MCL coexpression mm9:4: Difference between revisions
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{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9 | ||
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.0527413783866199,0,0,0,0,0.0686313343811508,0.0363974770700186,0,0,0,0,0,0,0.0354470656487682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.584794686509832,0,0.0811390825906054,0.217379731275612,0.352797211742503,0.503176914463702,0.516365263842763,0.545396436083256,0.624601539608806,0.599016397045127,0.665556852290432,0.61475511774181,0.685605041090869,0.771501487324123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|gostat_on_MCL_coexpression=GO:0002376;immune system process;1.72372790811245e-07;12445,17087,16822,15064,16797,16408,12525,16818,56792,319583,384059,12504,19374,11634,16913,77799,12526,20400,12394,12480,19373,21838,77647,19885!GO:0045321;leukocyte activation;0.00053822161229644;12445,16822,77799,16797,16408,12525,12480,319583,19373,12504,19885,19374!GO:0001775;cell activation;0.000733316042884668;12445,16822,77799,16797,16408,12525,12480,319583,19373,12504,19885,19374!GO:0042110;T cell activation;0.000733316042884668;12445,77799,16408,12525,12480,319583,12504,19374,19885!GO:0050848;regulation of calcium-mediated signaling;0.00124903661719122;12504,16408,12525,77647!GO:0050850;positive regulation of calcium-mediated signaling;0.00124903661719122;12504,16408,12525,77647!GO:0065007;biological regulation;0.00148389979663491;74123,18602,15257,12525,18436,223864,68393,242705,12504,22779,20230,17863,12180,21406,12211,22780,11634,71148,19401,227720,17122,66610,219140,12445,60599,12290,104418,16408,16818,20467,17974,58208,72068,21414,17758,319583,98660,17355,30927,236193,20848,18124,12394,12847,23872,110197,12480,331004,14885,15289,78829,21838,67141,16534,77647,19885,382864,116848,74145,14248!GO:0043283;biopolymer metabolic process;0.00183290260742759;74123,18602,216766,223864,66177,12504,72774,22779,20230,12180,21406,22780,11634,70762,14375,19401,16818,20467,319583,17355,319651,19374,20848,26972,18124,23872,233040,19373,14885,78829,74145,102414,67921,15257,13848,242705,30843,17863,12211,12402,51789,76843,228019,16913,71148,68275,17122,72068,58208,21414,78610,21673,30927,236193,30838,12394,192193,15289,67141,19885,116848,14248,170737!GO:0007242;intracellular signaling cascade;0.0019202607232972;219140,16822,16408,70719,104418,12525,16818,56792,74734,17974,20491,223864,12504,68203,20848,77799,20400,110197,70762,140580,77647,242687!GO:0046649;lymphocyte activation;0.0019202607232972;12445,77799,16408,12525,12480,319583,12504,19373,19374,19885!GO:0006955;immune response;0.0019202607232972;11634,16913,17087,77799,12526,20400,15064,16797,12525,16818,12480,319583,384059,12504,21838,77647!GO:0033151;V(D)J recombination;0.0019202607232972;319583,19373,19374!GO:0001772;immunological synapse;0.00370428316769851;12503,16797,16408,77647!GO:0019722;calcium-mediated signaling;0.00421694910926934;12504,16408,12525,77647!GO:0006259;DNA metabolic process;0.00477282167889403;18602,78610,319583,72774,20230,12180,19374,21673,76843,228019,26972,15289,14885,19373,14375,68275!GO:0050856;regulation of T cell receptor signaling pathway;0.00592021128403217;21838,77647,16818!GO:0003677;DNA binding;0.00719234937397419;74123,242705,72774,22779,20230,17863,12180,21406,22780,11634,71148,14375,68275,19401,17122,223970,319583,21414,17355,19374,21673,30927,20848,26972,23872,12394,18124,15289,14885,19373,78829,19885,116848!GO:0006811;ion transport;0.00788334629768725;12290,12819,18436,98660,13521,17863,20272,16796,58802,11931,331004,73834,319734,16534,382864,231252,16439!GO:0050854;regulation of antigen receptor-mediated signaling pathway;0.0096536771458536;21838,77647,16818!GO:0043170;macromolecule metabolic process;0.00967627824759834;74123,18602,53857,216766,223864,66177,12504,72774,22779,20230,260302,12180,21406,22780,11634,12335,70762,14375,19401,76051,16818,20467,17758,319583,17355,319651,19374,20848,26972,18124,23872,233040,19373,14885,78829,74145,102414,67921,15257,13848,242705,30843,72552,17863,12211,12402,51789,76843,228019,16913,71148,68275,17122,11489,72068,58208,78610,21414,71924,21673,30927,236193,30838,13482,12394,12480,192193,15289,67141,77647,19885,116848,170737,14248!GO:0050789;regulation