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MacroAPE 1083:NKX21 f1: Difference between revisions

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534-107G3;0.619426!10429-106D6;0.836911!10464-106H5;0.815994!10827-111C8;0.820069!10789-110H6;0.75209!10828-111C9;0.302852!10788-110H5;0.867838!10792-110H9;0.482641!10765-110E9;0.564977!10829-111D1;0.724699!10830-111D2;0.647551!10831-111D3;0.864562!10832-111D4;0.614123!10833-111D5;0.881596!10764-110E8;0.624623!10770-110F5;0.769787!10399-106A3;0.881505!10400-106A4;0.618203!10405-106A9;0.466131!10834-111D6;0.568536!10835-111D7;0.936095!10836-111D8;0.642858!10837-111D9;0.468089!10699-109G6;0.597504!10802-111A1;0.673303!10796-110I4;0.789321!10010-101C1;0.586568!10810-111A9;0.404018!10421-106C7;0.365006!10708-109H6;0.802523!12235-129G3;0.679375!12236-129G4;0.923324!12237-129G5;0.0714165!10167-103B5;0.741891!10151-102I7;0.92679!10428-106D5;0.97075!10795-110I3;0.0381204!10805-111A4;0.732014!10052-101G7;0.639179!10189-103D9;0.650445!10589-108D4;0.394346!10425-106D2;0.286654!10427-106D4;0.360705!10702-109G9;0.834379!10432-106D9;0.857681!10496-107C1;0.443392!10718-109I7;0.522542!10011-101C2;0.497996!10053-101G8;0.751108!10686-109F2;0.0361932!10084-102B3;0.695288!10012-101C3;0.936016!10085-102B4;0.962272!10482-107A5;0.533859!10419-106C5;0.440906!10080-102A8;0.388055!10760-110E4;0.429586!10709-109H7;0.374922!10710-109H8;0.209046!10703-109H1;0.487947!10719-109I8;0.414558!10642-109A3;0.149611!10177-103C6;0.217478!10164-103B2;0.453349!10173-103C2;0.762773!10166-103B4;0.736212!10083-102B2;0.595586!10188-103D8;0.767177!10552-107I3;0.817594!10553-107I4;0.471471!10013-101C4;0.886353!10536-107G5;0.671235!10618-108G6;0.0410471!10423-106C9;0.24245!10785-110H2;0.458776!12238-129G6;0.706483!12239-129G7;0.171817!12240-129G8;0.68887!10416-106C2;0.259651!10801-110I9;0.614404!10766-110F1;0.98478!10824-111C5;0.463674!10825-111C6;0.800872!10826-111C7;0.713719!10454-106G4;0.703616!10409-106B4;0.805036!10638-108I8;0.97546!10636-108I6;0.427453!10513-107D9;0.282758!10420-106C6;0.230167!10082-102B1;0.0935928!10014-101C5;0.869249!10070-101I7;0.894553!10452-106G2;0.861945!10453-106G3;0.895862!10449-106F8;0.508695!10042-101F6;0.514947!10069-101I6;0.578844!10193-103E4;0.120431!10631-108I1;0.55402!10438-106E6;0.814655!10488-107B2;0.28295!10196-103E7;0.580129!10071-101I8;0.227497!10071-101I8;0.83378!10041-101F5;0.34527!10451-106G1;0.626565!10450-106F9;0.573799!10604-108F1;0.286267!10605-108F2;0.414537!10606-108F3;0.724575!10603-108E9;0.834877!10497-107C2;0.808353!10448-106F7;0.0584894!10643-109A4;0.0976283!10426-106D3;0.563035!10431-106D8;0.426616!10197-103E8;0.184295!10443-106F2;0.572273!10815-111B5;0.312835!10816-111B6;0.513257!10817-111B7;0.396343!10015-101C6;0.479304!10410-106B5;0.592061!10054-101G9;0.176253!10758-110E2;0.689553!10711-109H9;0.00706276!10040-101F4;0.136401!10470-106I2;0.934618!10415-106C1;0.602952!10198-103E9;0.0590016!10614-108G2;0.773647!10612-108F9;0.316487!10549-107H9