Cytoscape test: Difference between revisions
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</style> | </style> | ||
<h1 id="firstHeading" class="firstHeading">FF:10563-108A5</h1> | <h1 id="firstHeading" class="firstHeading">FF:10563-108A5, TF to TF network</h1> | ||
<p>Mouseover nodes and edges to see attributes. Motif is an attribute of the source TF nodes (shown in orange). Promoter and z-score are attributes of the TF to TF edge.</p> | |||
<p>Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression). | |||
</p> | |||
<div id="cytoscapeweb" style="width:800px;height:600px"> | <div id="cytoscapeweb" style="width:800px;height:600px"> | ||
Cytoscape Web will replace the contents of this div with your graph. | Cytoscape Web will replace the contents of this div with your graph. | ||
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<script type="text/javascript" src="/resource_browser/rb_js/cytoscapeweb/js/min/cytoscapeweb.min.js"></script> | <script type="text/javascript" src="/resource_browser/rb_js/cytoscapeweb/js/min/cytoscapeweb.min.js"></script> | ||
<!-- Load data --> | <!-- Load data --> | ||
<script type="text/javascript"> | <script type="text/javascript"> | ||
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var lurl = "https://fantom5-collaboration.gsc.riken.jp/resource_browser/RB_SearchResults?sq="+target.data["id"]; | var lurl = "https://fantom5-collaboration.gsc.riken.jp/resource_browser/RB_SearchResults?sq="+target.data["id"]; | ||
window.location = lurl; | |||
alert(lurl); | //alert(lurl); | ||
} | } | ||
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attrName: "motif", | attrName: "motif", | ||
entries: [ { attrValue: "", value: "#0099ff" } ] | entries: [ { attrValue: "", value: "#0099ff" } ] | ||
}; | |||
var tooltipMapper = { | |||
attrName: "motif", | |||
entries: [ { attrValue: "", value: "<b>TF: ${id}</b>" } ] | |||
}; | }; | ||
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nodes: { | nodes: { | ||
label: { passthroughMapper: { attrName: "id" } }, | label: { passthroughMapper: { attrName: "id" } }, | ||
tooltipText: "<b>TF: ${id}</b><br />Motif: ${motif}", | //tooltipText: "<b>TF: ${id}</b><br />Motif: ${motif}", | ||
tooltipText: { defaultValue: "<b>TF: ${id}</b><br />Motif: ${motif}", discreteMapper: tooltipMapper }, | |||
shape: "ellipse", | shape: "ellipse", | ||
borderWidth: 1, | borderWidth: 1, | ||
Latest revision as of 11:25, 6 November 2012
FF:10563-108A5, TF to TF network
Mouseover nodes and edges to see attributes. Motif is an attribute of the source TF nodes (shown in orange). Promoter and z-score are attributes of the TF to TF edge.
Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).
Cytoscape Web will replace the contents of this div with your graph.
