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MacroAPE 1083:6-TTACAGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;37.792;28.344;1.181;1113.683!2;53.145;1.181;193.684;932.99!3;844.415;44.878;170.064;121.643!4;222.028;845.596;1.181;112.195!5;1123.131;1.181...")
 
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1699!10827-111C8;0.164949!10789-110H6;0.110518!10828-111C9;0.0949322!10788-110H5;0.0906268!10792-110H9;0.0474751!10765-110E9;0.0780882!10829-111D1;0.0989201!10830-111D2;0.120141!10831-111D3;0.133204!10832-111D4;0.10915!10833-111D5;0.103148!10764-110E8;0.130161!10770-110F5;0.193359!10399-106A3;0.152692!10400-106A4;0.113399!10405-106A9;0.0868324!10834-111D6;0.116747!10835-111D7;0.107776!10836-111D8;0.0488242!10837-111D9;0.197206!10699-109G6;0.0799148!10802-111A1;0.0531946!10796-110I4;0.0994574!10010-101C1;0.132596!10810-111A9;0.00360595!10421-106C7;0.0495126!10708-109H6;0.0151354!12235-129G3;0.118069!12236-129G4;0.602905!12237-129G5;0.817694!10167-103B5;0.562873!10151-102I7;0.0679306!10428-106D5;0.0490308!10795-110I3;0.853262!10805-111A4;0.0113659!10052-101G7;0.0282115!10189-103D9;0.034308!10589-108D4;0.00200244!10425-106D2;0.177674!10427-106D4;0.350908!10702-109G9;0.211275!10432-106D9;0.584652!10496-107C1;0.220381!10718-109I7;0.28394!10011-101C2;0.172928!10053-101G8;0.0222136!10686-109F2;0.431102!10084-102B3;0.375071!10012-101C3;0.0610307!10085-102B4;0.0865803!10482-107A5;0.0808897!10419-106C5;0.126893!10080-102A8;0.201365!10760-110E4;0.00106984!10709-109H7;0.169884!10710-109H8;0.201731!10703-109H1;0.0470101!10719-109I8;0.548259!10642-109A3;0.98221!10177-103C6;0.870783!10164-103B2;0.0493378!10173-103C2;0.0677742!10166-103B4;0.0456265!10083-102B2;0.0500588!10188-103D8;0.0655996!10552-107I3;0.0734736!10553-107I4;0.0868706!10013-101C4;0.774676!10536-107G5;0.0163821!10618-108G6;0.867952!10423-106C9;0.1018!10785-110H2;0.10284!12238-129G6;0.0586787!12239-129G7;0.665649!12240-129G8;0.901078!10416-106C2;0.800511!10801-110I9;0.207508!10766-110F1;0.0231291!10824-111C5;0.151021!10825-111C6;0.0975891!10826-111C7;0.0903887!10454-106G4;0.0991075!10409-106B4;0.137974!10638-108I8;0.18538!10636-108I6;0.0996628!10513-107D9;0.166919!10420-106C6;0.0723452!10082-102B1;0.405102!10014-101C5;0.0204875!10070-101I7;0.0819447!10452-106G2;0.0132119!10453-106G3;0.896646!10449-106F8;0.452533!10042-101F6;0.361114!10069-101I6;0.0157433!10193-103E4;0.00216594!10631-108I1;0.0733981!10438-106E6;0.289942!10488-107B2;0.220922!10196-103E7;0.0509773!10071-101I8;0.13672!10071-101I8;0.0535099!10041-101F5;0.0775365!10451-106G1;0.0190731!10450-106F9;0.590156!10604-108F1;0.421193!10605-108F2;0.0123633!10606-108F3;0.0325927!10603-108E9;0.0140765!10497-107C2;0.00518044!10448-106F7;0.361779!10643-109A4;0.110692!10426-106D3;0.158147!10431-106D8;0.179883!10197-103E8;0.0692064!10443-106F2;0.0320722!10815-111B5;0.300664!10816-111B6;0.0427334!10817-111B7;0.0968151!10015-101C6;0.0500004!10410-106B5;0.0533286!10054-101G9;0.331!10758-110E2;0.0333694!10711-109H9;0.0553291!10040-101F4;0.0163533!10470-106I2;0.0830578!10415-106C1;0.224823!10198-103E9;0.0299927!10614-108G2;0.10936!10612-108F9;0.11635!10549-107H9;0.165551!10615-108G3;0.16859!10487-107B1;0.940863!10433-106E1;0.120227!10688-109F4;0.00518665!10444-106F3;0.186967!10444-106F3;0.0557974!10485-107A8;0.0728237!10413-106B8;0.0520449!10175-103C4;0.257909!10161-103A8;0.0167751!12131-128D7;0.0140053!10624-108H3;0.203275!10712-109I1;0.503938!10205-103F7;0.0191053!10206-103F8;0.00646798!10207-103F9;0.00951799!10050-101G5;0.00505581!10