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MacroAPE 1083:GAGAGACAAAGG,motif729: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;61.692;37.248;282.852;6.208!2;339.5;0.388;29.876;18.236!3;48.5;45.396;287.896;6.208!4;356.184;0.388;16.296;15.132!5;16.684;34.92;316.608;19....")
 
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.362185!10788-110H5;0.31849!10792-110H9;0.695744!10765-110E9;0.701334!10829-111D1;0.719678!10830-111D2;0.36396!10831-111D3;0.454443!10832-111D4;0.292505!10833-111D5;0.71941!10764-110E8;0.519419!10770-110F5;0.13244!10399-106A3;0.21789!10400-106A4;0.238417!10405-106A9;0.250137!10834-111D6;0.239125!10835-111D7;0.308867!10836-111D8;0.552548!10837-111D9;0.458783!10699-109G6;0.383326!10802-111A1;0.190233!10796-110I4;0.488517!10010-101C1;0.934064!10810-111A9;0.885379!10421-106C7;0.695797!10708-109H6;0.751414!12235-129G3;0.556229!12236-129G4;0.879558!12237-129G5;0.739955!10167-103B5;0.922764!10151-102I7;0.533709!10428-106D5;0.388244!10795-110I3;0.401965!10805-111A4;0.448971!10052-101G7;0.178687!10189-103D9;0.975315!10589-108D4;0.787379!10425-106D2;0.437951!10427-106D4;0.168791!10702-109G9;0.743978!10432-106D9;0.54433!10496-107C1;0.371452!10718-109I7;0.969163!10011-101C2;0.563321!10053-101G8;0.839051!10686-109F2;0.472757!10084-102B3;0.775599!10012-101C3;0.335619!10085-102B4;0.448877!10482-107A5;0.0941229!10419-106C5;0.779541!10080-102A8;0.902348!10760-110E4;0.97548!10709-109H7;0.187453!10710-109H8;0.461926!10703-109H1;0.392527!10719-109I8;0.284649!10642-109A3;0.289705!10177-103C6;0.113109!10164-103B2;0.521126!10173-103C2;0.554232!10166-103B4;0.206961!10083-102B2;0.312555!10188-103D8;0.207643!10552-107I3;0.657078!10553-107I4;0.698138!10013-101C4;0.600721!10536-107G5;0.733199!10618-108G6;0.540486!10423-106C9;0.748355!10785-110H2;0.956706!12238-129G6;0.831875!12239-129G7;0.455582!12240-129G8;0.782026!10416-106C2;0.420904!10801-110I9;0.407129!10766-110F1;0.601272!10824-111C5;0.207818!10825-111C6;0.892011!10826-111C7;0.996631!10454-106G4;0.956108!10409-106B4;0.960598!10638-108I8;0.137261!10636-108I6;0.564967!10513-107D9;0.727645!10420-106C6;0.562326!10082-102B1;0.486797!10014-101C5;0.489661!10070-101I7;0.461368!10452-106G2;0.366488!10453-106G3;0.887032!10449-106F8;0.918294!10042-101F6;0.95365!10069-101I6;0.318934!10193-103E4;0.686933!10631-108I1;0.438211!10438-106E6;0.618447!10488-107B2;0.940382!10196-103E7;0.633761!10071-101I8;0.450039!10071-101I8;0.24309!10041-101F5;0.134844!10451-106G1;0.901868!10450-106F9;0.854836!10604-108F1;0.969713!10605-108F2;0.654139!10606-108F3;0.677164!10603-108E9;0.4444!10497-107C2;0.680306!10448-106F7;0.71891!10643-109A4;0.874988!10426-106D3;0.86243!10431-106D8;0.638606!10197-103E8;0.344305!10443-106F2;0.503435!10815-111B5;0.347217!10816-111B6;0.424721!10817-111B7;0.472557!10015-101C6;0.354493!10410-106B5;0.997857!10054-101G9;0.0301