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|PWM=P0;A;C;G;T!1;0.35756470076852;0.0954381691895284;0.34511039070185;0.201886739340102!2;0.415206050345836;0.108700720665511;0.16002991456699;0.316063314421663!3;0.276709760777394;0.105225637673383;0.183596745384779;0.434467856164444!4;0.461480553038693;0.135299782823281;0.303126352691022;0.100093311447003!5;0.190185940392405;0.0355782317102172;0.728289866454078;0.0459459614432999!6;0.0408928353769656;0.024794397047563;0.889495270283205;0.0448174972922664!7;0.197091523306651;0.0182971983172974;0.781124249395739;0.00348702898031239!8;0.00521155486531847;0.00218953848470454;0.0274213737723319;0.965177532877645!9;0.970183493434375;0.00245140087354032;0.0213400888687545;0.00602501682332986!10;0.00464458329716392;0.00238119943200551;0.00378802660826466;0.989186190662566!11;0.0174132553850917;0.955356831012022;0.00726765174211025;0.0199622618607764!12;0.927889438456816;0.0185126412029892;0.0134210299149716;0.0401768904252236!13;0.411060244814999;0.139132912859194;0.0964616346628257;0.353345207662981!14;0.215584622536131;0.23793242948421;0.205422459152599;0.34106048882706!15;0.409188759670912;0.134753734528492;0.0841788916191239;0.371878614181472!16;0.210772190485883;0.273586434178711;0.108006209750002;0.407635165585405!17;0.0917809776490118;0.159161098893513;0.216287548386485;0.53277037507099
|PWM=P0;A;C;G;T!1;0.35756470076852;0.0954381691895284;0.34511039070185;0.201886739340102!2;0.415206050345836;0.108700720665511;0.16002991456699;0.316063314421663!3;0.276709760777394;0.105225637673383;0.183596745384779;0.434467856164444!4;0.461480553038693;0.135299782823281;0.303126352691022;0.100093311447003!5;0.190185940392405;0.0355782317102172;0.728289866454078;0.0459459614432999!6;0.0408928353769656;0.024794397047563;0.889495270283205;0.0448174972922664!7;0.197091523306651;0.0182971983172974;0.781124249395739;0.00348702898031239!8;0.00521155486531847;0.00218953848470454;0.0274213737723319;0.965177532877645!9;0.970183493434375;0.00245140087354032;0.0213400888687545;0.00602501682332986!10;0.00464458329716392;0.00238119943200551;0.00378802660826466;0.989186190662566!11;0.0174132553850917;0.955356831012022;0.00726765174211025;0.0199622618607764!12;0.927889438456816;0.0185126412029892;0.0134210299149716;0.0401768904252236!13;0.411060244814999;0.139132912859194;0.0964616346628257;0.353345207662981!14;0.215584622536131;0.23793242948421;0.205422459152599;0.34106048882706!15;0.409188759670912;0.134753734528492;0.0841788916191239;0.371878614181472!16;0.210772190485883;0.273586434178711;0.108006209750002;0.407635165585405!17;0.0917809776490118;0.159161098893513;0.216287548386485;0.53277037507099
|entrez_gene_id=4990
|entrez_gene_id=4990
|motif_cluster_2013_march_motif_members= /UNIPROBE:Six6_2267.5;CELL08~Six2_2307.2;CELL08~Six3_1732.2;CELL08~Dobox4_3956.2;CELL08~Six6_2267.4;CELL08~Six1_0935.2;CELL08~Six6_primary;SCI09
|motif_cluster_2013_march_motif_members= /UNIPROBE:Six1_0935.2;CELL08~Six2_2307.2;CELL08~Six6_primary;SCI09~Six6_2267.4;CELL08~Six3_1732.2;CELL08~Six6_2267.5;CELL08~Dobox4_3956.2;CELL08
|name=known49
|name=non-redundant49
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Six6_2267.5
|representative_motif_id=Six6_2267.5
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant49
  • db :UNIPROBE
  • Id :Six6_2267.5
  • name :CELL08
  • score :0.04736515660286219
  • External refs:
EntrezGene:4990
UniProt:4990

  • Internal refs:
EntrezGene:4990


Motif matrix
P0ACGT
10.357564700768520.09543816918952840.345110390701850.201886739340102
20.4152060503458360.1087007206655110.160029914566990.316063314421663
30.2767097607773940.1052256376733830.1835967453847790.434467856164444
40.4614805530386930.1352997828232810.3031263526910220.100093311447003
50.1901859403924050.03557823171021720.7282898664540780.0459459614432999
60.04089283537696560.0247943970475630.8894952702832050.0448174972922664
70.1970915233066510.01829719831729740.7811242493957390.00348702898031239
80.005211554865318470.002189538484704540.02742137377233190.965177532877645
90.9701834934343750.002451400873540320.02134008886875450.00602501682332986
100.004644583297163920.002381199432005510.003788026608264660.989186190662566
110.01741325538509170.9553568310120220.007267651742110250.0199622618607764
120.9278894384568160.01851264120298920.01342102991497160.0401768904252236
130.4110602448149990.1391329128591940.09646163466282570.353345207662981
140.2155846225361310.237932429484210.2054224591525990.34106048882706
150.4091887596709120.1347537345284920.08417889161912390.371878614181472
160.2107721904858830.2735864341787110.1080062097500020.407635165585405
170.09178097764901180.1591610988935130.2162875483864850.53277037507099

Sub Motif Members

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