of biological process;0.0106360760118827;74123,18602,15257,12525,18436,223864,242705,12504,22779,20230,17863,12180,21406,12211,22780,11634,71148,19401,227720,17122,66610,219140,12445,60599,16408,16818,20467,58208,72068,17974,21414,319583,17758,98660,17355,30927,236193,20848,18124,12394,23872,12480,14885,15289,78829,21838,67141,16534,77647,19885,382864,116848,14248!GO:0030098;lymphocyte differentiation;0.0163083104488789;319583,19373,12504,12525,19885,19374!GO:0030217;T cell differentiation;0.017737048360003;319583,12504,12525,19885,19374!GO:0003700;transcription factor activity;0.0184658084227821;74123,21414,17355,242705,22779,20230,17863,22780,30927,20848,23872,12394,18124,14885,78829,19885,17122,19401!GO:0006355;regulation of transcription, DNA-dependent;0.0184658084227821;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0009897;external side of plasma membrane;0.0184658084227821;12504,12526,21838,16408,12525,16161,12480!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0209148917134532;74123,18602,15257,216766,242705,72774,22779,20230,17863,12180,21406,22780,228019,11634,76843,71148,14375,68275,19401,17122,20467,58208,72068,78610,21414,319583,17355,19374,30927,21673,236193,20848,26972,18124,12394,23872,110639,73834,15289,14885,19373,78829,19885,116848,14248!GO:0009986;cell surface;0.0213056488532302;12504,12526,21838,16408,12525,50905,16161,12480!GO:0006351;transcription, DNA-dependent;0.0214468407188759;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0032774;RNA biosynthetic process;0.0217799260828186;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0050794;regulation of cellular process;0.0257014293649693;74123,18602,15257,12525,223864,242705,12504,22779,20230,17863,12180,21406,12211,22780,11634,71148,19401,227720,17122,66610,219140,12445,60599,16408,20467,58208,72068,17974,21414,319583,17758,17355,30927,236193,20848,18124,12394,23872,12480,14885,15289,78829,67141,77647,19885,116848,14248!GO:0050852;T cell receptor signaling pathway;0.0257014293649693;21838,77647,16818!GO:0019222;regulation of metabolic process;0.0257014293649693;74123,18602,15257,242705,12504,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,17758,21414,17355,30927,236193,20848,18124,23872,12394,12480,15289,14885,78829,77647,19885,116848,14248!GO:0006310;DNA recombination;0.0285206682108839;319583,19373,14375,26972,19374!GO:0022891;substrate-specific transmembrane transporter activity;0.0304153285138801;58246,12290,18436,11982,98660,13521,20272,58802,11931,224674,331004,73834,319734,16534,231252,16439!GO:0045449;regulation of transcription;0.0323361785238724;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0030097;hemopoiesis;0.0338054916371632;319583,19373,12504,12394,12525,19885,19374,56792!GO:0019932;second-messenger-mediated signaling;0.0401640281944902;12504,16408,104418,12525,77647,110197!GO:0048611;embryonic ectodermal gut development;0.0401640281944902;21414,74123!GO:0048613;embryonic ectodermal gut morphogenesis;0.0401640281944902;21414,74123!GO:0000726;non-recombinational repair;0.0401640281944902;319583,14375!GO:0006303;double-strand break repair via nonhomologous end joining;0.0401640281944902;319583,14375!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0401640281944902;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0002521;leukocyte differentiation;0.0428077624944378;319583,19373,12504,12525,19885,19374!GO:0010468;regulation of gene expression;0.0431517318134284;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,12480,15289,14885,78829,19885,116848,14248!GO:0031323;regulation of cellular metabolic process;0.043195725123524;74123,18602,15257,242705,12504,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,236193,20848,23872,12394,18124,12480,15289,14885,78829,19885,116848,14248!GO:0033077;T cell differentiation in the thymus;0.0456656359552126;319583,19885,19374!GO:0015075;ion transmembrane transporter