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MCL coexpression mm9:124: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0002106!4.95e-09!6;UBERON:0004457!4.95e-09!6;UBERON:0000042!4.95e-09!6;UBERON:0004854!4.95e-09!6;UBERON:0009034!4.95e-09!6;UBERON:0002095!4.95e-09!6;UBERON:0004782!4.95e-09!6;UBERON:0003281!4.95e-09!6;UBERON:0009664!4.95e-09!6;UBERON:0002296!4.95e-09!6;UBERON:0005602!4.95e-09!6;UBERON:0001179!4.95e-09!6;UBERON:0006293!4.95e-09!6;UBERON:0003887!2.83e-07!10
|ontology_enrichment_uberon=UBERON:0002106!4.95e-09!6;UBERON:0004457!4.95e-09!6;UBERON:0000042!4.95e-09!6;UBERON:0004854!4.95e-09!6;UBERON:0009034!4.95e-09!6;UBERON:0002095!4.95e-09!6;UBERON:0004782!4.95e-09!6;UBERON:0003281!4.95e-09!6;UBERON:0009664!4.95e-09!6;UBERON:0002296!4.95e-09!6;UBERON:0005602!4.95e-09!6;UBERON:0001179!4.95e-09!6;UBERON:0006293!4.95e-09!6;UBERON:0003887!2.83e-07!10
|tfbs_overrepresentation_for_novel_motifs=0.0235493,0.00159344,0.000522699,1.59495,0.31299,0.362952,0.0382097,1.07406,0.197079,0.000261783,0.0245068,1.17505,0.00377033,0.0427779,0.521938,0,0.0415391,0.404269,0.026425,0.00822696,1.36381,0.082121,0.0424299,1.43712,0.00462041,0.147389,0.994332,0.25512,0.0800993,0.0576993,0.0507218,0.256697,0.0640462,0.0403247,0.00904493,0.000133072,0.00387953,0.207677,0.181329,0.00806627,1.16507,0.00264123,0.25481,0.906511,0.00408411,0.0350753,0.0235969,0.0685648,0.134845,0.513396,0.146638,0.0671969,0.0154844,0.136501,0.145559,0.00893593,0.744444,0.0893825,0.266986,0.00874369,0.0665417,0.0155671,0.449013,0.0343314,0.138071,0.0447373,0.225275,0.485211,0.231333,0.367785,0.0028708,1.83291,9.77835e-05,0.491913,6.3484e-05,0.0178629,0.0670128,0.234271,2.30113,2.37967,0.369871,0.175806,1.25981,0.216409,0.10554,7.23991e-09,0.0680153,0.00488599,0.0245176,0.624063,0.271518,0.349496,0.270315,1.25898,0.000465383,1.02869,0.159779,0.0797043,0.101631,0.0485149,0.64213,0.545345,0.12773,0.615489,0.339254,0.00262444,0.0535634,0.453441,0.00242052,0.00209196,0.056713,0.128614,0.216671,0.00454363,0.758106,0.928306,2.34509e-06,0.197842,0.369787,0.152789,0.16675,0.85378,1.47134,0.719643,0.314731,0.222599,0.427149,0.0760355,0.224307,0.0871258,0.380056,0.179659,0.205782,0.750553,0.291465,0.00738236,1.34122,0.240838,0.714917,0.962418,0.596154,0.646886,0.546041,0.958166,0.0353627,0.239051,0.253596,0.924926,1.06608,0.000338938,0.0619631,1.1543e-08,0.42585,0.214285,0.488237,1.02746,0.35024,0.426357,0.532388,0.000999888,0.263991,0.342512,0.0620616,0.11671,0.589177,0.272173,0.242516,0.210703,1.97903e-08