;0.295133!10615-108G3;0.307004!10487-107B1;0.00919089!10433-106E1;0.863393!10688-109F4;0.106252!10444-106F3;0.842202!10444-106F3;0.103596!10485-107A8;0.0736107!10413-106B8;0.406055!10175-103C4;0.00868232!10161-103A8;0.421641!12131-128D7;0.592763!10624-108H3;0.293599!10712-109I1;0.337716!10205-103F7;0.421604!10206-103F8;0.189701!10207-103F9;0.388988!10050-101G5;0.776669!10051-101G6;0.261523!10016-101C7;0.21976!10046-101G1;0.174165!10778-110G4;0.239394!10633-108I3;0.990714!10818-111B8;0.0287917!10819-111B9;0.0670052!10820-111C1;0.106701!10484-107A7;0.0867581!10808-111A7;0.0251052!10169-103B7;0.766183!10153-102I9;0.97715!13425-144D5;0.898467!13433-144E4;0.748366!13437-144E8;0.473447!11904-125F5;0.530295!11905-125F6;0.0633882!10039-101F3;0.169661!10791-110H8;0.926369!10017-101C8;0.939377!10045-101F9;0.607508!10509-107D5;0.808192!10839-111E2;0.821511!10692-109F8;0.631214!10079-102A7;0.0486677!10078-102A6;0.284176!10721-110A1;0.168798!10569-108B2;0.663983!10570-108B3;0.596549!10571-108B4;0.513632!10647-109A8;0.210372!10752-110D5;0.15578!10782-110G8;0.665813!10726-110A6;0.0142528!10018-101C9;0.0377722!10086-102B5;0.369843!10182-103D2;0.909607!10165-103B3;0.611799!10499-107C4;0.597589!10408-106B3;0.452175!10019-101D1;0.122058!10068-101I5;0.214492!10075-102A3;0.242975!10077-102A5;0.21961!10727-110A7;0.0653146!10775-110G1;0.979681!10412-106B7;0.655357!12231-129F8;0.216948!12232-129F9;0.900831!12233-129G1;0.512533!12234-129G2;0.561895!10414-106B9;0.642073!10170-103B8;0.0534188!10183-103D3;0.904228!10150-102I6;0.896287!10174-103C3;0.991234!10155-103A2;0.527249!10038-101F2;0.551347!10838-111E1;0.514936!10759-110E3;0.270584!10514-107E1;0.254524!10465-106H6;0.534623!10691-109F7;0.210825!10843-111E6;0.123032!10844-111E7;0.731084!11747-123G1;0.53704!11748-123G2;0.335436!11749-123G3;0.428052!11750-123G4;0.367572!11751-123G5;0.147771!11840-124H4;0.150824!11752-123G6;0.245944!11753-123G7;0.983814!11754-123G8;0.475067!11755-123G9;0.848718!11756-123H1;0.81462!11833-124G6;0.340958!11760-123H5;0.203918!11836-124G9;0.105332!11758-123H3;0.613006!11835-124G8;0.420159!11762-123H7;0.478709!11838-124H2;0.145039!11757-123H2;0.363743!11759-123H4;0.232229!11761-123H6;0.270398!11842-124H6;0.397511!11837-124H1;0.171687!10568-108B1;0.483051!13230-141I8;0.377738!13231-141I9;0.374151!10696-109G3;0.434534!10493-107B7;0.714759!10494-107B8;0.600738!10850-111F4;0.601545!10851-111F5;0.818167!10852-111F6;0.679725!10853-111F7;0.889991!10854-111F8;0.536059!10855-111F9;0.541363!10856-111G1;0.910437!10847-111F1;0.567312!10846-111E9;0.432673!10848-111F2;0.190602!10845-111E8;0.331107!10857-111G2;0.441569!10858-111G3;0.571788!10156-103A3;0.348554!11901-125F2;0.897997!11902-125F3;0.0704941!11903-125F4;0.179839!10689-109F5;0.123141!10648-109A9;0.692939!10784-110H1;0.255501!10744-110C6;0.341189!10772-110F7;0.208465!10474-106I6;0.648673!10600-108E6;0.940393!10684-109E9;0.339467!12226-129F3;0.0224624!12227-129F4;0.332841!10508-107D4;0.262459!10539-107G8;0.0748999