051-101G6;0.013328!10016-101C7;0.0073496!10046-101G1;0.00351391!10778-110G4;0.00715686!10633-108I3;0.639885!10818-111B8;0.21313!10819-111B9;0.0625443!10820-111C1;0.0500687!10484-107A7;0.0584072!10808-111A7;0.587932!10169-103B7;0.164205!10153-102I9;0.0752812!13425-144D5;0.0351302!13433-144E4;0.0209257!13437-144E8;0.0205839!11904-125F5;0.0212324!11905-125F6;0.370757!10039-101F3;0.397849!10791-110H8;0.0769271!10017-101C8;0.225272!10045-101F9;0.0842894!10509-107D5;0.0143511!10839-111E2;0.0939572!10692-109F8;0.121626!10079-102A7;0.165707!10078-102A6;0.0124087!10721-110A1;0.00411744!10569-108B2;0.0859723!10570-108B3;0.419149!10571-108B4;0.468491!10647-109A8;0.420418!10752-110D5;0.452563!10782-110G8;0.165436!10726-110A6;0.892154!10018-101C9;0.0187345!10086-102B5;0.997824!10182-103D2;0.98669!10165-103B3;0.0513224!10499-107C4;0.042418!10408-106B3;0.0175888!10019-101D1;0.150589!10068-101I5;0.0424024!10075-102A3;0.00352149!10077-102A5;0.0159104!10727-110A7;0.0577685!10775-110G1;0.137757!10412-106B7;0.458656!12231-129F8;0.742636!12232-129F9;0.000287376!12233-129G1;4.59705e-05!12234-129G2;0.00011527!10414-106B9;0.000407041!10170-103B8;0.332909!10183-103D3;0.0934069!10150-102I6;0.0754112!10174-103C3;0.0571268!10155-103A2;0.016974!10038-101F2;0.0228009!10838-111E1;0.0325064!10759-110E3;0.317575!10514-107E1;0.024427!10465-106H6;0.65909!10691-109F7;0.0809311!10843-111E6;0.021816!10844-111E7;0.504839!11747-123G1;0.409566!11748-123G2;0.334705!11749-123G3;0.547177!11750-123G4;0.617403!11751-123G5;0.164932!11840-124H4;0.357712!11752-123G6;0.0398151!11753-123G7;0.99086!11754-123G8;0.553514!11755-123G9;0.838465!11756-123H1;0.715165!11833-124G6;0.484322!11760-123H5;0.956683!11836-124G9;0.620718!11758-123H3;0.611203!11835-124G8;0.855768!11762-123H7;0.634476!11838-124H2;0.375603!11757-123H2;0.780551!11759-123H4;0.475655!11761-123H6;0.960593!11842-124H6;0.849546!11837-124H1;0.865573!10568-108B1;0.805412!13230-141I8;0.781874!13231-141I9;0.343212!10696-109G3;0.254857!10493-107B7;0.409318!10494-107B8;0.00902547!10850-111F4;0.186097!10851-111F5;0.103716!10852-111F6;0.223428!10853-111F7;0.0419575!10854-111F8;0.0137663!10855-111F9;0.0389233!10856-111G1;0.0396093!10847-111F1;0.225807!10846-111E9;0.0464933!10848-111F2;0.0253955!10845-111E8;0.0037081!10857-111G2;0.00244127!10858-111G3;0.0360276!10156-103A3;0.0250473!11901-125F2;0.0412529!11902-125F3;0.116557!11903-125F4;0.10861!10689-109F5;0.0886876!10648-109A9;0.245157!10784-110H1;0.117046!10744-110C6;0.206581!10772-110F7;0.099971!10474-106I6;0.0859535!10600-108E6;0.43946!10684-109E9;0.00393188!12226-129F3;0.58086!12227-129F4;0.248817!10508-107D4;0.0646884!10539-107G8;0.573233!10607-108F4;0.550317!10555-107I6;0.228599!10774-110F9;0.838019!10637-108I7;0.0494174!10663-109C6;0.553166!10728-110A8;0.731755!10729-110A9;0.250372!10430-106D7;0.617523!10730-110B1;0.181815!10813-111B3;0.462537!10812-111B2;0.263227!10037-101F1;0.552287!10172-103C1;0.0646919!10163-103B1;0.0893487!10076-102A4;0.0362095!10073-102A1;0.0797824!10036-101E9;0.0807949!10195-103E6;0.0831851!10277-104E7;0.0770992!10434-106E2;0.00755865!10550-107I1;0.146613!10545-107H5;0.2044!10544-107H4;0.119733!10704-109H2;0.175163!10510-107D6;0.903131!10558-107I9;0.615356!10020-101D2;0.366945!10732-110B3;0.0282635!10049-101G4;0.351156!10698-109G5;0.520935!10437-106E5;0.135384!10417-106C3;0.103592!10035-101E8;0.479965!10171-103B9;0.0808123!10157-103A4;0.0767055!10034-101E7;0.056057!10072-101I9;0.0704595!10199-103F1;0.0759563!10200-103F2;0.0865617!10697-109G4;0.0181095!10723-110A3;0.540