|tfbs_overrepresentation_for_novel_motifs=0.0235493,0.00159344,0.000522699,1.59495,0.31299,0.362952,0.0382097,1.07406,0.197079,0.000261783,0.0245068,1.17505,0.00377033,0.0427779,0.521938,0,0.0415391,0.404269,0.026425,0.00822696,1.36381,0.082121,0.0424299,1.43712,0.00462041,0.147389,0.994332,0.25512,0.0800993,0.0576993,0.0507218,0.256697,0.0640462,0.0403247,0.00904493,0.000133072,0.00387953,0.207677,0.181329,0.00806627,1.16507,0.00264123,0.25481,0.906511,0.00408411,0.0350753,0.0235969,0.0685648,0.134845,0.513396,0.146638,0.0671969,0.0154844,0.136501,0.145559,0.00893593,0.744444,0.0893825,0.266986,0.00874369,0.0665417,0.0155671,0.449013,0.0343314,0.138071,0.0447373,0.225275,0.485211,0.231333,0.367785,0.0028708,1.83291,9.77835e-05,0.491913,6.3484e-05,0.0178629,0.0670128,0.234271,2.30113,2.37967,0.369871,0.175806,1.25981,0.216409,0.10554,7.23991e-09,0.0680153,0.00488599,0.0245176,0.624063,0.271518,0.349496,0.270315,1.25898,0.000465383,1.02869,0.159779,0.0797043,0.101631,0.0485149,0.64213,0.545345,0.12773,0.615489,0.339254,0.00262444,0.0535634,0.453441,0.00242052,0.00209196,0.056713,0.128614,0.216671,0.00454363,0.758106,0.928306,2.34509e-06,0.197842,0.369787,0.152789,0.16675,0.85378,1.47134,0.719643,0.314731,0.222599,0.427149,0.0760355,0.224307,0.0871258,0.380056,0.179659,0.205782,0.750553,0.291465,0.00738236,1.34122,0.240838,0.714917,0.962418,0.596154,0.646886,0.546041,0.958166,0.0353627,0.239051,0.253596,0.924926,1.06608,0.000338938,0.0619631,1.1543e-08,0.42585,0.214285,0.488237,1.02746,0.35024,0.426357,0.532388,0.000999888,0.263991,0.342512,0.0620616,0.11671,0.589177,0.272173,0.242516,0.210703,1.97903e-08
|tfbs_overrepresentation_jaspar=MA0003.1;2.65364e-08,MA0004.1;0.0402427,MA0006.1;0.0081531,MA0007.1;0.290948,MA0009.1;0.596955,MA0014.1;2.33048e-10,MA0017.1;0.132611,MA0019.1;0.525896,MA0024.1;0.513344,MA0025.1;0.587114,MA0027.1;1.4456,MA0028.1;0.000596403,MA0029.1;0.819825,MA0030.1;0.0622504,MA0031.1;0.189847,MA0038.1;0.0542375,MA0040.1;2.11415,MA0041.1;0.806728,MA0042.1;0.538041,MA0043.1;0.127233,MA0046.1;1.1104,MA0048.1;0.00453125,MA0050.1;0.0610005,MA0051.1;0.0120339,MA0052.1;0.308246,MA0055.1;2.63659e-05,MA0056.1;0,MA0057.1;0.00555507,MA0058.1;0.0104397,MA0059.1;0.0364409,MA0060.1;0.0195444,MA0061.1;0.12133,MA0063.1;0,MA0066.1;0.279057,MA0067.1;0.275496,MA0068.1;0.0232275,MA0069.1;0.308633,MA0070.1;0.619141,MA0071.1;0.428226,MA0072.1;0.602348,MA0073.1;7.32889e-15,MA0074.1;0.103624,MA0076.1;0.000154191,MA0077.1;0.949709,MA0078.1;0.625217,MA0081.1;0.194587,MA0083.1;0.126842,MA0084.1;0.53041,MA0087.1;0.345956,MA0088.1;0.00514257,MA0089.1;0,MA0090.1;0.0263667,MA0091.1;0.214817,MA0092.1;0.248215,MA0093.1;0.00359675,MA0095.1;0,MA0098.1;0,MA0100.1;0.00581974,MA0101.1;0.16868,MA0103.1;0.151842,MA0105.1;0.000612908,MA0106.1;0.079458,MA0107.1;0.140691,MA0108.2;0.579449,MA0109.1;0,MA0111.1;0.0316228,MA0113.1;0.337914,MA0114.1;0.183839,MA0115.1;0.4037,MA0116.1;0.0217293,MA0117.1;0.363418,MA0119.1;1.33838,MA0122.1;0.387996,MA0124.1;1.25123,MA0125.1;0.193202,MA0130.1;0,MA0131.1;0.115389,MA0132.1;0,MA0133.1;0,MA0135.1;0.447413,MA0136.1;0.252144,MA0139.1;0.0180419,MA0140.1;1.87629,MA0141.1;0.301196,MA0142.1;1.08668,MA0143.1;0.916528,MA0144.1;0.689715,MA0145.1;0.00433964,MA0146.1;5.05315e-07,MA0147.1;0.00336139,MA0148.1;0.793967,MA0149.1;0.000521089,MA0062.2;5.44281e-05,MA0035.2;