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MCL coexpression mm9:2177: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0030279;negative regulation of ossification;0.0421147232991123;58911!GO:0046851;negative regulation of bone remodeling;0.0421147232991123;58911!GO:0005178;integrin binding;0.0421147232991123;16419!GO:0030278;regulation of ossification;0.0421147232991123;58911!GO:0051241;negative regulation of multicellular organismal process;0.0421147232991123;58911!GO:0046850;regulation of bone remodeling;0.0421147232991123;58911!GO:0008305;integrin complex;0.0421147232991123;16419!GO:0016567;protein ubiquitination;0.0421147232991123;58911!GO:0032446;protein modification by small protein conjugation;0.043431557169657;58911!GO:0032403;protein complex binding;0.043431557169657;16419!GO:0007160;cell-matrix adhesion;0.0490596429226278;16419!GO:0031589;cell-substrate adhesion;0.0490596429226278;16419!GO:0043235;receptor complex;0.0490596429226278;16419!
|gostat_on_MCL_coexpression=GO:0030279;negative regulation of ossification;0.0421147232991123;58911!GO:0046851;negative regulation of bone remodeling;0.0421147232991123;58911!GO:0005178;integrin binding;0.0421147232991123;16419!GO:0030278;regulation of ossification;0.0421147232991123;58911!GO:0051241;negative regulation of multicellular organismal process;0.0421147232991123;58911!GO:0046850;regulation of bone remodeling;0.0421147232991123;58911!GO:0008305;integrin complex;0.0421147232991123;16419!GO:0016567;protein ubiquitination;0.0421147232991123;58911!GO:0032446;protein modification by small protein conjugation;0.043431557169657;58911!GO:0032403;protein complex binding;0.043431557169657;16419!GO:0007160;cell-matrix adhesion;0.0490596429226278;16419!GO:0031589;cell-substrate adhesion;0.0490596429226278;16419!GO:0043235;receptor complex;0.0490596429226278;16419!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=
}}
}}

Revision as of 18:02, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:33829710..33829753,+p1@Itgb5
Mm9::chr16:33829767..33829792,+p3@Itgb5
Mm9::chr16:33829806..33829854,+p2@Itgb5
Mm9::chr6:108135546..108135581,-p1@Sumf1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030279negative regulation of ossification0.0421147232991123
GO:0046851negative regulation of bone remodeling0.0421147232991123
GO:0005178integrin binding0.0421147232991123
GO:0030278regulation of ossification0.0421147232991123
GO:0051241negative regulation of multicellular organismal process0.0421147232991123
GO:0046850regulation of bone remodeling0.0421147232991123
GO:0008305integrin complex0.0421147232991123
GO:0016567protein ubiquitination0.0421147232991123
GO:0032446protein modification by small protein conjugation0.043431557169657
GO:0032403protein complex binding0.043431557169657
GO:0007160cell-matrix adhesion0.0490596429226278
GO:0031589cell-substrate adhesion0.0490596429226278
GO:0043235receptor complex0.0490596429226278



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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