685!10758-110E2;0.466051!10711-109H9;0.231113!10040-101F4;0.306407!10470-106I2;0.470058!10415-106C1;0.876906!10198-103E9;0.611038!10614-108G2;0.804401!10612-108F9;0.234053!10549-107H9;0.464011!10615-108G3;0.945271!10487-107B1;0.871507!10433-106E1;0.889298!10688-109F4;0.153845!10444-106F3;0.569337!10444-106F3;0.232282!10485-107A8;0.40056!10413-106B8;0.512558!10175-103C4;0.492803!10161-103A8;0.488283!12131-128D7;0.408309!10624-108H3;0.271927!10712-109I1;0.3726!10205-103F7;0.794402!10206-103F8;0.733824!10207-103F9;0.959062!10050-101G5;0.974339!10051-101G6;0.791903!10016-101C7;0.944226!10046-101G1;0.640145!10778-110G4;0.506376!10633-108I3;0.598447!10818-111B8;0.0845748!10819-111B9;0.24096!10820-111C1;0.242122!10484-107A7;0.1912!10808-111A7;0.0578472!10169-103B7;0.667189!10153-102I9;0.495803!13425-144D5;0.384627!13433-144E4;0.178333!13437-144E8;0.0922028!11904-125F5;0.097707!11905-125F6;0.461628!10039-101F3;0.392019!10791-110H8;0.483275!10017-101C8;0.540195!10045-101F9;0.849401!10509-107D5;0.141041!10839-111E2;0.871876!10692-109F8;0.811549!10079-102A7;0.62268!10078-102A6;0.974104!10721-110A1;0.431124!10569-108B2;0.830772!10570-108B3;0.508491!10571-108B4;0.318427!10647-109A8;0.875727!10752-110D5;0.854971!10782-110G8;0.213538!10726-110A6;0.554928!10018-101C9;0.436604!10086-102B5;0.830917!10182-103D2;0.0307049!10165-103B3;0.364202!10499-107C4;0.355127!10408-106B3;0.68539!10019-101D1;0.789865!10068-101I5;0.827456!10075-102A3;0.45292!10077-102A5;0.899462!10727-110A7;0.582264!10775-110G1;0.200311!10412-106B7;0.287296!12231-129F8;0.0285168!12232-129F9;0.901672!12233-129G1;0.954477!12234-129G2;0.966953!10414-106B9;0.921826!10170-103B8;0.436082!10183-103D3;0.537148!10150-102I6;0.414736!10174-103C3;0.443166!10155-103A2;0.390949!10038-101F2;0.405601!10838-111E1;0.310843!10759-110E3;0.0829853!10514-107E1;0.598171!10465-106H6;0.523051!10691-109F7;0.549272!10843-111E6;0.817468!10844-111E7;0.0332955!11747-123G1;0.431039!11748-123G2;0.947578!11749-123G3;0.678251!11750-123G4;0.575167!11751-123G5;0.608133!11840-124H4;0.599029!11752-123G6;0.2808!11753-123G7;0.665879!11754-123G8;0.676639!11755-123G9;0.677528!11756-123H1;0.661977!11833-124G6;0.327026!11760-123H5;0.708879!11836-124G9;0.535667!11758-123H3;0.817354!11835-124G8;0.676401!11762-123H7;0.62748!11838-124H2;0.96932!11757-123H2;0.6304!11759-123H4;0.486912!11761-123H6;0.838954!11842-124H6;0.669345!11837-124H1;0.72242!10568-108B1;0.847208!13230-141I8;0.568078!13231-141I9;0.938067!10696-109G3;0.895852!10493-107B7;0.935304!10494-107B8;0.233445!10850-111F4;0.753128!10851-111F5;0.415041!10852-111F6;0.993273!10853-111F7;0.790362!10854-111F8;0.410764!10855-111F9;0.753247!10856-111G1;0.976978!10847-111F1;0.242101!10846-111E9;0.860747!10848-111F2;0.953853!10845-111E8;0.760748!10857-111G2;0.956963!10858-111G3;0.813799!10156-103A3;0.843803!11901-125F2;0.43111!11902-125