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Line 37: Line 37:
});
});
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");
var data = [];
var plotdata = [];
//test
//var testtxt1 = $(oTable.fnSettings().aoColumns[1].sTitle).text();
//$('#test').text($(oTable.fnSettings().aoColumns[1].sTitle).text());
$('#test').text(oTable.fnSettings().aoColumns.length);
// chart checkbox
for (var i2=1; i2<oTable.fnSettings().aoColumns.length; i2++){
//var t1 = oTable.fnSettings().aoColumns[i2].sTitle.replace(/<(?:.|\n)*?>/gm, '').replace(/(^\s+)|(\s+$)/g, "");
//var t1 = oTable.fnSettings().aoColumns[i2].sTitle;
key2 = i2-1;
        $("#gene_exptable_chart_chkbox").append('<input type="checkbox" name="' + key2 +
                              '" checked="checked" id="id' + key2 + '"><label for="id' + key2 + '">'
                                + $(oTable.fnSettings().aoColumns[i2].sTitle).text() + '</label><br/>');
}
function collectdata(){
data = [];
for (var i2=1; i2<oTable.fnSettings().aoColumns.length; i2++){
var plots = [];
for (var i1=1; i1<$('#gene_exptable tr').length; i1++) {
    plots.push([i1,$("#gene_exptable tr")[i1].cells[i2].innerHTML]);
}
data.push({"label": oTable.fnSettings().aoColumns[i2].sTitle.replace(/<(?:.|\n)*?>/gm, '').replace(/(^\s+)|(\s+$)/g, ""), "data": plots});
}
}
function drawchart(){
plotdata = [];
$("#gene_exptable_chart_chkbox").find("input:checked").each(function () {
var key = $(this).attr("name");
plotdata.push(data[$(this).attr("name")]);
});
var plot1 = $.plot($("#gene_exptable_chart"), plotdata, {
                yaxis : { axisLabel : 'TPM' },
lines : { show : false },
points : { show : true },
                grid: { hoverable: true, clickable: true },
xaxis : { tickDecimals : 0, show: false },
                legend: { show: false }
});
//test
var data_series = plot1.getData();
$("#gene_exptable_chart_chkbox label").css("background-color", "white");
$.each(data_series , function(){
$("#gene_exptable_chart_chkbox label:contains(" + this.label + ")").css("background-color", this.color);
});
}
collectdata();
drawchart();
// re-draw chart event
$(window).resize(function() { drawchart(); });
$("th").click(function() {collectdata(); drawchart(); } );
$("#gene_exptable_paginate").click(function() {collectdata(); drawchart(); } );
$('#gene_exptable').bind('filter', function() {
setTimeout(function(){
collectdata(); drawchart();}, 1000);
} );
$('#gene_exptable_length').change(function() {collectdata(); drawchart(); } );
$("#gene_exptable_chart_chkbox").find("input").click(function() { drawchart(); });
// tooltip function start
    function showTooltip(x, y, contents) {
        $('<div id="tooltip">' + contents + '</div>').css( {
            position: 'absolute',
            display: 'none',
            top: y + 5,
            left: x + 5,
            border: '1px solid #aaa',
            padding: '2px',
            'background-color': '#fff',
            opacity: 0.80
        }).appendTo("body").fadeIn(200);
    }
    var previousPoint = null;
    $("#gene_exptable_chart").bind("plothover", function (event, pos, item) {
        $("#x").text(pos.x.toFixed(2));
        $("#y").text(pos.y.toFixed(2));
            if (item) {
                if (previousPoint != item.dataIndex) {
                    previousPoint = item.dataIndex;
                   
