NonredundantMotifs:26: Difference between revisions
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|entrez_gene_id=1482
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NKX3-2.p2~NKX2-1,4.p2 /HOMER:NKX2-5_HL1-Nkx2.5.biotin-ChIP-Seq /JASPAR:MA0122.1;...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=1482 | |entrez_gene_id=1482 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NKX3-2.p2~NKX2-1,4.p2 /HOMER:NKX2-5_HL1-Nkx2.5.biotin-ChIP-Seq | |motif_cluster_2013_march_motif_members= /JASPAR:MA0122.1;Nkx3-2 /HOCOMOCO:NKX28_f1~NKX32_f1~NKX25_f1~NKX21_f1 /SWISSREGULON:NKX3-2.p2~NKX2-1,4.p2 /HOMER:NKX2-5_HL1-Nkx2.5.biotin-ChIP-Seq /UNIPROBE:Titf1_1722.2;CELL08~Nkx2-2_2823.1;CELL08~Nkx2-6_3437.1;CELL08~Nkx2-4_3074.1;CELL08~Nkx2-5_3436.1;CELL08 | ||
|name=known26 | |name=known26 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known26
- db :HOCOMOCO
- Id :NKX25_f1
- name :
- score :0.1500228848659613
- External refs:
- Internal refs:
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Sub Motif Members
