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MacroAPE 1083:AAYAATC,motif540: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1648.992;2.136;2.136;482.736!2;1241.016;890.712;2.136;2.136!3;534;912.072;2.136;687.792!4;1710.936;2.136;420.792;2.136!5;1676.76;2.136;454.9...")
 
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0789-110H6;0.0267216!10828-111C9;0.0912145!10788-110H5;0.0731811!10792-110H9;0.0732422!10765-110E9;0.00758616!10829-111D1;0.0286298!10830-111D2;0.0439344!10831-111D3;0.138828!10832-111D4;0.0907793!10833-111D5;0.140725!10764-110E8;0.147386!10770-110F5;0.0822074!10399-106A3;0.0569427!10400-106A4;0.0770408!10405-106A9;0.0842225!10834-111D6;0.0711966!10835-111D7;0.042909!10836-111D8;0.178531!10837-111D9;0.930082!10699-109G6;0.620662!10802-111A1;0.230884!10796-110I4;0.365227!10010-101C1;0.320691!10810-111A9;0.530085!10421-106C7;0.652335!10708-109H6;0.363193!12235-129G3;0.65306!12236-129G4;0.954645!12237-129G5;0.991179!10167-103B5;0.700397!10151-102I7;0.811474!10428-106D5;0.403042!10795-110I3;0.740763!10805-111A4;0.179241!10052-101G7;0.520587!10189-103D9;0.695594!10589-108D4;0.344959!10425-106D2;0.775046!10427-106D4;0.0625738!10702-109G9;0.37014!10432-106D9;0.678469!10496-107C1;0.849188!10718-109I7;0.869538!10011-101C2;0.108057!10053-101G8;0.534014!10686-109F2;0.72435!10084-102B3;0.636624!10012-101C3;0.535084!10085-102B4;0.463939!10482-107A5;0.385418!10419-106C5;0.791367!10080-102A8;0.704506!10760-110E4;0.44663!10709-109H7;0.297363!10710-109H8;0.114767!10703-109H1;0.610863!10719-109I8;0.858782!10642-109A3;0.674593!10177-103C6;0.407534!10164-103B2;0.786928!10173-103C2;0.34878!10166-103B4;0.545211!10083-102B2;0.395539!10188-103D8;0.557138!10552-107I3;0.359472!10553-107I4;0.961858!10013-101C4;0.297872!10536-107G5;0.506744!10618-108G6;0.816051!10423-106C9;0.801804!10785-110H2;0.88609!12238-129G6;0.621349!12239-129G7;0.225997!12240-129G8;0.445236!10416-106C2;0.374002!10801-110I9;0.559663!10766-110F1;0.00397552!10824-111C5;0.0775159!10825-111C6;0.600475!10826-111C7;0.744922!10454-106G4;0.801846!10409-106B4;0.980869!10638-108I8;0.224276!10636-108I6;0.646483!10513-107D9;0.747268!10420-106C6;0.67432!10082-102B1;0.981005!10014-101C5;0.229977!10070-101I7;0.769984!10452-106G2;0.915473!10453-106G3;0.769735!10449-106F8;0.818562!10042-101F6;0.815879!10069-101I6;0.314704!10193-103E4;0.56714!10631-108I1;0.463453!10438-106E6;0.371287!10488-107B2;0.946072!10196-103E7;0.526977!10071-101I8;0.663378!10071-101I8;0.872065!10041-101F5;0.347162!10451-106G1;0.947308!10450-106F9;0.77309!10604-108F1;0.670807!10605-108F2;0.887768!10606-108F3;0.683697!10603-108E9;0.877159!10497-107C2;0.333388!10448-106F7;0.0716962!10643-109A4;0.56329!10426-106D3;0.372057!10431-106D8;0.