F3;0.726082!11903-125F4;0.608105!10689-109F5;0.653196!10648-109A9;0.736609!10784-110H1;0.889928!10744-110C6;0.779364!10772-110F7;0.827332!10474-106I6;0.17442!10600-108E6;0.980294!10684-109E9;0.681406!12226-129F3;0.874968!12227-129F4;0.417342!10508-107D4;0.311182!10539-107G8;0.0565045!10607-108F4;0.195152!10555-107I6;0.230378!10774-110F9;0.162419!10637-108I7;0.595132!10663-109C6;0.351123!10728-110A8;0.0487094!10729-110A9;0.844493!10430-106D7;0.999744!10730-110B1;0.993961!10813-111B3;0.557809!10812-111B2;0.34443!10037-101F1;0.771096!10172-103C1;0.508509!10163-103B1;0.586454!10076-102A4;0.432676!10073-102A1;0.456982!10036-101E9;0.0983724!10195-103E6;0.500663!10277-104E7;0.485658!10434-106E2;0.271949!10550-107I1;0.565655!10545-107H5;0.684285!10544-107H4;0.320389!10704-109H2;0.457083!10510-107D6;0.659118!10558-107I9;0.23138!10020-101D2;0.466386!10732-110B3;0.647227!10049-101G4;0.951822!10698-109G5;0.936856!10437-106E5;0.315996!10417-106C3;0.946898!10035-101E8;0.141001!10171-103B9;0.489976!10157-103A4;0.430114!10034-101E7;0.402406!10072-101I9;0.455784!10199-103F1;0.0710651!10200-103F2;0.876065!10697-109G4;0.930711!10723-110A3;0.660163!10179-103C8;0.177428!10160-103A7;0.241194!10180-103C9;0.280306!10162-103A9;0.740222!10021-101D3;0.775402!10840-111E3;0.71274!10706-109H4;0.752878!10033-101E6;0.518976!10032-101E5;0.328466!10490-107B4;0.430037!10439-106E7;0.903809!10022-101D4;0.748376!10176-103C5;0.744848!10469-106I1;0.604629!10067-101I4;0.506304!10411-106B6;0.235857!10471-106I3;0.0476937!10030-101E3;0.0826695!10475-106I7;0.474785!10787-110H4;0.0253797!10477-106I9;0.540085!10695-109G2;0.124098!11771-123I7;0.335696!11772-123I8;0.933091!11773-123I9;0.947977!10093-102C3;0.751288!10442-106F1;0.563747!10442-106F1;0.95634!10201-103F3;0.66863!10639-108I9;0.862411!11843-124H7;0.764802!11841-124H5;0.672773!10693-109F9;0.981734!10436-106E4;0.960559!10483-107A6;0.35256!10282-104F3;0.978592!10023-101D5;0.636593!10066-101I3;0.519614!10065-101I2;0.504339!10800-110I8;0.359935!10610-108F7;0.611486!10841-111E4;0.0246261!10541-107H1;0.195526!10842-111E5;0.872676!10562-108A4;0.216904!10024-101D6;0.565243!10064-101I1;0.541112!10609-108F6;0.298103!10048-101G3;0.692446!10781-110G7;0.950418!10181-103D1;0.550093!10159-103A6;0.153648!10056-101H2;0.256511!10737-110B8;0.156999!10025-101D7;0.623272!10044-101F8;0.781683!10424-106D1;0.688202!10463-106H4;0.470596!10616-108G4;0.85827!10486-107A9;0.902737!10062-101H8;0.636945!10202-103F4;0.55167!10158-103A5;0.825877!10441-106E9;0.244029!10031-101E4;0.570837!10063-101H9;0.45078!10063-101H9;0.0707693!11763-123H8;0.313417!11765-123I1;0.891417!11768-123I4;0.392715!10807-111A6;0.903574!10790-110H7;0.933871!10798-110I6;0.379086!10786-110H3;0.406174!10591-108D6;0.16914!10593-108D8;0.180948!10590-108D5;0.0950849!10026-101D8;0.775141!10096-102C6;0.343859!10168-103B6;0.307916!10154-103