NonredundantMotifs:57: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;50.205524;0.917721;0.887409;135.08469!2;0.98581;50.662145;11.092311;124.355078!3;179.718929;0.930629;5.513616;0.93217!4;187.095344;0;0;0!5;19.167047;0.900329;167.027968;0!6;7.569904;1.91438;1.79216;175.8189!7;76.898677;3.644429;106.552238;0!8;5.456574;69.521663;64.33702;47.780087!9;5.611117;8.318454;3.72791;169.437863!10;0.881217;1.785396;0;184.428731 | |PWM=PO;A;C;G;T!1;50.205524;0.917721;0.887409;135.08469!2;0.98581;50.662145;11.092311;124.355078!3;179.718929;0.930629;5.513616;0.93217!4;187.095344;0;0;0!5;19.167047;0.900329;167.027968;0!6;7.569904;1.91438;1.79216;175.8189!7;76.898677;3.644429;106.552238;0!8;5.456574;69.521663;64.33702;47.780087!9;5.611117;8.318454;3.72791;169.437863!10;0.881217;1.785396;0;184.428731 | ||
|entrez_gene_id= | |entrez_gene_id=NKX2-2,8 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NKX2-2,8.p2 /UNIPROBE:Nkx2-9_3082.1;CELL08~Nkx2-3_3435.1;CELL08~Nkx3-1_secondary;SCI09~Nkx3-1_2923.2;CELL08 /HOCOMOCO:NKX22_si | |motif_cluster_2013_march_motif_members= /SWISSREGULON:NKX2-2,8.p2 /UNIPROBE:Nkx2-9_3082.1;CELL08~Nkx2-3_3435.1;CELL08~Nkx3-1_secondary;SCI09~Nkx3-1_2923.2;CELL08 /HOCOMOCO:NKX22_si | ||
|name=known57 | |name=known57 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=NKX2-2,8.p2 | |representative_motif_id=NKX2-2,8.p2 | ||
|representative_motif_name= | |representative_motif_name=NKX2-2,8 | ||
|score=0.107232453455117 | |score=0.107232453455117 | ||
|uniprot_entry_name= | |uniprot_entry_name=NKX2-2,8 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known57
- db :SWISSREGULON
- Id :NKX2-2,8.p2
- name :NKX2-2,8
- score :0.107232453455117
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