877198!10197-103E8;0.971969!10443-106F2;0.536718!10815-111B5;0.737904!10816-111B6;0.588741!10817-111B7;0.829147!10015-101C6;0.661064!10410-106B5;0.509058!10054-101G9;0.798186!10758-110E2;0.448956!10711-109H9;0.911918!10040-101F4;0.747804!10470-106I2;0.361412!10415-106C1;0.833562!10198-103E9;0.397438!10614-108G2;0.856245!10612-108F9;0.859291!10549-107H9;0.583205!10615-108G3;0.53705!10487-107B1;0.50881!10433-106E1;0.67422!10688-109F4;0.625875!10444-106F3;0.572023!10444-106F3;0.410812!10485-107A8;0.381457!10413-106B8;0.86564!10175-103C4;0.343185!10161-103A8;0.759311!12131-128D7;0.405199!10624-108H3;0.207466!10712-109I1;0.680757!10205-103F7;0.694564!10206-103F8;0.5706!10207-103F9;0.774324!10050-101G5;0.740666!10051-101G6;0.79281!10016-101C7;0.766355!10046-101G1;0.964903!10778-110G4;0.740801!10633-108I3;0.823961!10818-111B8;0.454626!10819-111B9;0.333768!10820-111C1;0.306249!10484-107A7;0.372644!10808-111A7;0.05933!10169-103B7;0.567667!10153-102I9;0.723657!13425-144D5;0.320128!13433-144E4;0.529612!13437-144E8;0.435929!11904-125F5;0.662319!11905-125F6;0.0191866!10039-101F3;0.0585783!10791-110H8;0.343097!10017-101C8;0.432319!10045-101F9;0.270512!10509-107D5;0.0316643!10839-111E2;0.120505!10692-109F8;0.366183!10079-102A7;0.945926!10078-102A6;0.460429!10721-110A1;0.568751!10569-108B2;0.275074!10570-108B3;0.425057!10571-108B4;0.559656!10647-109A8;0.42292!10752-110D5;0.239101!10782-110G8;0.570494!10726-110A6;0.284324!10018-101C9;0.82138!10086-102B5;0.280782!10182-103D2;0.178251!10165-103B3;0.644153!10499-107C4;0.37137!10408-106B3;0.0373513!10019-101D1;0.255692!10068-101I5;0.791062!10075-102A3;0.887098!10077-102A5;0.355303!10727-110A7;0.41407!10775-110G1;0.50232!10412-106B7;0.313954!12231-129F8;0.38715!12232-129F9;0.337208!12233-129G1;0.539587!12234-129G2;0.43061!10414-106B9;0.338894!10170-103B8;0.0952008!10183-103D3;0.642047!10150-102I6;0.720287!10174-103C3;0.468392!10155-103A2;0.436796!10038-101F2;0.23367!10838-111E1;0.381735!10759-110E3;0.588472!10514-107E1;0.869842!10465-106H6;0.18546!10691-109F7;0.434257!10843-111E6;0.0436995!10844-111E7;0.904501!11747-123G1;0.524765!11748-123G2;0.819385!11749-123G3;0.773474!11750-123G4;0.857653!11751-123G5;0.864973!11840-124H4;0.572146!11752-123G6;0.408296!11753-123G7;0.261012!11754-123G8;0.861527!11755-123G9;0.502092!11756-123H1;0.487823!11833-124G6;0.941931!11760-123H5;0.918963!11836-124G9;0.867595!11758-123H3;0.937609!11835-124G8;0.844333!11762-123H7;0.551511!11838-124H2;0.468842!11757-123H2;0.501617!11759-123H4;0.747001!11761-123H6;0.601536!11842-124H6;0.90306!11837-124H1;0.812661!10568-108B1;0.318923!13230-141I8;0.379011!13231-141I9;0.806146!10696-109G3;0.999912!10493-107B7;0.0620663!10494-107B8;0.909482!10850-111F4;0.708257!10851-