A1;0.318052!10209-103G2;0.38561!10061-101H7;0.858698!10027-101D9;0.469809!10043-101F7;0.942252!10783-110G9;0.744017!10028-101E1;0.818566!10060-101H6;0.766001!10203-103F5;0.7207!10059-101H5;0.600172!10047-101G2;0.738092!10029-101E2;0.479217!10058-101H4;0.836047!10418-106C4;0.574441!10492-107B6;0.247499!10694-109G1;0.682573!10797-110I5;0.178374!10057-101H3;0.327021!10100-102D1;0.684714!10055-101H1;0.772092!10204-103F6;0.422617!10191-103E2;0.871107!10563-108A5;0.764416
|name=GAGAGACAAAGG,motif729,CNhs11084,T:388.0(13.58%),B:5182.0(7.47%),P:1e-28
|name=GAGAGACAAAGG,motif729,CNhs11084,T:388.0(13.58%),B:5182.0(7.47%),P:1e-28
|tomtom_result=Trl#MA0205.1;0;0.000266768;0.126981;0.253898;10;GAGAGACAAAGG;GAGAGAGCAA;-!PPARG::RXRA#MA0065.2;0;0.00166283;0.791507;0.746659;12;GAGAGACAAAGG;GTAGGGCAAAGGTCA;+!SOX10#MA0442.1;-5;0.00235351;1.12027;0.746659;6;GAGAGACAAAGG;ACAAAG;-!Klf4#MA0039.1;-2;0.00434586;2.06863;0.951274;10;GAGAGACAAAGG;TAAAGGAAGG;+!Gata1#MA0035.2;-1;0.00499745;2.37879;0.951274;11;GAGAGACAAAGG;ACAGATAAGAA;+!Sox2#MA0143.1;3;0.00632006;3.00835;0.999747;12;GAGAGACAAAGG;TTTGCATAACAAAGG;-!br_Z1#MA0010.1;2;0.012223;5.81816;0.999747;12;GAGAGACAAAGG;GTAATAAACAAATC;+!NR2F1#MA0017.1;-1;0.0148545;7.07074;0.999747;11;GAGAGACAAAGG;AGGTTCAAAGGTCA;-!IRF2#MA0051.1;1;0.0185626;8.83581;0.999747;12;GAGAGACAAAGG;GGAAAGCGAAACCAAAAC;+!PPARG::RXRA#MA0065.2;2;0.0190217;9.05432;0.999747;12;GAGAGACAAAGG;CTAGGGGTCAAAGGTCATCG;+!IRF1#MA0050.1;0;0.0199963;9.51823;0.999747;12;GAGAGACAAAGG;GAAAGCGAAACC;+
}}
}}

Latest revision as of 14:52, 7 September 2012

Full Name: GAGAGACAAAGG,motif729,CNhs11084,T:388.0(13.58%),B:5182.0(7.47%),P:1e-28

Motif matrix
POACGT
161.69237.248282.8526.208
2339.50.38829.87618.236
348.545.396287.8966.208
4356.1840.38816.29615.132
516.68434.92316.60819.788
6332.5160.38833.36821.728
767.9195.552100.49224.056
8350.75213.19223.6680.388
9329.0240.38858.20.388
10291.77618.23643.06834.92
1120.5640.388338.33628.712
120.38849.276318.93619.4

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Trl#MA0205.100.0002667680.1269810.25389810GAGAGACAAAGGGAGAGAGCAA-
PPARG::RXRA#MA0065.200.001662830.7915070.74665912GAGAGACAAAGGGTAGGGCAAAGGTCA+
SOX10#MA0442.1-50.002353511.120270.7466596GAGAGACAAAGGACAAAG-
Klf4#MA0039.1-20.004345862.068630.95127410GAGAGACAAAGGTAAAGGAAGG+
Gata1#MA0035.2-10.004997452.378790.95127411GAGAGACAAAGGACAGATAAGAA+
Sox2#MA0143.130.006320063.008350.99974712GAGAGACAAAGGTTTGCATAACAAAGG-
br_Z1#MA0010.120.0122235.818160.99974712GAGAGACAAAGGGTAATAAACAAATC+
NR2F1#MA0017.1-10.01485457.070740.99974711GAGAGACAAAGGAGGTTCAAAGGTCA-
IRF2#MA0051.110.01856268.835810.99974712GAGAGACAAAGGGGAAAGCGAAACCAAAAC+
PPARG::RXRA#MA0065.220.01902179.054320.99974712GAGAGACAAAGGCTAGGGGTCAAAGGTCATCG+
IRF1#MA0050.100.01999639.518230.99974712GAGAGACAAAGGGAAAGCGAAACC+
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