activity;0.0456656359552126;11931,12290,331004,18436,11982,73834,98660,319734,13521,20272,16534,231252,16439,58802!GO:0006350;transcription;0.0456656359552126;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0043687;post-translational protein modification;0.0456656359552126;67921,15257,16818,13848,223864,66177,12504,30843,319651,20230,12211,51789,12402,76843,228019,30838,70762,233040,67141,19885,74145,170737,102414!GO:0048534;hemopoietic or lymphoid organ development;0.0484454355521559;319583,19373,12504,12394,12525,19885,19374,56792! | |gostat_on_MCL_coexpression=GO:0002376;immune system process;1.72372790811245e-07;12445,17087,16822,15064,16797,16408,12525,16818,56792,319583,384059,12504,19374,11634,16913,77799,12526,20400,12394,12480,19373,21838,77647,19885!GO:0045321;leukocyte activation;0.00053822161229644;12445,16822,77799,16797,16408,12525,12480,319583,19373,12504,19885,19374!GO:0001775;cell activation;0.000733316042884668;12445,16822,77799,16797,16408,12525,12480,319583,19373,12504,19885,19374!GO:0042110;T cell activation;0.000733316042884668;12445,77799,16408,12525,12480,319583,12504,19374,19885!GO:0050848;regulation of calcium-mediated signaling;0.00124903661719122;12504,16408,12525,77647!GO:0050850;positive regulation of calcium-mediated signaling;0.00124903661719122;12504,16408,12525,77647!GO:0065007;biological regulation;0.00148389979663491;74123,18602,15257,12525,18436,223864,68393,242705,12504,22779,20230,17863,12180,21406,12211,22780,11634,71148,19401,227720,17122,66610,219140,12445,60599,12290,104418,16408,16818,20467,17974,58208,72068,21414,17758,319583,98660,17355,30927,236193,20848,18124,12394,12847,23872,110197,12480,331004,14885,15289,78829,21838,67141,16534,77647,19885,382864,116848,74145,14248!GO:0043283;biopolymer metabolic process;0.00183290260742759;74123,18602,216766,223864,66177,12504,72774,22779,20230,12180,21406,22780,11634,70762,14375,19401,16818,20467,319583,17355,319651,19374,20848,26972,18124,23872,233040,19373,14885,78829,74145,102414,67921,15257,13848,242705,30843,17863,12211,12402,51789,76843,228019,16913,71148,68275,17122,72068,58208,21414,78610,21673,30927,236193,30838,12394,192193,15289,67141,19885,116848,14248,170737!GO:0007242;intracellular signaling cascade;0.0019202607232972;219140,16822,16408,70719,104418,12525,16818,56792,74734,17974,20491,223864,12504,68203,20848,77799,20400,110197,70762,140580,77647,242687!GO:0046649;lymphocyte activation;0.0019202607232972;12445,77799,16408,12525,12480,319583,12504,19373,19374,19885!GO:0006955;immune response;0.0019202607232972;11634,16913,17087,77799,12526,20400,15064,16797,12525,16818,12480,319583,384059,12504,21838,77647!GO:0033151;V(D)J recombination;0.0019202607232972;319583,19373,19374!GO:0001772;immunological synapse;0.00370428316769851;12503,16797,16408,77647!GO:0019722;calcium-mediated signaling;0.00421694910926934;12504,16408,12525,77647!GO:0006259;DNA metabolic process;0.00477282167889403;18602,78610,319583,72774,20230,12180,19374,21673,76843,228019,26972,15289,14885,19373,14375,68275!GO:0050856;regulation of T cell receptor signaling pathway;0.00592021128403217;21838,77647,16818!GO:0003677;DNA binding;0.00719234937397419;74123,242705,72774,22779,20230,17863,12180,21406,22780,11634,71148,14375,68275,19401,17122,223970,319583,21414,17355,19374,21673,30927,20848,26972,23872,12394,18124,15289,14885,19373,78829,19885,116848!GO:0006811;ion transport;0.00788334629768725;12290,12819,18436,98660,13521,17863,20272,16796,58802,11931,331004,73834,319734,16534,382864,231252,16439!GO:0050854;regulation of antigen receptor-mediated signaling pathway;0.0096536771458536;21838,77647,16818!GO:0043170;macromolecule metabolic process;0.00967627824759834;74123,18602,53857,216766,223864,66177,12504,72774,22779,20230,260302,12180,21406,22780,11634,12335,70762,14375,19401,76051,16818,20467,17758,319583,17355,319651,19374,20848,26972,18124,23872,233040,19373,14885,78829,74145,102414,67921,15257,13848,242705,30843,72552,17863,12211,12402,51789,76843,228019,16913,71148,68275,17122,11489,72068,58208,78610,21414,71924,21673,30927,236193,30838,13482,12394,12480,192193,15289,67141,77647,19885,116848,170737,14248!GO:0050789;regulation