111F5;0.0760697!10852-111F6;0.368452!10853-111F7;0.794265!10854-111F8;0.217889!10855-111F9;0.34662!10856-111G1;0.495632!10847-111F1;0.813827!10846-111E9;0.675342!10848-111F2;0.716629!10845-111E8;0.65061!10857-111G2;0.683354!10858-111G3;0.724104!10156-103A3;0.978685!11901-125F2;0.444812!11902-125F3;0.154795!11903-125F4;0.376699!10689-109F5;0.22449!10648-109A9;0.799124!10784-110H1;0.974112!10744-110C6;0.716562!10772-110F7;0.520529!10474-106I6;0.195797!10600-108E6;0.393053!10684-109E9;0.723349!12226-129F3;0.678572!12227-129F4;0.582643!10508-107D4;0.871165!10539-107G8;0.89077!10607-108F4;0.897088!10555-107I6;0.99274!10774-110F9;0.855304!10637-108I7;0.97892!10663-109C6;0.621261!10728-110A8;0.407418!10729-110A9;0.94843!10430-106D7;0.820638!10730-110B1;0.757486!10813-111B3;0.147944!10812-111B2;0.856749!10037-101F1;0.784316!10172-103C1;0.337222!10163-103B1;0.557258!10076-102A4;0.44337!10073-102A1;0.574984!10036-101E9;0.360628!10195-103E6;0.331236!10277-104E7;0.519446!10434-106E2;0.859914!10550-107I1;0.921416!10545-107H5;0.985109!10544-107H4;0.256648!10704-109H2;0.836437!10510-107D6;0.458847!10558-107I9;0.103405!10020-101D2;0.336655!10732-110B3;0.810711!10049-101G4;0.273593!10698-109G5;0.699314!10437-106E5;0.508097!10417-106C3;0.668595!10035-101E8;0.491807!10171-103B9;0.379864!10157-103A4;0.656722!10034-101E7;0.670576!10072-101I9;0.409868!10199-103F1;0.495808!10200-103F2;0.962759!10697-109G4;0.492949!10723-110A3;0.789914!10179-103C8;0.575176!10160-103A7;0.994749!10180-103C9;0.646358!10162-103A9;0.904358!10021-101D3;0.585431!10840-111E3;0.649145!10706-109H4;0.711692!10033-101E6;0.713555!10032-101E5;0.571697!10490-107B4;0.421484!10439-106E7;0.856807!10022-101D4;0.422524!10176-103C5;0.762265!10469-106I1;0.345965!10067-101I4;0.803106!10411-106B6;0.588365!10471-106I3;0.84024!10030-101E3;0.450478!10475-106I7;0.105019!10787-110H4;0.891937!10477-106I9;0.75528!10695-109G2;0.447183!11771-123I7;0.719475!11772-123I8;0.719546!11773-123I9;0.66513!10093-102C3;0.731866!10442-106F1;0.700551!10442-106F1;0.573434!10201-103F3;0.596972!10639-108I9;0.473015!11843-124H7;0.656807!11841-124H5;0.767012!10693-109F9;0.834!10436-106E4;0.215579!10483-107A6;0.925182!10282-104F3;0.914798!10023-101D5;0.546596!10066-101I3;0.645566!10065-101I2;0.456582!10800-110I8;0.444027!10610-108F7;0.457786!10841-111E4;0.293727!10541-107H1;0.993184!10842-111E5;0.247846!10562-108A4;0.986815!10024-101D6;0.527294!10064-101I1;0.888129!10609-108F6;0.875211!10048-101G3;0.977921!10781-110G7;0.419872!10181-103D1;0.146718!10159-103A6;0.833291!10056-101H2;0.486969!10737-110B8;0.627078!10025-101D7;0.735779!10044-101F8;0.561747!10424-106D1;0.627125!10463-106H4;0.464009!10616-108G4;0.777065!10486-107A9;0.51377!10062-101H8;0.981156!10