NonredundantMotifs:38: Difference between revisions
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|entrez_gene_id=2099
|motif_cluster_2013_march_motif_members= /SWISSREGULON:PPARG.p2~ESR1.p3 /HOMER:ESR1_MCF7-ERa-ChIP-Seq~NR1D1_BLRP(RAW)-Reverba-ChIP-Seq ...") |
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;122;120;154;71!2;107;80;164;117!3;64;173;149;82!4;83;229;65;93!5;134;232;47;57!6;308;28;89;48!7;36;8;387;43!8;19;18;420;18!9;33;41;91;310!10;4;394;53;24!11;398;13;27;37!12;58;250;107;60!13;63;276;53;83!14;64;258;97;56!15;32;19;8;416!16;21;22;426;6!17;305;106;31;33!18;10;436;12;17!19;59;353;2;61!20;26;165;22;262 | |||
|entrez_gene_id=2099 | |entrez_gene_id=2099 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:ESR1_do~ESR2_do /HOMER:NR1D1_BLRP(RAW)-Reverba-ChIP-Seq~ESR1_MCF7-ERa-ChIP-Seq /JASPAR:MA0258.1;ESR2~MA0112.2;ESR1~MA0066.1;PPARG /SWISSREGULON:PPARG.p2~ESR1.p3 | ||
|name= | |name=non-redundant38 | ||
|representative_motif_db=JASPAR | |representative_motif_db=JASPAR | ||
|representative_motif_id=MA0112.2 | |representative_motif_id=MA0112.2 | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant38
- db :JASPAR
- Id :MA0112.2
- name :ESR1
- score :0.6553463632180748
- External refs:
- Internal refs:
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Sub Motif Members