197!10179-103C8;0.874096!10160-103A7;0.0652487!10180-103C9;0.0761249!10162-103A9;0.0166582!10021-101D3;0.0144033!10840-111E3;0.0578759!10706-109H4;0.155728!10033-101E6;0.633704!10032-101E5;0.0568126!10490-107B4;0.0877757!10439-106E7;0.0420861!10022-101D4;0.366303!10176-103C5;0.0236466!10469-106I1;0.0789896!10067-101I4;0.375537!10411-106B6;0.0239808!10471-106I3;0.0322854!10030-101E3;0.0583756!10475-106I7;0.039802!10787-110H4;0.212106!10477-106I9;0.541794!10695-109G2;0.401651!11771-123I7;0.359875!11772-123I8;0.479877!11773-123I9;0.630001!10093-102C3;0.976715!10442-106F1;0.23432!10442-106F1;0.0878602!10201-103F3;0.117811!10639-108I9;0.154554!11843-124H7;0.906757!11841-124H5;0.012493!10693-109F9;0.0211186!10436-106E4;0.0487282!10483-107A6;0.083692!10282-104F3;0.101729!10023-101D5;0.00542754!10066-101I3;0.00133658!10065-101I2;0.0083063!10800-110I8;0.0180489!10610-108F7;0.477823!10841-111E4;0.763411!10541-107H1;0.605833!10842-111E5;0.841031!10562-108A4;0.469126!10024-101D6;0.957884!10064-101I1;0.561108!10609-108F6;0.33728!10048-101G3;0.998085!10781-110G7;0.00963134!10181-103D1;0.746119!10159-103A6;0.0186541!10056-101H2;0.0139371!10737-110B8;0.0274159!10025-101D7;0.440042!10044-101F8;0.212144!10424-106D1;0.0267123!10463-106H4;0.0563542!10616-108G4;0.310849!10486-107A9;0.819582!10062-101H8;0.225541!10202-103F4;0.034043!10158-103A5;0.0362022!10441-106E9;0.00324789!10031-101E4;0.498711!10063-101H9;0.0801046!10063-101H9;0.0746622!11763-123H8;0.201488!11765-123I1;0.427639!11768-123I4;0.117193!10807-111A6;0.243545!10790-110H7;0.0608348!10798-110I6;0.0123368!10786-110H3;0.563076!10591-108D6;0.021649!10593-108D8;0.063533!10590-108D5;0.0258221!10026-101D8;0.132508!10096-102C6;0.237345!10168-103B6;0.89496!10154-103A1;0.0517181!10209-103G2;0.0157564!10061-101H7;0.0340122!10027-101D9;0.0196742!10043-101F7;0.707713!10783-110G9;0.00659705!10028-101E1;0.142555!10060-101H6;0.0454778!10203-103F5;0.0438532!10059-101H5;0.034238!10047-101G2;0.0136081!10029-101E2;0.089676!10058-101H4;0.0873891!10418-106C4;0.0160595!10492-107B6;0.260486!10694-109G1;0.0605078!10797-110I5;0.953848!10057-101H3;0.0903009!10100-102D1;0.0335923!10055-101H1;0.0279291!10204-103F6;0.00636572!10191-103E2;0.0012791!10563-108A5;0.00174731
|name=6-TTACAGC,CNhs11797,BestGuess:TGIF1.p2.SwissRegulon.nucfreq(0.732813952285307),T:1181.0(28.68%),B:9439.9(21.29%),P:1e-28
|name=6-TTACAGC,CNhs11797,BestGuess:TGIF1.p2.SwissRegulon.nucfreq(0.732813952285307),T:1181.0(28.68%),B:9439.9(21.29%),P:1e-28
|tomtom_result=Spz1#MA0111.1;4;0.00129622;0.616999;1;7;TTACAGC;AGGGTAACAGC;+!achi#MA0207.1;0;0.006892;3.28059;1;6;TTACAGC;TGACAG;+!hth#MA0227.1;0;0.00904863;4.30715;1;6;TTACAGC;TGACAG;+!vis#MA0252.1;0;0.0106088;5.04981;1;6;TTACAGC;TGACAG;+!MNB1A#MA0053.1;-2;0.019143;9.11205;1;5;TTACAGC;AAAGC;+
}}
}}

Latest revision as of 14:33, 7 September 2012

Full Name: 6-TTACAGC,CNhs11797,BestGuess:TGIF1.p2.SwissRegulon.nucfreq(0.732813952285307),T:1181.0(28.68%),B:9439.9(21.29%),P:1e-28

Motif matrix
POACGT
137.79228.3441.1811113.683
253.1451.181193.684932.99
3844.41544.878170.064121.643
4222.028845.5961.181112.195
51123.1311.18120.07736.611
61.1811.1811075.891102.747
71.1811177.4571.1811.181

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Spz1#MA0111.140.001296220.61699917TTACAGCAGGGTAACAGC+
achi#MA0207.100.0068923.2805916TTACAGCTGACAG+
hth#MA0227.100.009048634.3071516TTACAGCTGACAG+
vis#MA0252.100.01060885.0498116TTACAGCTGACAG+
MNB1A#MA0053.1-20.0191439.1120515TTACAGCAAAGC+
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