!10607-108F4;0.167909!10555-107I6;0.0356768!10774-110F9;0.0931139!10637-108I7;0.285821!10663-109C6;0.278316!10728-110A8;0.32913!10729-110A9;0.55903!10430-106D7;0.924294!10730-110B1;0.948568!10813-111B3;0.373963!10812-111B2;0.759411!10037-101F1;0.721657!10172-103C1;0.887239!10163-103B1;0.778095!10076-102A4;0.937378!10073-102A1;0.977688!10036-101E9;0.278269!10195-103E6;0.925126!10277-104E7;0.992162!10434-106E2;0.473693!10550-107I1;0.0644882!10545-107H5;0.196574!10544-107H4;0.288012!10704-109H2;0.146019!10510-107D6;0.189052!10558-107I9;0.492413!10020-101D2;0.85411!10732-110B3;0.906977!10049-101G4;0.0569306!10698-109G5;0.542049!10437-106E5;0.641002!10417-106C3;0.624498!10035-101E8;0.352329!10171-103B9;0.999928!10157-103A4;0.989823!10034-101E7;0.983305!10072-101I9;0.946042!10199-103F1;0.294597!10200-103F2;0.680572!10697-109G4;0.275396!10723-110A3;0.0729083!10179-103C8;0.237267!10160-103A7;0.738265!10180-103C9;0.632849!10162-103A9;0.656702!10021-101D3;0.426987!10840-111E3;0.915592!10706-109H4;0.348106!10033-101E6;0.0297816!10032-101E5;0.710305!10490-107B4;0.932866!10439-106E7;0.258!10022-101D4;0.157856!10176-103C5;0.914123!10469-106I1;0.867473!10067-101I4;0.087037!10411-106B6;0.956214!10471-106I3;0.147528!10030-101E3;0.170678!10475-106I7;0.512226!10787-110H4;0.192519!10477-106I9;0.340535!10695-109G2;0.282102!11771-123I7;0.501861!11772-123I8;0.124322!11773-123I9;0.233421!10093-102C3;0.327029!10442-106F1;0.932048!10442-106F1;0.0166984!10201-103F3;0.0109416!10639-108I9;0.479603!11843-124H7;0.944995!11841-124H5;0.306644!10693-109F9;0.786198!10436-106E4;0.149305!10483-107A6;0.248951!10282-104F3;0.310042!10023-101D5;0.194381!10066-101I3;0.290289!10065-101I2;0.217406!10800-110I8;0.262807!10610-108F7;0.320057!10841-111E4;0.0986995!10541-107H1;0.691973!10842-111E5;0.146884!10562-108A4;0.108439!10024-101D6;0.475!10064-101I1;0.893239!10609-108F6;0.872462!10048-101G3;0.444424!10781-110G7;0.746568!10181-103D1;0.0298036!10159-103A6;0.460141!10056-101H2;0.443842!10737-110B8;0.442998!10025-101D7;0.467135!10044-101F8;0.210382!10424-106D1;0.187971!10463-106H4;0.672964!10616-108G4;0.328753!10486-107A9;0.0921618!10062-101H8;0.465929!10202-103F4;0.534403!10158-103A5;0.329928!10441-106E9;0.38052!10031-101E4;0.403482!10063-101H9;0.981619!10063-101H9;0.278733!11763-123H8;0.92236!11765-123I1;0.281121!11768-123I4;0.353802!10807-111A6;0.420132!10790-110H7;0.270624!10798-110I6;0.396241!10786-110H3;0.338711!10591-108D6;0.407434!10593-108D8;0.302973!10590-108D5;0.364505!10026-101D8;0.590032!10096-102C6;0.984671!10168-103B6;0.0852935!10154-103A1;0.728458!10209-103G2;0.583409!10061-101H7;0.0957937!10027-101D9;0.113252!10043-101F7;0.036987!10783-110G9;0.0198952!10028-101E1;0.734234!10060-101H6;0.331069!10203-103F5;0.145929!10059-101H5;0.115489!10047-101G2;0.123619!10029-101E2;0.124096!10058-101H4;0.53865!10418-106C4;0.190327!10492-107B6;0.111241!10694-109G1;0.0260466!10797-110I5;0.569858!10057-101H3;0.103277!10100-102D1;0.28834!10055-101H1;0.738902!10204-103F6;0.8267!10191-103E2;0.708995!10563-108A5;0.0741218