of biological process;0.0106360760118827;74123,18602,15257,12525,18436,223864,242705,12504,22779,20230,17863,12180,21406,12211,22780,11634,71148,19401,227720,17122,66610,219140,12445,60599,16408,16818,20467,58208,72068,17974,21414,319583,17758,98660,17355,30927,236193,20848,18124,12394,23872,12480,14885,15289,78829,21838,67141,16534,77647,19885,382864,116848,14248!GO:0030098;lymphocyte differentiation;0.0163083104488789;319583,19373,12504,12525,19885,19374!GO:0030217;T cell differentiation;0.017737048360003;319583,12504,12525,19885,19374!GO:0003700;transcription factor activity;0.0184658084227821;74123,21414,17355,242705,22779,20230,17863,22780,30927,20848,23872,12394,18124,14885,78829,19885,17122,19401!GO:0006355;regulation of transcription, DNA-dependent;0.0184658084227821;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0009897;external side of plasma membrane;0.0184658084227821;12504,12526,21838,16408,12525,16161,12480!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0209148917134532;74123,18602,15257,216766,242705,72774,22779,20230,17863,12180,21406,22780,228019,11634,76843,71148,14375,68275,19401,17122,20467,58208,72068,78610,21414,319583,17355,19374,30927,21673,236193,20848,26972,18124,12394,23872,110639,73834,15289,14885,19373,78829,19885,116848,14248!GO:0009986;cell surface;0.0213056488532302;12504,12526,21838,16408,12525,50905,16161,12480!GO:0006351;transcription, DNA-dependent;0.0214468407188759;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0032774;RNA biosynthetic process;0.0217799260828186;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0050794;regulation of cellular process;0.0257014293649693;74123,18602,15257,12525,223864,242705,12504,22779,20230,17863,12180,21406,12211,22780,11634,71148,19401,227720,17122,66610,219140,12445,60599,16408,20467,58208,72068,17974,21414,319583,17758,17355,30927,236193,20848,18124,12394,23872,12480,14885,15289,78829,67141,77647,19885,116848,14248!GO:0050852;T cell receptor signaling pathway;0.0257014293649693;21838,77647,16818!GO:0019222;regulation of metabolic process;0.0257014293649693;74123,18602,15257,242705,12504,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,17758,21414,17355,30927,236193,20848,18124,23872,12394,12480,15289,14885,78829,77647,19885,116848,14248!GO:0006310;DNA recombination;0.0285206682108839;319583,19373,14375,26972,19374!GO:0022891;substrate-specific transmembrane transporter activity;0.0304153285138801;58246,12290,18436,11982,98660,13521,20272,58802,11931,224674,331004,73834,319734,16534,231252,16439!GO:0045449;regulation of transcription;0.0323361785238724;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0030097;hemopoiesis;0.0338054916371632;319583,19373,12504,12394,12525,19885,19374,56792!GO:0019932;second-messenger-mediated signaling;0.0401640281944902;12504,16408,104418,12525,77647,110197!GO:0048611;embryonic ectodermal gut development;0.0401640281944902;21414,74123!GO:0048613;embryonic ectodermal gut morphogenesis;0.0401640281944902;21414,74123!GO:0000726;non-recombinational repair;0.0401640281944902;319583,14375!GO:0006303;double-strand break repair via nonhomologous end joining;0.0401640281944902;319583,14375!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0401640281944902;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0002521;leukocyte differentiation;0.0428077624944378;319583,19373,12504,12525,19885,19374!GO:0010468;regulation of gene expression;0.0431517318134284;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,12480,15289,14885,78829,19885,116848,14248!GO:0031323;regulation of cellular metabolic process;0.043195725123524;74123,18602,15257,242705,12504,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,236193,20848,23872,12394,18124,12480,15289,14885,78829,19885,116848,14248!GO:0033077;T cell differentiation in the thymus;0.0456656359552126;319583,19885,19374!GO:0015075;ion transmembrane transporter activity;0.0456656359552126;11931,12290,331004,18436,11982,73834,98660,319734,13521,20272,16534,231252,16439,58802!GO:0006350;transcription;0.0456656359552126;74123,18602,15257,242705,22779,20230,17863,12180,21406,22780,11634,71148,19401,17122,58208,72068,20467,21414,17355,30927,20848,236193,23872,12394,18124,15289,14885,78829,19885,116848,14248!GO:0043687;post-translational protein modification;0.0456656359552126;67921,15257,16818,13848,223864,66177,12504,30843,319651,20230,12211,51789,12402,76843,228019,30838,70762,233040,67141,19885,74145,170737,102414!GO:0048534;hemopoietic or lymphoid organ development;0.0484454355521559;319583,19373,12504,12394,12525,19885,19374,56792! | ||
