FFCP PHASE1:Hg19::chr12:55413721..55413728,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=58158|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=13802|TSSclassifier=S|UniProt=Q9HD90,Q8IW56|association_with_transcript=0bp_to_ENST00000242994,NM_021191,uc001sgp.3_5end|coexpression_cluster_id=C24|description=CAGE_peak_3_at_NEUROD4_5end|id=chr12:55413721..55413728,+|ontology_enrichment_celltype=CL:0000047!1.91e-09!8|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3119!2.42e-09!14|ontology_enrichment_disease_v019=DOID:154;1.27e-09;2!DOID:4236;1.27e-09;2|ontology_enrichment_disease_v019_2=DOID:154,1.22e-09,2;DOID:4236,1.22e-09,2|ontology_enrichment_uberon=UBERON:0003296!1.56e-33!4;UBERON:0010133!1.56e-33!4;UBERON:0001894!2.76e-19!7;UBERON:0006222!2.76e-19!7;UBERON:0001905!7.07e-18!2;UBERON:0002757!7.07e-18!2;UBERON:0010134!7.07e-18!2;UBERON:0002784!7.07e-18!2;UBERON:0005408!7.07e-18!2;UBERON:0001899!7.07e-18!2;UBERON:0000007!1.76e-17!2;UBERON:0000073!1.03e-11!94;UBERON:0001016!1.03e-11!94;UBERON:0005743!4.76e-11!86;UBERON:0001017!1.01e-09!82;UBERON:0002581!5.72e-09!1;UBERON:0004121!9.18e-08!169;UBERON:0003075!1.14e-07!86;UBERON:0007284!1.14e-07!86;UBERON:0000924!1.59e-07!173;UBERON:0006601!1.59e-07!173;UBERON:0003056!2.73e-07!61;UBERON:0002346!2.91e-07!90|ontology_enrichment_uberon_v019=UBERON:0003296;1.13e-66;4!UBERON:0010133;1.13e-66;4!UBERON:0001894;2.31e-38;7!UBERON:0001905;1.11e-34;2!UBERON:0002757;1.11e-34;2!UBERON:0010134;1.11e-34;2!UBERON:0005408;1.11e-34;2!UBERON:0001899;1.11e-34;2!UBERON:0000007;7.10e-34;2!UBERON:0002784;6.79e-18;4!UBERON:0002360;1.71e-09;2!UBERON:0000094;1.71e-09;2!UBERON:0010743;1.71e-09;2!UBERON:0002368;2.02e-07;33|ontology_enrichment_uberon_v019_2=UBERON:0003296,1.13e-66,4;UBERON:0010133,1.13e-66,4;UBERON:0001894,2.31e-38,7;UBERON:0006222,2.31e-38,7;UBERON:0001905,1.11e-34,2;UBERON:0002757,1.11e-34,2;UBERON:0010134,1.11e-34,2;UBERON:0005408,1.11e-34,2;UBERON:0001899,1.11e-34,2;UBERON:0000007,7.10e-34,2;UBERON:0002784,6.79e-18,4;UBERON:0002360,1.44e-09,2;UBERON:0000094,1.44e-09,2;UBERON:0010743,1.44e-09,2;UBERON:0001016,1.88e-08,89;UBERON:0002368,5.87e-08,35;UBERON:0001017,5.44e-07,81|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,1.74962768029953,2.95162491386597,0,0,0,0,0,1.97446857438575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.61569185248852,0,0,0,0,0,0,0,0,0,1.37275998289572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83683113910955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756215088665154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,138.211073656598,119.717005109901,1.82089681270989,3.18727067891817,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,2.85845343538116,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p3@NEUROD4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=58158 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13802 | |||
|TSSclassifier=S | |||
|UniProt=Q9HD90,Q8IW56 | |||
|association_with_transcript=0bp_to_ENST00000242994,NM_021191,uc001sgp.3_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_3_at_NEUROD4_5end | |||
|id=chr12:55413721..55413728,+ | |||
