UBERON:0008907: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0008907
|name=dermal bone
|namespace=
|def="Skeletal element that forms superficially in the organism, usually in association with the ectoderm." [VSAO...") |
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|part_of= | |part_of=UBERON:0010364 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Intramembranous bone that forms superficially in the organism.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Intramembranous bone that forms superficially in the organism.[TAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:44, 27 June 2012
| Name: | dermal bone | ||
|---|---|---|---|
| Definition: | "Skeletal element that forms superficially in the organism, usually in association with the ectoderm." [VSAO:0000130, VSAO:curator] | ||
| Xrefs: |
| ||
| Comments: | Note that other AOs are not yet in sync with this classification |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0007842(membrane bone) |
|---|---|
| part_of: | UBERON:0010364(dermal skeleton) |
Children
| is a: | UBERON:0002244 (premaxilla),UBERON:0002397 (maxilla),UBERON:0011628 (early premaxilla) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008907 (dermal bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_eba5667abfc4232fc077f7f10bb91841 | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_eba5667abfc4232fc077f7f10bb91841 | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_025c0b373f1b11329810c63b7b5e6fd7 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_025c0b373f1b11329810c63b7b5e6fd7 | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_025c0b373f1b11329810c63b7b5e6fd7 | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_025c0b373f1b11329810c63b7b5e6fd7 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_025c0b373f1b11329810c63b7b5e6fd7 | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_025c0b373f1b11329810c63b7b5e6fd7 | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_025c0b373f1b11329810c63b7b5e6fd7 | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_025c0b373f1b11329810c63b7b5e6fd7 | p13@C17orf67 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_caadc060c2ebe3156c6dd368a0397ae6 | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_caadc060c2ebe3156c6dd368a0397ae6 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_caadc060c2ebe3156c6dd368a0397ae6 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_caadc060c2ebe3156c6dd368a0397ae6 | p14@MAB21L2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_dc9bdabea3f0ba1c385ff61f88d38a78 | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_dc9bdabea3f0ba1c385ff61f88d38a78 | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_1051ae22fef6fd26be06e05ff7b62015 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_1051ae22fef6fd26be06e05ff7b62015 | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_1051ae22fef6fd26be06e05ff7b62015 | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_1051ae22fef6fd26be06e05ff7b62015 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_1051ae22fef6fd26be06e05ff7b62015 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_1051ae22fef6fd26be06e05ff7b62015 | p@chr8:57354278..57354286, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_ccde488b79c60c565bc7e17f1ec8ff5b | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_ccde488b79c60c565bc7e17f1ec8ff5b | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_a5af5a6170191ddd8bd610c6a382f0de | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_a5af5a6170191ddd8bd610c6a382f0de | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_a5af5a6170191ddd8bd610c6a382f0de | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_a5af5a6170191ddd8bd610c6a382f0de | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_a5af5a6170191ddd8bd610c6a382f0de | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_a5af5a6170191ddd8bd610c6a382f0de | p@chr5:75913767..75913778, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_19661a92a2f98c05bf1ba59f7594ef91 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_19661a92a2f98c05bf1ba59f7594ef91 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_19661a92a2f98c05bf1ba59f7594ef91 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_19661a92a2f98c05bf1ba59f7594ef91 | p23@FLT1 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_c1ff24583d6621fd497c3dcc48c509db | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_c1ff24583d6621fd497c3dcc48c509db | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_c1ff24583d6621fd497c3dcc48c509db | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_c1ff24583d6621fd497c3dcc48c509db | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_c1ff24583d6621fd497c3dcc48c509db | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_c1ff24583d6621fd497c3dcc48c509db | p@chr8:57353666..57353675, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_6ca2a22276e3a8e175b0f3d1c9b2953e | p12@FAM65C |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_6ca2a22276e3a8e175b0f3d1c9b2953e | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_6ca2a22276e3a8e175b0f3d1c9b2953e | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_6ca2a22276e3a8e175b0f3d1c9b2953e | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_6ca2a22276e3a8e175b0f3d1c9b2953e | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_6ca2a22276e3a8e175b0f3d1c9b2953e | p8@LHX8 |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_f2f9e16ca6588fce469fe79224335836 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_f2f9e16ca6588fce469fe79224335836 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_f2f9e16ca6588fce469fe79224335836 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_f2f9e16ca6588fce469fe79224335836 | p@chr5:75912831..75912842, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_bb9b9b7a57173c10a9b1c53a416daff0 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_bb9b9b7a57173c10a9b1c53a416daff0 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_bb9b9b7a57173c10a9b1c53a416daff0 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_bb9b9b7a57173c10a9b1c53a416daff0 | p@chr9:125165007..125165016, + |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_5f8c7fc73a8795c9e4f1d124b9c6a5dc | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_5f8c7fc73a8795c9e4f1d124b9c6a5dc | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_5f8c7fc73a8795c9e4f1d124b9c6a5dc | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_5f8c7fc73a8795c9e4f1d124b9c6a5dc | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_5f8c7fc73a8795c9e4f1d124b9c6a5dc | p5@PENK |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_5f8c7fc73a8795c9e4f1d124b9c6a5dc | p@chr10:15760985..15760992, - |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_377beb0d329fb9f2314f6d04e429821d | p9@SIX1 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_377beb0d329fb9f2314f6d04e429821d | p9@SIX1 |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_6ead36beb84d6fcf949519a558659b67 | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_6ead36beb84d6fcf949519a558659b67 | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_27fddfdb4966fba389a9599c99ecb676 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_27fddfdb4966fba389a9599c99ecb676 | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_27fddfdb4966fba389a9599c99ecb676 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_27fddfdb4966fba389a9599c99ecb676 | p@chr13:58291223..58291226, + |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_bce62bc1afbd55951e6a831bcd07c566 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_bce62bc1afbd55951e6a831bcd07c566 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_bce62bc1afbd55951e6a831bcd07c566 | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_bce62bc1afbd55951e6a831bcd07c566 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_bce62bc1afbd55951e6a831bcd07c566 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_bce62bc1afbd55951e6a831bcd07c566 | p4@PLAC1 |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_a42edbcfd66ee6a57b661cb8339990b8 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_a42edbcfd66ee6a57b661cb8339990b8 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_a42edbcfd66ee6a57b661cb8339990b8 | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_a42edbcfd66ee6a57b661cb8339990b8 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_a42edbcfd66ee6a57b661cb8339990b8 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_a42edbcfd66ee6a57b661cb8339990b8 | p@chr8:57354360..57354367, + |
| 9.99e-30 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_1e348c6e67df755c977387b592e6a439 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_1e348c6e67df755c977387b592e6a439 | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_1e348c6e67df755c977387b592e6a439 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_1e348c6e67df755c977387b592e6a439 | p7@SHOX2 |
| 1.33e-29 | FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_1524d5ddaeddd3d04dc48fa62e142ff1 | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_1524d5ddaeddd3d04dc48fa62e142ff1 | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_1524d5ddaeddd3d04dc48fa62e142ff1 | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_1524d5ddaeddd3d04dc48fa62e142ff1 | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_1524d5ddaeddd3d04dc48fa62e142ff1 | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_1524d5ddaeddd3d04dc48fa62e142ff1 | p@chrX:132670143..132670152, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_f33079d3842d5baf8c2ee18137a51306 | p@chr1:21904551..21904569, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_f33079d3842d5baf8c2ee18137a51306 | p@chr1:21904551..21904569, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_ff2b393a2346c87bc140f74a5fd388cf | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_ff2b393a2346c87bc140f74a5fd388cf | p18@MEF2D |
| 3.16e-29 | FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_ff2b393a2346c87bc140f74a5fd388cf | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_ff2b393a2346c87bc140f74a5fd388cf | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_ff2b393a2346c87bc140f74a5fd388cf | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_ff2b393a2346c87bc140f74a5fd388cf | p18@MEF2D |
| 4.2e-29 | FFCP PHASE2:Hg19::chr13:36046127..36046134,+#_406d8ce13dce720c8b66498ae41fa6bf | p@chr13:36046127..36046134, + |
| 4.2e-29 | FFCP PHASE1:Hg19::chr15:52606315..52606320,-#_406d8ce13dce720c8b66498ae41fa6bf | p@chr15:52606315..52606320, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Intramembranous bone that forms superficially in the organism.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