1.51782,MA0039.2;4.3767e-10,MA0138.2;0.109897,MA0002.2;0.328128,MA0137.2;0.105983,MA0104.2;0.000576161,MA0047.2;0.146525,MA0112.2;0.00827371,MA0065.2;0.00443387,MA0150.1;0.654945,MA0151.1;0,MA0152.1;0.506523,MA0153.1;0.154746,MA0154.1;0.212652,MA0155.1;0.00474942,MA0156.1;0.0939164,MA0157.1;0.346223,MA0158.1;0,MA0159.1;0.0124759,MA0160.1;0.571264,MA0161.1;0,MA0162.1;1.2013e-09,MA0163.1;3.1015e-06,MA0164.1;0.680369,MA0080.2;0.348953,MA0018.2;0.046978,MA0099.2;0.483452,MA0079.2;0,MA0102.2;0.57529,MA0258.1;0.22437,MA0259.1;0.00251909,MA0442.1;0
}}
}}

Revision as of 11:13, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:28593827..28593830,+p@chr10:28593827..28593830
+
Mm9::chr10:36360889..36360893,+p@chr10:36360889..36360893
+
Mm9::chr10:40941126..40941138,-p@chr10:40941126..40941138
-
Mm9::chr10:40941203..40941208,-p@chr10:40941203..40941208
-
Mm9::chr10:50076400..50076404,+p@chr10:50076400..50076404
+
Mm9::chr11:102210609..102210613,-p@chr11:102210609..102210613
-
Mm9::chr11:102210718..102210728,-p@chr11:102210718..102210728
-
Mm9::chr11:102219791..102219815,-p@chr11:102219791..102219815
-
Mm9::chr11:102222759..102222771,-p@chr11:102222759..102222771
-
Mm9::chr11:18112205..18112208,+p@chr11:18112205..18112208
+
Mm9::chr11:32196491..32196492,+p1@Hba-a2
Mm9::chr11:32197127..32197159,+p@chr11:32197127..32197159
+
Mm9::chr11:5474110..5474118,+p4@Ankrd36
Mm9::chr11:5474159..5474170,+p2@Ankrd36
Mm9::chr11:6499438..6499448,-p@chr11:6499438..6499448
-
Mm9::chr11:69399522..69399554,+p@chr11:69399522..69399554
+
Mm9::chr11:78490121..78490126,+p@chr11:78490121..78490126
+
Mm9::chr12:108617266..108617267,+p@chr12:108617266..108617267
+
Mm9::chr12:119069354..119069356,+p@chr12:119069354..119069356
+
Mm9::chr12:25398594..25398600,+p@chr12:25398594..25398600
+
Mm9::chr12:33892535..33892536,+p@chr12:33892535..33892536
+
Mm9::chr12:75309346..75309347,+p@chr12:75309346..75309347
+
Mm9::chr12:95293471..95293476,+p@chr12:95293471..95293476
+
Mm9::chr13:14602355..14602361,+p@chr13:14602355..14602361
+
Mm9::chr13:23831059..23831067,+p@chr13:23831059..23831067
+
Mm9::chr13:89417961..89417962,-p@chr13:89417961..89417962
-
Mm9::chr13:94937146..94937147,+p@chr13:94937146..94937147
+
Mm9::chr14:39440035..39440038,+p@chr14:39440035..39440038
+
Mm9::chr14:69863304..69863315,-p@chr14:69863304..69863315
-
Mm9::chr14:70642253..70642267,+p@chr14:70642253..70642267
+
Mm9::chr14:70866262..70866274,+p@chr14:70866262..70866274
+
Mm9::chr14:74198686..74198689,+p@chr14:74198686..74198689
+
Mm9::chr15:24185318..24185321,+p@chr15:24185318..24185321
+
Mm9::chr15:39568161..39568162,+p@chr15:39568161..39568162
+
Mm9::chr15:56003668..56003696,-p@chr15:56003668..56003696
-
Mm9::chr15:77307474..77307478,+p1@Apol10a
p1@LOC100505148
Mm9::chr15:93826629..93826633,+p@chr15:93826629..93826633
+
Mm9::chr16:31141596..31141600,+p@chr16:31141596..31141600
+
Mm9::chr16:76825015..76825017,+p@chr16:76825015..76825017
+