                    $("#tooltip").remove();
                    var x = item.datapoint[0].toFixed(0),
                        y = item.datapoint[1].toFixed(2);
                 
                    showTooltip(item.pageX, item.pageY,
                              "Gene: "+ item.series.label +"<br>TPM: "+y);
                }
            }
            else {
                $("#tooltip").remove();
                previousPoint = null;           
            }
    });
// tooltip function end
// clicking point function
    $("#gene_exptable_chart").bind("plotclick", function (event, pos, item) {
if (item){
var vdata = Math.round($('#gene_exptable').height())/item.series.data.length*item.dataIndex;
$('#gene_exptable_wrapper .dataTables_scrollBody').animate({ scrollTop: vdata-150 }, 'slow');
$("#gene_exptable_wrapper .dataTables_scrollBody tbody td").removeClass('highlight');
$('#gene_exptable_wrapper .dataTables_scrollBody tbody tr:eq(' + item.dataIndex+ ') td').addClass('highlight');
}
    });
// clicking point function end




Line 46: Line 168:
{{#gene_exptable_hg19:ACTB|{{#ask:[[Category:FFCP]][[Short description::p1@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p1@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p2@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p2@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p3@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p3@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p4@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p4@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p5@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p5@ACTB,|searchlabel=}}
{{#gene_exptable_hg19:ACTB|{{#ask:[[Category:FFCP]][[Short description::p1@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p1@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p2@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p2@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p3@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p3@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p4@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p4@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p5@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p5@ACTB,|searchlabel=}}
}}
}}
<div id="gene_exptable_chart" style="float:left;width:600px;height:300px;"></div>
<div id="gene_exptable_chart_chkbox" style="float:left;"></div>
<div style="clear:both;"></div>
<div id="test"></div>




Line 52: Line 180:
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/flot/jquery.flot.min.js"></script>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
</style>
</style>
<script type="text/javascript">
 
$(document).ready(function() {
$('.gene_list').dataTable();
} );
</script>
</html>
</html>


{{#ask:[[Category:EntrezGene]][[tax_id::10090]]
|mainlabel=EntrezGene id
|?Symbol
|?description
|format=ttable
|class=gene_list
|searchlabel=
|limit=100
}}


<!--
<!--

Revision as of 16:43, 7 November 2012

motif without matrices Swissregulon:SRY.p1 Swissregulon:HOX(A,B,D)3.p1

doubled top motif tables CNhs10855 & CNhs11062 CNhs11245 & CNhs11183 CNhs11248 & CNhs11185 CNhs11772 & CNhs12996 CNhs11781 & CNhs12997