202-103F4;0.833156!10158-103A5;0.575655!10441-106E9;0.534862!10031-101E4;0.694992!10063-101H9;0.371531!10063-101H9;0.2719!11763-123H8;0.893124!11765-123I1;0.930502!11768-123I4;0.971849!10807-111A6;0.97079!10790-110H7;0.554763!10798-110I6;0.962094!10786-110H3;0.79009!10591-108D6;0.66119!10593-108D8;0.913365!10590-108D5;0.61853!10026-101D8;0.314048!10096-102C6;0.877211!10168-103B6;0.284403!10154-103A1;0.844399!10209-103G2;0.420813!10061-101H7;0.415519!10027-101D9;0.827644!10043-101F7;0.807167!10783-110G9;0.958012!10028-101E1;0.630516!10060-101H6;0.912819!10203-103F5;0.433385!10059-101H5;0.418347!10047-101G2;0.650709!10029-101E2;0.669994!10058-101H4;0.755988!10418-106C4;0.835623!10492-107B6;0.864393!10694-109G1;0.67597!10797-110I5;0.413964!10057-101H3;0.928644!10100-102D1;0.833942!10055-101H1;0.740865!10204-103F6;0.403608!10191-103E2;0.799553!10563-108A5;0.288705
|name=AAYAATC,motif540,CNhs10645,T:2136.0(58.04%),B:31315.1(48.39%),P:1e-31
|name=AAYAATC,motif540,CNhs10645,T:2136.0(58.04%),B:31315.1(48.39%),P:1e-31
|tomtom_result=onecut#MA0235.1;-2;0.00422648;2.01181;1;5;AACAATC;AAATCAA;-!Foxd3#MA0041.1;5;0.00430231;2.0479;1;7;AACAATC;AAACAAACATTC;-!oc#MA0234.1;-2;0.0083052;3.95327;1;5;AACAATC;TAATCC;+!bcd#MA0212.1;-2;0.0104803;4.98861;1;5;AACAATC;TAATCC;+!Sox5#MA0087.1;1;0.012345;5.87623;1;6;AACAATC;AAACAAT;+!Gsc#MA0190.1;-2;0.0126049;5.99994;1;5;AACAATC;TAATCC;+!HAP4#MA0315.1;0;0.0141571;6.73878;1;7;AACAATC;ACCAATCAGAGGCGA;+!CAD1#MA0279.1;3;0.0156797;7.46354;1;7;AACAATC;ATTAGTAAGC;+!HAP5#MA0316.1;0;0.0183703;8.74425;1;7;AACAATC;ACCAATCAGATCCCA;-!RTG3#MA0376.1;1;0.0191501;9.11544;1;7;AACAATC;GACTAAGCACGTGCTAATAT;-!Gfi#MA0038.1;-1;0.0200786;9.55741;1;6;AACAATC;CAAATCACTG;+
}}
}}

Latest revision as of 14:24, 7 September 2012

Full Name: AAYAATC,motif540,CNhs10645,T:2136.0(58.04%),B:31315.1(48.39%),P:1e-31

Motif matrix
POACGT
11648.9922.1362.136482.736
21241.016890.7122.1362.136
3534912.0722.136687.792
41710.9362.136420.7922.136
51676.762.136454.9682.136
62.1362.136709.1521422.576
72.1362129.5922.1362.136

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
onecut#MA0235.1-20.004226482.0118115AACAATCAAATCAA-
Foxd3#MA0041.150.004302312.047917AACAATCAAACAAACATTC-
oc#MA0234.1-20.00830523.9532715AACAATCTAATCC+
bcd#MA0212.1-20.01048034.9886115AACAATCTAATCC+
Sox5#MA0087.110.0123455.8762316AACAATCAAACAAT+
Gsc#MA0190.1-20.01260495.9999415AACAATCTAATCC+
HAP4#MA0315.100.01415716.7387817AACAATCACCAATCAGAGGCGA+
CAD1#MA0279.130.01567977.4635417AACAATCATTAGTAAGC+
HAP5#MA0316.100.01837038.7442517AACAATCACCAATCAGATCCCA-
RTG3#MA0376.110.01915019.1154417AACAATCGACTAAGCACGTGCTAATAT-
Gfi#MA0038.1-10.02007869.5574116AACAATCCAAATCACTG+
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