 2.9e-40 | FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_dc134a6e0669dc2c0bb4abd19bfbeeb1 | p2@PLA2G2F |
| 2.9e-40 | FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_dc134a6e0669dc2c0bb4abd19bfbeeb1 | p2@PLA2G2F |
| 8.58e-40 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_fbab7bebbec0dbc358e5081e8540b16b | p3@AIF1L |
| 8.58e-40 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_fbab7bebbec0dbc358e5081e8540b16b | p3@AIF1L |
| 1.21e-39 | FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_f2dbffc1eccd94a88ef4d7903aabb6fe | p6@GALNT14 |
| 1.21e-39 | FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_f2dbffc1eccd94a88ef4d7903aabb6fe | p6@GALNT14 |
| 3.08e-39 | FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_e4a45e7ad2bcabaeee3231df16c8956f | p4@AB527789 |
| 3.08e-39 | FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_e4a45e7ad2bcabaeee3231df16c8956f | p4@AB527789 |
| 7.42e-37 | FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_e988ee673f1736b22d4c24d13c1c07d4 | p4@DCDC2 |
| 7.42e-37 | FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_e988ee673f1736b22d4c24d13c1c07d4 | p4@DCDC2 |
| 1.29e-36 | FFCP PHASE2:Hg19::chr2:693362..693373,+#_45b3f20f3cc985874316a49883296efb | p@chr2:693362..693373, + |
| 1.29e-36 | FFCP PHASE1:Hg19::chr2:693362..693373,+#_45b3f20f3cc985874316a49883296efb | p@chr2:693362..693373, + |
| 1.36e-36 | FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_dfb5485a39d3db10a8b0ee8f255274e6 | p1@HOXD4 |
| 1.36e-36 | FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_dfb5485a39d3db10a8b0ee8f255274e6 | p1@HOXD4 |
| 6.21e-36 | FFCP PHASE2:Hg19::chr2:176982078..176982095,+#_68735ce16409451f8eb30e4ddbe62d85 | p@chr2:176982078..176982095, + |
| 6.21e-36 | FFCP PHASE1:Hg19::chr2:176982078..176982095,+#_68735ce16409451f8eb30e4ddbe62d85 | p@chr2:176982078..176982095, + |
| 2.64e-35 | FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_970973f079d155f1cedea67897f3cbca | p1@AB527789 |
| 2.64e-35 | FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_970973f079d155f1cedea67897f3cbca | p1@AB527789 |
| 3.85e-35 | FFCP PHASE2:Hg19::chr2:108994466..108994485,+#_dde15ea1e8ca5be3e4082a1e088680ae | p3@SULT1C4 |
| 3.85e-35 | FFCP PHASE1:Hg19::chr2:108994466..108994485,+#_dde15ea1e8ca5be3e4082a1e088680ae | p3@SULT1C4 |
| 8.14e-35 | FFCP PHASE1:Hg19::chr18:43405633..43405645,+#_9a520a51f615421e427f6de233981253 | p4@SIGLEC15 |
| 8.14e-35 | FFCP PHASE2:Hg19::chr18:43405633..43405645,+#_9a520a51f615421e427f6de233981253 | p4@SIGLEC15 |
| 1.65e-34 | FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_9cb81e0c5f65dd07432306ca90ff1760 | p1@ENST00000444849 |
| 1.65e-34 | FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_9cb81e0c5f65dd07432306ca90ff1760 | p1@ENST00000444849 |
| 1.14e-33 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_270893abd0519f9e527c54b7201180b8 | p@chr17:171147..171161, + |
| 1.14e-33 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_270893abd0519f9e527c54b7201180b8 | p@chr17:171147..171161, + |
| 1.52e-33 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_1cd2eadbb7260b1a7534c38b384f0506 | p2@C14orf105 |
| 1.52e-33 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_1cd2eadbb7260b1a7534c38b384f0506 | p2@C14orf105 |
| 1.8e-33 | FFCP PHASE1:Hg19::chr2:31361543..31361564,-#_d51f1ca150839db43f735fe2308b31b7 | p5@GALNT14 |
| 1.8e-33 | FFCP PHASE2:Hg19::chr2:31361543..31361564,-#_d51f1ca150839db43f735fe2308b31b7 | p5@GALNT14 |
| 2.35e-33 | FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_c053d16d027753bad5ec14df07794f7a | p1@CLDN16 |
| 2.35e-33 | FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_c053d16d027753bad5ec14df07794f7a | p1@CLDN16 |
| 4.12e-33 | FFCP PHASE1:Hg19::chr17:36065029..36065045,-#_a7e242e90238b903008369a880d4400b | p@chr17:36065029..36065045, - |
| 4.12e-33 | FFCP PHASE2:Hg19::chr17:36065029..36065045,-#_a7e242e90238b903008369a880d4400b | p@chr17:36065029..36065045, - |
| 8.12e-33 | FFCP PHASE1:Hg19::chr17:35293950..35293973,-#_5b5c30618de4acf11d6b3b19059ea9cb | p1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387 |
| 8.12e-33 | FFCP PHASE2:Hg19::chr17:35293950..35293973,-#_5b5c30618de4acf11d6b3b19059ea9cb | p1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387 |
| 1.25e-32 | FFCP PHASE1:Hg19::chr22:30653574..30653606,-#_21e113fa78452e955e1a9cbddb2eed4e | p@chr22:30653574..30653606, - |
| 1.25e-32 | FFCP PHASE2:Hg19::chr22:30653574..30653606,-#_21e113fa78452e955e1a9cbddb2eed4e | p@chr22:30653574..30653606, - |