Mm9::chr17:50648400..50648423,+p5@Plcl2
Mm9::chr17:84975629..84975633,+p@chr17:84975629..84975633
+
Mm9::chr18:10715046..10715048,+p@chr18:10715046..10715048
+
Mm9::chr18:37563707..37563712,+p@chr18:37563707..37563712
+
Mm9::chr18:55201820..55201826,+p@chr18:55201820..55201826
+
Mm9::chr18:71090441..71090442,+p@chr18:71090441..71090442
+
Mm9::chr18:87173747..87173751,+p@chr18:87173747..87173751
+
Mm9::chr19:24575233..24575239,+p@chr19:24575233..24575239
+
Mm9::chr19:4127266..4127286,-p@chr19:4127266..4127286
-
Mm9::chr19:4859222..4859262,+p@chr19:4859222..4859262
+
Mm9::chr1:136173181..136173183,+p@chr1:136173181..136173183
+
Mm9::chr1:63149723..63149724,+p@chr1:63149723..63149724
+
Mm9::chr1:93262989..93263010,+p2@Fam132b
Mm9::chr1:93263022..93263045,+p1@Fam132b
Mm9::chr2:114025951..114025954,+p@chr2:114025951..114025954
+
Mm9::chr2:117712134..117712137,+p@chr2:117712134..117712137
+
Mm9::chr2:127840919..127840923,+p@chr2:127840919..127840923
+
Mm9::chr2:148911295..148911298,+p@chr2:148911295..148911298
+
Mm9::chr2:47400847..47400850,+p@chr2:47400847..47400850
+
Mm9::chr2:95321604..95321605,+p@chr2:95321604..95321605
+
Mm9::chr2:98503870..98503876,+p@chr2:98503870..98503876
+
Mm9::chr3:14808358..14808373,-p2@Car1
Mm9::chr3:14887388..14887416,+p@chr3:14887388..14887416
+
Mm9::chr3:41343162..41343165,+p@chr3:41343162..41343165
+
Mm9::chr3:51394629..51394636,+p@chr3:51394629..51394636
+
Mm9::chr3:59337335..59337338,+p@chr3:59337335..59337338
+
Mm9::chr3:7133293..7133296,+p@chr3:7133293..7133296
+
Mm9::chr4:122758278..122758295,+p@chr4:122758278..122758295
+
Mm9::chr4:135728581..135728668,+p1@E2f2
Mm9::chr4:149009349..149009361,+p@chr4:149009349..149009361
+
Mm9::chr4:155574143..155574146,-p@chr4:155574143..155574146
-
Mm9::chr4:23954947..23954957,+p@chr4:23954947..23954957
+
Mm9::chr4:5713820..5713822,+p@chr4:5713820..5713822
+
Mm9::chr4:7597102..7597105,+p@chr4:7597102..7597105
+
Mm9::chr5:105838360..105838392,+p1@uc008yld.1
Mm9::chr5:133715438..133715442,+p@chr5:133715438..133715442
+
Mm9::chr5:136704291..136704298,+p@chr5:136704291..136704298
+
Mm9::chr5:28321008..28321014,+p@chr5:28321008..28321014
+
Mm9::chr5:62179269..62179272,+p@chr5:62179269..62179272
+
Mm9::chr7:110961038..110961042,+p@chr7:110961038..110961042
+
Mm9::chr7:110961199..110961210,-p@chr7:110961199..110961210
-
Mm9::chr7:110975043..110975054,+p@chr7:110975043..110975054
+
Mm9::chr7:110975163..110975182,+p@chr7:110975163..110975182
+
Mm9::chr7:13909919..13909935,+p2@Pla2g4c
Mm9::chr7:57014882..57014899,+p2@Htatip2
Mm9::chr7:78374198..78374200,+p@chr7:78374198..78374200
+
Mm9::chr8:123049251..123049271,+p@chr8:123049251..123049271
+
Mm9::chr8:23515716..23515717,+p@chr8:23515716..23515717
+
Mm9::chr8:87493585..87493605,+p1@LOC100504815
p3@Prdx2
Mm9::chr9:101894080..101894106,+p@chr9:101894080..101894106
+
Mm9::chr9:108276696..108276698,+p@chr9:108276696..108276698
+
Mm9::chr9:45187980..45187986,+p@chr9:45187980..45187986