}} | }} | ||
Revision as of 12:35, 11 October 2012
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0002376 | immune system process | 1.72372790811245e-07 |
| GO:0045321 | leukocyte activation | 0.00053822161229644 |
| GO:0001775 | cell activation | 0.000733316042884668 |
| GO:0042110 | T cell activation | 0.000733316042884668 |
| GO:0050848 | regulation of calcium-mediated signaling | 0.00124903661719122 |
| GO:0050850 | positive regulation of calcium-mediated signaling | 0.00124903661719122 |
| GO:0065007 | biological regulation | 0.00148389979663491 |
| GO:0043283 | biopolymer metabolic process | 0.00183290260742759 |
| GO:0007242 | intracellular signaling cascade | 0.0019202607232972 |
| GO:0046649 | lymphocyte activation | 0.0019202607232972 |
| GO:0006955 | immune response | 0.0019202607232972 |
| GO:0033151 | V(D)J recombination | 0.0019202607232972 |
| GO:0001772 | immunological synapse | 0.00370428316769851 |
| GO:0019722 | calcium-mediated signaling | 0.00421694910926934 |
| GO:0006259 | DNA metabolic process | 0.00477282167889403 |
| GO:0050856 | regulation of T cell receptor signaling pathway | 0.00592021128403217 |
| GO:0003677 | DNA binding | 0.00719234937397419 |
| GO:0006811 | ion transport | 0.00788334629768725 |
| GO:0050854 | regulation of antigen receptor-mediated signaling pathway | 0.0096536771458536 |
| GO:0043170 | macromolecule metabolic process | 0.00967627824759834 |
| GO:0050789 | regulation of biological process | 0.0106360760118827 |
| GO:0030098 | lymphocyte differentiation | 0.0163083104488789 |
| GO:0030217 | T cell differentiation | 0.017737048360003 |
| GO:0003700 | transcription factor activity | 0.0184658084227821 |
| GO:0006355 | regulation of transcription, DNA-dependent | 0.0184658084227821 |
| GO:0009897 | external side of plasma membrane | 0.0184658084227821 |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 0.0209148917134532 |
| GO:0009986 | cell surface | 0.0213056488532302 |
| GO:0006351 | transcription, DNA-dependent | 0.0214468407188759 |
| GO:0032774 | RNA biosynthetic process | 0.0217799260828186 |
| GO:0050794 | regulation of cellular process | 0.0257014293649693 |
| GO:0050852 | T cell receptor signaling pathway | 0.0257014293649693 |
| GO:0019222 | regulation of metabolic process | 0.0257014293649693 |
| GO:0006310 | DNA recombination | 0.0285206682108839 |
| GO:0022891 | substrate-specific transmembrane transporter activity | 0.0304153285138801 |
| GO:0045449 | regulation of transcription | 0.0323361785238724 |
| GO:0030097 | hemopoiesis | 0.0338054916371632 |
| GO:0019932 | second-messenger-mediated signaling | 0.0401640281944902 |
| GO:0048611 | embryonic ectodermal gut development | 0.0401640281944902 |
| GO:0048613 | embryonic ectodermal gut morphogenesis | 0.0401640281944902 |
| GO:0000726 | non-recombinational repair | 0.0401640281944902 |
| GO:0006303 | double-strand break repair via nonhomologous end joining | 0.0401640281944902 |
| GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 0.0401640281944902 |
| GO:0002521 | leukocyte differentiation | 0.0428077624944378 |
| GO:0010468 | regulation of gene expression | 0.0431517318134284 |
| GO:0031323 | regulation of cellular metabolic process | 0.043195725123524 |
| GO:0033077 | T cell differentiation in the thymus | 0.0456656359552126 |
| GO:0015075 | ion transmembrane transporter activity | 0.0456656359552126 |
| GO:0006350 | transcription | 0.0456656359552126 |
| GO:0043687 | post-translational protein modification | 0.0456656359552126 |
| GO:0048534 | hemopoietic or lymphoid organ development | 0.0484454355521559 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
