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{{UBERON
{{UBERON
|id=UBERON:0001630
|alt_id=UBERON:FMA_5022-MIAA_0000302-XAO_0000174
|name=muscle organ
|anatomical_img_id=FMA:5022
|namespace=
|def="Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]." [GO:0007517]
|xref=AAO:0011066;;BTO:0001103;;EMAPA:18187;;EMAPA:18923;;EV:0100146;;FMA:5022;;GAID:131;;galen:Muscle;;MA:0000015;;OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA;;SCTID:71616004;;TAO:0005145;;VHOG:0001245;;XAO:0000172;;ZFA:0005145
|is_a=UBERON:0000062;;UBERON:0005090
|synonym="muscle" EXACT [ZFA:0005145];;"skeletal muscle system" RELATED [BTO:0001103];;"somatic muscle" RELATED [BTO:0001103]
|comment=
|comment=
|alt_id=UBERON:FMA_5022-MIAA_0000302-XAO_0000174
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]." [GO:0007517]
|subset=organ_slim;;uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001630
|is_a=UBERON:0000062;;UBERON:0005090
|is_obsolete=
|located_in=
|located_in=
|name=muscle organ
|namespace=
|obo_creation_date=
|part_of=UBERON:0000383
|part_of=UBERON:0000383
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of tissue composed of contractile fibers.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of tissue composed of contractile fibers.[TAO]" xsd:string
|is_obsolete=
|subset=organ_slim;;uberon_slim;;vertebrate_core
|preceded_by=
|synonym="muscle" EXACT [ZFA:0005145];;"skeletal muscle system" RELATED [BTO:0001103];;"somatic muscle" RELATED [BTO:0001103]
|union_of=
|xref=AAO:0011066;;BTO:0001103;;EMAPA:18187;;EMAPA:18923;;EV:0100146;;FMA:5022;;GAID:131;;galen:Muscle;;MA:0000015;;OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA;;SCTID:71616004;;TAO:0005145;;VHOG:0001245;;XAO:0000172;;ZFA:0005145
}}
}}

Revision as of 18:39, 29 November 2012

Name:muscle organ
Definition:"Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]." [GO:0007517]
Xrefs:
links:

AAO:0011066
BTO:0001103
EMAPA:18187
EMAPA:18923
EV:0100146
FMA:5022
GAID:131
galen:Muscle
MA:0000015
OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA
SCTID:71616004
TAO:0005145
VHOG:0001245
XAO:0000172

ZFA:0005145
Synonyms: "muscle" EXACT [ZFA:0005145]
"skeletal muscle system" RELATED [BTO:0001103]
"somatic muscle" RELATED [BTO:0001103]
Alt_id: UBERON:FMA_5022-MIAA_0000302-XAO_0000174
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ),UBERON:0005090(muscle structure)
part_of:UBERON:0000383(musculature of body)



Children

is a:UBERON:0001665 (triceps surae),UBERON:0001774 (muscle of trunk),UBERON:0002463 (hamstring muscle),UBERON:0003831 (respiratory system muscle),UBERON:0004277 (eye muscle),UBERON:0014892 (skeletal muscle organ)
disjoint from:UBERON:0001474 (bone element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001630 (muscle organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue composed of contractile fibers.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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