+
Mm9::chr9:58077631..58077635,-p6@Pml
Mm9::chrX:112797311..112797312,+p@chrX:112797311..112797312
+
Mm9::chrX:134485034..134485039,-p@chrX:134485034..134485039
-
Mm9::chrX:136488391..136488392,+p@chrX:136488391..136488392
+
Mm9::chrX:146999769..146999784,+p@chrX:146999769..146999784
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
spleen4.95e-096
cavity lining4.95e-096
serous membrane4.95e-096
gastrointestinal system mesentery4.95e-096
stomach region4.95e-096
mesentery4.95e-096
gastrointestinal system serosa4.95e-096
mesentery of stomach4.95e-096
gut mesentery4.95e-096
dorsal mesentery4.95e-096
dorsal mesogastrium4.95e-096
peritoneal cavity4.95e-096
spleen primordium4.95e-096
intraembryonic coelom2.83e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.65364e-08
MA0004.10.0402427
MA0006.10.0081531
MA0007.10.290948
MA0009.10.596955
MA0014.12.33048e-10
MA0017.10.132611
MA0019.10.525896
MA0024.10.513344
MA0025.10.587114
MA0027.11.4456
MA0028.10.000596403
MA0029.10.819825
MA0030.10.0622504
MA0031.10.189847
MA0038.10.0542375
MA0040.12.11415
MA0041.10.806728
MA0042.10.538041
MA0043.10.127233
MA0046.11.1104
MA0048.10.00453125
MA0050.10.0610005
MA0051.10.0120339
MA0052.10.308246
MA0055.12.63659e-05
MA0056.10
MA0057.10.00555507
MA0058.10.0104397
MA0059.10.0364409
MA0060.10.0195444
MA0061.10.12133
MA0063.10
MA0066.10.279057
MA0067.10.275496
MA0068.10.0232275
MA0069.10.308633
MA0070.10.619141
MA0071.10.428226
MA0072.10.602348
MA0073.17.32889e-15
MA0074.10.103624
MA0076.10.000154191
MA0077.10.949709
MA0078.10.625217
MA0081.10.194587
MA0083.10.126842
MA0084.10.53041
MA0087.10.345956
MA0088.10.00514257
MA0089.10
MA0090.10.0263667
MA0091.10.214817
MA0092.10.248215
MA0093.10.00359675
MA0095.10
MA0098.10
MA0100.10.00581974
MA0101.10.16868
MA0103.10.151842
MA0105.10.000612908
MA0106.10.079458
MA0107.10.140691
MA0108.20.579449
MA0109.10
MA0111.10.0316228
MA0113.10.337914
MA0114.10.183839
MA0115.10.4037
MA0116.10.0217293
MA0117.10.363418
MA0119.11.33838
MA0122.10.387996
MA0124.11.25123
MA0125.10.193202
MA0130.10
MA0131.10.115389
MA0132.10
MA0133.10
MA0135.10.447413
MA0136.10.252144
MA0139.10.0180419
MA0140.11.87629
MA0141.10.301196
MA0142.11.08668
MA0143.10.916528
MA0144.10.689715
MA0145.10.00433964
MA0146.15.05315e-07
MA0147.10.00336139
MA0148.10.793967
MA0149.10.000521089
MA0062.25.44281e-05
MA0035.21.51782
MA0039.24.3767e-10
MA0138.20.109897
MA0002.20.328128
MA0137.20.105983
MA0104.20.000576161
MA0047.20.146525
MA0112.20.00827371
MA0065.20.00443387
MA0150.10.654945
MA0151.10
MA0152.10.506523
MA0153.10.154746
MA0154.10.212652
MA0155.10.00474942
MA0156.10.0939164
MA0157.10.346223
MA0158.10
MA0159.10.0124759
MA0160.10.571264
MA0161.10
MA0162.11.2013e-09
MA0163.13.1015e-06
MA0164.10.680369
MA0080.20.348953
MA0018.20.046978
MA0099.20.483452
MA0079.20
MA0102.20.57529
MA0258.10.22437
MA0259.10.00251909
MA0442.10
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