20121107164320 yes

20241222193913

{{#gene_exptable_hg19:ACTB|p1@ACTB,11260.4259471891,7972.24710760465,10453.3195621613,11241.2336040071,7147.35486098676,10420.956008903,10023.07617912,3841.48855030856,2962.62858067077,13276.0216534305,34850.9815332149,8673.43312180062,9175.92563861144,3817.44939069968,3318.94471791508,8014.11574570516,8657.10420053641,9440.71853843757,7725.92793604889,11187.0255789731,11975.0445767289,10668.4314455067,5639.99389043034,6196.85272074976,7330.18364066135,7928.96063403041,9016.86143751919,7863.67931792444,8678.40267584052,4160.71067537379,7277.75114096542,12656.7525761769,19589.5293395811,7342.94488790224,3370.98523325183,2262.90767350229,2936.59159422714,6652.93086105932,6376.51125176063,5287.68687586245,2839.69604431072,2640.70505905274,2759.92220720031,4630.35231217402,4036.09295454017,4080.99166136263,6305.56734221432,5266.64947767157,5628.60358464761,7075.79438916329,5711.35911277283,4585.62691976956,6467.42897061896,5054.14507246136,4525.9531819829,5405.56702230544,4495.31010375284,3532.20372850784,7979.30099021706,5440.70979602101,5900.44233399935,4333.25653055289,4200.50516585395,3543.20635117829,8182.73969237156,6585.64030299006,6196.45855525698,6370.66115624998,5250.29002265459,4332.91745186708,6192.63151243673,5266.00191698619,4207.683903414,8015.02556267507,8436.98903981279,7567.20949233381,6837.5561065183,6751.80292526128,5860.53706773563,7733.82080141878,8355.69394242498,7747.88274608071,2733.22167648434,2739.43127409085,2693.43402069884,2068.36138877986,2898.86694614073,2434.65133564719,2968.75252367682,2482.44786930102,2373.04886821729,2743.57214874103,2381.17993799205,2036.76017340279,1884.42978874392,2892.22063491512,2009.78372125303,2439.02479362132,3095.74177043561,5094.67407404013,2352.18099829462,2248.40362943425,2608.72989338193,5827.43535783589,3865.52411197734,4033.46761868399,3411.85787957543,7175.29145707315,6642.52105792566,7624.32788485405,7368.04417420629,5627.97592497472,2281.3887742483,1833.18975407071,2458.67551989305,6652.7314378022,3253.92521117391,3149.00191040282,3097.46706970275,3355.44950907571,3092.64640581799,3319.92899125817,3388.24132948804,3566.09094659556,2854.6671017211,3722.61195663603,3400.29103525005,2686.00663998311,2877.65650663054,2300.68048008214,4020.37522551723,5623.15600775528,7986.2956127469,5634.83638567539,5733.80168394267,4384.64897546309,1833.92939389983,2834.64811951285,6810.09915886512,7822.39141308179,7948.96027044221,3159.28079054258,14288.7540926984,10180.9992299749,9874.67899933739,10743.9789211021,11495.1463925795,3273.76079983943,3683.07523051324,2788.53146248104,9486.73094120547,8320.18900386644,8486.54384280086,7313.38884467091,7607.62227566664,8820.28442459856,11142.3576459435,4111.92747190236,4358.84825043757,4532.11709683363,8846.13180371687,6672.90827189139,9466.1909640633,6314.61340494029,7199.7314908252,4876.03306349561,4431.31169815009,4732.72269027258,10673.9043003748,12903.3681105096,7168.13463476505,8130.8517558051,10578.6456059663,12133.8809068139,6437.77466226116,8121.95438765448,4067.47762540127,3288.8686935059,6675.56828973748,7999.74799883044,18527.3556988476,8826.0115499144,3775.30107043457,3971.40532328647,5120.93450073844,7033.12559037703,4405.44111857407,4293.70591692249,4051.2134771039,8612.98356167809,4720.18712654808,4336.15142792237,4183.9299930831,4438.66684421116,3909.1440711887,5079.56752379354,2664.87522230417,6859.52849794658,7828.71824788839,17055.5137613567,16730.8675777657,4374.88726555223,4686.06392476467,5019.01645199597,9517.47379831745,11477.9679526733,7005.75092487352,7875.14274806762,7791.43004687434,5738.28703755491,6179.5103740105,5509.37243301354,6893.69894340537,8177.76838158832,7734.83043228454,4799.49255994489,10242.8702935607,8354.54819238321,6310.02055192962,2565.64621382818,6453.71938235953,10706.2202139637,11120.8010072756,7572.73327035062,7799.17531829492,7061.41594307266,4793.81059830536,4888.89062361127,5006.09983459033,4502.82890775766,4830.43036916303,3662.54779832595,14682.7886091532,14834.4225166043,19537.8032760948,7912.82949366492,8353.58936188044,5187.98979534723,5393.02423559847,5348.51677517423,5481.16926890905,5563.11584601141,5463.39327565211,5135.72452782066,5245.19598426563,5523.04543796543,7656.88653082148,15923.0509976432,11081.2186810866,14806.7174107518,1121.7820581732,1631.49317968486,1507.69584185094,2467.33726262848,2875.96164689217,5825.75656649673,9729.9115529017,16072.326698307,8261.37042381541,5651.0431618057,2789.24490176169,6101.29738523529,8262.96933094689,4733.43843513239,8513.89146251061,6480.89857289013,7278.5952432169,5074.26849424897,5194.80371218427,5291.70870315279,7273.74279383389,11541.5583651975,11887.8176221771,7612.12465806616,8517.36582819497,9040.57262585526,3726.61968818822,4170.59701767535,16090.1876618847,2936.76556109772,3367.94064943991,3328.23823877601,2431.88009395781,3475.20170736139,4028.3699117895,7185.2022847512,10767.5947007149,9874.30158443055,4755.97719251412,3539.54293669057,2746.2203647146,11054.1065569344,8001.17514329719,8781.5263442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