|ontology_enrichment_celltype=CL:0000047!1.91e-09!8 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3119!2.42e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:154;1.27e-09;2!DOID:4236;1.27e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:154,1.22e-09,2;DOID:4236,1.22e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0003296!1.56e-33!4;UBERON:0010133!1.56e-33!4;UBERON:0001894!2.76e-19!7;UBERON:0006222!2.76e-19!7;UBERON:0001905!7.07e-18!2;UBERON:0002757!7.07e-18!2;UBERON:0010134!7.07e-18!2;UBERON:0002784!7.07e-18!2;UBERON:0005408!7.07e-18!2;UBERON:0001899!7.07e-18!2;UBERON:0000007!1.76e-17!2;UBERON:0000073!1.03e-11!94;UBERON:0001016!1.03e-11!94;UBERON:0005743!4.76e-11!86;UBERON:0001017!1.01e-09!82;UBERON:0002581!5.72e-09!1;UBERON:0004121!9.18e-08!169;UBERON:0003075!1.14e-07!86;UBERON:0007284!1.14e-07!86;UBERON:0000924!1.59e-07!173;UBERON:0006601!1.59e-07!173;UBERON:0003056!2.73e-07!61;UBERON:0002346!2.91e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;1.13e-66;4!UBERON:0010133;1.13e-66;4!UBERON:0001894;2.31e-38;7!UBERON:0001905;1.11e-34;2!UBERON:0002757;1.11e-34;2!UBERON:0010134;1.11e-34;2!UBERON:0005408;1.11e-34;2!UBERON:0001899;1.11e-34;2!UBERON:0000007;7.10e-34;2!UBERON:0002784;6.79e-18;4!UBERON:0002360;1.71e-09;2!UBERON:0000094;1.71e-09;2!UBERON:0010743;1.71e-09;2!UBERON:0002368;2.02e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,1.13e-66,4;UBERON:0010133,1.13e-66,4;UBERON:0001894,2.31e-38,7;UBERON:0006222,2.31e-38,7;UBERON:0001905,1.11e-34,2;UBERON:0002757,1.11e-34,2;UBERON:0010134,1.11e-34,2;UBERON:0005408,1.11e-34,2;UBERON:0001899,1.11e-34,2;UBERON:0000007,7.10e-34,2;UBERON:0002784,6.79e-18,4;UBERON:0002360,1.44e-09,2;UBERON:0000094,1.44e-09,2;UBERON:0010743,1.44e-09,2;UBERON:0001016,1.88e-08,89;UBERON:0002368,5.87e-08,35;UBERON:0001017,5.44e-07,81 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,1.74962768029953,2.95162491386597,0,0,0,0,0,1.97446857438575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.61569185248852,0,0,0,0,0,0,0,0,0,1.37275998289572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83683113910955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756215088665154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,138.211073656598,119.717005109901,1.82089681270989,3.18727067891817,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,2.85845343538116,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@NEUROD4 | |||
}} |
Revision as of 23:26, 10 September 2013
Short description: | p3@NEUROD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_NEUROD4_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_ENST00000242994, NM_021191, uc001sgp.3_5end |
EntrezGene: | NEUROD4 |
HGNC: | 13802 |
UniProt: | Q9HD90Q8IW56 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 1.13e-66 | 4 |
neuroendocrine gland | 1.13e-66 | 4 |
diencephalon | 2.31e-38 | 7 |
future diencephalon | 2.31e-38 | 7 |
pineal body | 1.11e-34 | 2 |
regional part of epithalamus | 1.11e-34 | 2 |
secretory circumventricular organ | 1.11e-34 | 2 |
circumventricular organ | 1.11e-34 | 2 |
epithalamus | 1.11e-34 | 2 |
pituitary gland | 7.10e-34 | 2 |
regional part of diencephalon | 6.79e-18 | 4 |
meninx | 1.44e-09 | 2 |
membrane organ | 1.44e-09 | 2 |
meningeal cluster | 1.44e-09 | 2 |
nervous system | 1.88e-08 | 89 |
endocrine gland | 5.87e-08 | 35 |
central nervous system | 5.44e-07 | 81 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 1.22e-09 | 2 |
carcinosarcoma | 1.22e-09 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.