|name=NKX21_f1
|name=NKX21_f1
|tomtom_result=tin#MA0247.1;0;6.50306e-06;0.00309545;0.0061828;8;CTCAAGTGCT;CTCAAGTG;+!ceh-22#MA0264.1;1;1.75946e-05;0.00837502;0.00836405;10;CTCAAGTGCT;TTTCAAGTGGT;-!vnd#MA0253.1;1;0.000274767;0.130789;0.0870784;8;CTCAAGTGCT;TTTCAAGTG;+!Nkx3-2#MA0122.1;-1;0.000660159;0.314236;0.156912;9;CTCAAGTGCT;TTAAGTGGA;+!Esrrb#MA0141.1;2;0.00376267;1.79103;0.715474;10;CTCAAGTGCT;AGCTCAAGGTCA;+!CBF1#MA0281.1;-1;0.00458231;2.18118;0.726108;8;CTCAAGTGCT;TCACGTGC;-!bap#MA0211.1;-1;0.0069319;3.29958;0.941504;7;CTCAAGTGCT;TTAAGTG;+!Pax5#MA0014.1;8;0.0107723;5.12762;0.998691;10;CTCAAGTGCT;CCGCTACGCTTCAGTGCTCT;-!EBF1#MA0154.1;1;0.0141328;6.7272;0.998691;9;CTCAAGTGCT;ACCCAAGGGA;+!Hltf#MA0109.1;1;0.0149339;7.10856;0.998691;9;CTCAAGTGCT;ATATAAGGTT;-!Nkx2-5#MA0063.1;-1;0.0158619;7.55025;0.998691;7;CTCAAGTGCT;TTAATTG;+!Myc#MA0147.1;0;0.0166552;7.92787;0.998691;10;CTCAAGTGCT;GCCACGTGCG;-!Mycn#MA0104.2;0;0.0175786;8.36742;0.998691;10;CTCAAGTGCT;GCCACGTGCG;-!Myb#MA0100.1;-2;0.0185556;8.83246;0.998691;8;CTCAAGTGCT;CAACGGCC;-!TYE7#MA0409.1;-1;0.0201333;9.58344;0.998691;7;CTCAAGTGCT;TCACGTG;-
}}
}}

Latest revision as of 13:59, 7 September 2012

Full Name: NKX21_f1

Motif matrix
POACGT
17.992875647668407540.40997409326427523.47733160621764313.451424870466367
29.80310880829015720.4974093264248723.230569948186535551.80051813471506
30.1392487046632123553.4993523316062118.96567357512958612.727331606217668
458.289507772020735.15220207253886819.5226683937824252.367227979274613
585.331606217616610.00.00.0
61.00259067357512750.084.329015544041540.0
711.836139896373113.14702072538860531.9993523316062638.34909326424878
814.1476683937824370.059.04145077720214412.142487046632114
95.26360103626943644.58743523316070416.40349740932642319.077072538860104
1017.26683937823835524.0621761658031111.02849740932643632.97409326424879

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
tin#MA0247.106.50306e-060.003095450.00618288CTCAAGTGCTCTCAAGTG+
ceh-22#MA0264.111.75946e-050.008375020.0083640510CTCAAGTGCTTTTCAAGTGGT-
vnd#MA0253.110.0002747670.1307890.08707848CTCAAGTGCTTTTCAAGTG+
Nkx3-2#MA0122.1-10.0006601590.3142360.1569129CTCAAGTGCTTTAAGTGGA+
Esrrb#MA0141.120.003762671.791030.71547410CTCAAGTGCTAGCTCAAGGTCA+
CBF1#MA0281.1-10.004582312.181180.7261088CTCAAGTGCTTCACGTGC-
bap#MA0211.1-10.00693193.299580.9415047CTCAAGTGCTTTAAGTG+
Pax5#MA0014.180.01077235.127620.99869110CTCAAGTGCTCCGCTACGCTTCAGTGCTCT-
EBF1#MA0154.110.01413286.72720.9986919CTCAAGTGCTACCCAAGGGA+
Hltf#MA0109.110.01493397.108560.9986919CTCAAGTGCTATATAAGGTT-
Nkx2-5#MA0063.1-10.01586197.550250.9986917CTCAAGTGCTTTAATTG+
Myc#MA0147.100.01665527.927870.99869110CTCAAGTGCTGCCACGTGCG-
Mycn#MA0104.200.01757868.367420.99869110CTCAAGTGCTGCCACGTGCG-
Myb#MA0100.1-20.01855568.832460.9986918CTCAAGTGCTCAACGGCC-
TYE7#MA0409.1-10.02013339.583440.9986917CTCAAGTGCTTCACGTG-
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