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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0.130004032382152,0.162862766291676,0.114765798731257,0.176350522035494,0.671482385458307,0.788131454053247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551435207882782,0.517735831201298,0.332128066466673,0.498835523242076,0.648119835652302,0.996997386231447,0.701782236767021,0.636082264480704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16338070954688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098801861608942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52892377998733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0007339;binding of sperm to zona pellucida;0.0312114896282304;215384!GO:0035036;sperm-egg recognition;0.0312114896282304;215384!GO:0009988;cell-cell recognition;0.0312114896282304;215384!GO:0004623;phospholipase A2 activity;0.0312114896282304;18780!GO:0007338;single fertilization;0.0382036845473835;215384!GO:0008037;cell recognition;0.0382036845473835;215384!GO:0004620;phospholipase activity;0.0382036845473835;18780!GO:0009566;fertilization;0.0382036845473835;215384!GO:0016298;lipase activity;0.0429529941524457;18780!GO:0001558;regulation of cell growth;0.047595227214805;18780!GO:0016042;lipid catabolic process;0.047595227214805;18780!GO:0016049;cell growth;0.047595227214805;18780!GO:0004091;carboxylesterase activity;0.047595227214805;18780!GO:0008361;regulation of cell size;0.047595227214805;18780!GO:0006644;phospholipid metabolic process;0.0481467517958884;18780!
|gostat_on_MCL_coexpression=GO:0007339;binding of sperm to zona pellucida;0.0312114896282304;215384!GO:0035036;sperm-egg recognition;0.0312114896282304;215384!GO:0009988;cell-cell recognition;0.0312114896282304;215384!GO:0004623;phospholipase A2 activity;0.0312114896282304;18780!GO:0007338;single fertilization;0.0382036845473835;215384!GO:0008037;cell recognition;0.0382036845473835;215384!GO:0004620;phospholipase activity;0.0382036845473835;18780!GO:0009566;fertilization;0.0382036845473835;215384!GO:0016298;lipase activity;0.0429529941524457;18780!GO:0001558;regulation of cell growth;0.047595227214805;18780!GO:0016042;lipid catabolic process;0.047595227214805;18780!GO:0016049;cell growth;0.047595227214805;18780!GO:0004091;carboxylesterase activity;0.047595227214805;18780!GO:0008361;regulation of cell size;0.047595227214805;18780!GO:0006644;phospholipid metabolic process;0.0481467517958884;18780!
}}
}}

Revision as of 12:42, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:33790939..33790943,+p@chr15:33790939..33790943
+
Mm9::chr4:138387772..138387783,+p1@Pla2g2a
Mm9::chr4:138388571..138388598,+p@chr4:138388571..138388598
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Mm9::chr4:138388796..138388811,+p3@ENSMUST00000147728
Mm9::chr4:138388841..138388850,+p5@ENSMUST00000147728
Mm9::chr4:138388852..138388863,+p4@ENSMUST00000147728
Mm9::chr4:138388869..138388884,+p2@ENSMUST00000147728
Mm9::chr4:138388916..138388925,+p7@ENSMUST00000147728
Mm9::chr4:138389179..138389192,+p1@ENSMUST00000147728
Mm9::chr4:138390835..138390853,+p@chr4:138390835..138390853
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Mm9::chr4:138390983..138390988,+p@chr4:138390983..138390988
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Mm9::chr6:56075077..56075082,+p@chr6:56075077..56075082
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Mm9::chr7:134194033..134194045,+p@chr7:134194033..134194045
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Mm9::chr7:134195225..134195237,+p@chr7:134195225..134195237
+
Mm9::chr7:28876815..28876836,+p@chr7:28876815..28876836
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007339binding of sperm to zona pellucida0.0312114896282304
GO:0035036sperm-egg recognition0.0312114896282304
GO:0009988cell-cell recognition0.0312114896282304
GO:0004623phospholipase A2 activity0.0312114896282304
GO:0007338single fertilization0.0382036845473835
GO:0008037cell recognition0.0382036845473835
GO:0004620phospholipase activity0.0382036845473835
GO:0009566fertilization0.0382036845473835
GO:0016298lipase activity0.0429529941524457
GO:0001558regulation of cell growth0.047595227214805
GO:0016042lipid catabolic process0.047595227214805
GO:0016049cell growth0.047595227214805
GO:0004091carboxylesterase activity0.047595227214805
GO:0008361regulation of cell size0.047595227214805
GO:0006644phospholipid metabolic process0.0481467517958884



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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