FFCP PHASE1:Hg19::chr13:113698799..113698819,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23263|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14576|TSSclassifier=S|UniProt=|association_with_transcript=23bp_to_ENST00000469558_5end|coexpression_cluster_id=C58|description=CAGE_peak_15_at_MCF2L_5end|id=chr13:113698799..113698819,+|ontology_enrichment_celltype=CL:0000148!5.47e-19!10;CL:0000541!5.47e-19!10;CL:0000147!3.09e-13!14;CL:0002567!8.48e-13!3;CL:0000710!6.34e-09!20|ontology_enrichment_celltype_v019=CL:0000148;8.59e-75;10!CL:0000147;2.17e-53;14!CL:0002567;1.12e-46;3!CL:0000710;2.58e-37;20!CL:0000075;1.43e-27;27!CL:0002077;2.68e-19;34!CL:0002566;8.19e-17;1|ontology_enrichment_celltype_v019_2=CL:0000148,9.07e-75,10;CL:0000541,9.07e-75,10;CL:0000147,2.26e-53,14;CL:0002567,1.21e-46,3;CL:0000710,2.65e-37,20;CL:0000075,1.45e-27,27;CL:0002077,7.99e-22,34;CL:0000333,3.52e-17,41;CL:0002566,7.57e-17,1;CL:0000133,5.51e-12,59;CL:0000221,8.51e-10,72|ontology_enrichment_development_v019=CL:0000133;8.15e-07;59|ontology_enrichment_disease=DOID:1909!6.50e-09!2|ontology_enrichment_disease_v019=DOID:1909;5.50e-31;2|ontology_enrichment_disease_v019_2=DOID:1909,5.50e-31,2|ontology_enrichment_uberon=UBERON:0001049!1.36e-52!57;UBERON:0005068!1.36e-52!57;UBERON:0006241!1.36e-52!57;UBERON:0007135!1.36e-52!57;UBERON:0002616!6.56e-47!59;UBERON:0005743!1.04e-44!86;UBERON:0000073!1.12e-44!94;UBERON:0001016!1.12e-44!94;UBERON:0001017!1.76e-44!82;UBERON:0000955!2.35e-41!69;UBERON:0006238!2.35e-41!69;UBERON:0003075!3.04e-37!86;UBERON:0007284!3.04e-37!86;UBERON:0002020!4.18e-36!34;UBERON:0003528!4.18e-36!34;UBERON:0001893!4.91e-36!34;UBERON:0002780!5.64e-36!41;UBERON:0001890!5.64e-36!41;UBERON:0006240!5.64e-36!41;UBERON:0002346!3.05e-35!90;UBERON:0003080!5.24e-35!42;UBERON:0002791!2.35e-33!33;UBERON:0001869!1.35e-30!32;UBERON:0007023!6.81e-30!115;UBERON:0003056!8.16e-25!61;UBERON:0004121!2.57e-24!169;UBERON:0000924!1.51e-23!173;UBERON:0006601!1.51e-23!173;UBERON:0000033!2.68e-23!123;UBERON:0002619!3.62e-23!22;UBERON:0000153!7.35e-22!129;UBERON:0007811!7.35e-22!129;UBERON:0001950!1.43e-21!20;UBERON:0000956!3.74e-20!25;UBERON:0000203!3.74e-20!25;UBERON:0002308!2.49e-19!9;UBERON:0000125!2.49e-19!9;UBERON:0003076!1.56e-18!15;UBERON:0003057!1.56e-18!15;UBERON:0002298!3.19e-16!8;UBERON:0004733!3.17e-14!12;UBERON:0002028!3.17e-14!12;UBERON:0007277!3.17e-14!12;UBERON:0002420!5.11e-14!9;UBERON:0007245!5.11e-14!9;UBERON:0010009!5.11e-14!9;UBERON:0010011!5.11e-14!9;UBERON:0000454!5.11e-14!9;UBERON:0004732!4.73e-13!13;UBERON:0009663!4.79e-13!7;UBERON:0006331!4.16e-12!3;UBERON:0000988!5.02e-12!3;UBERON:0001871!7.13e-11!7;UBERON:0002680!2.39e-10!9;UBERON:0001895!2.39e-10!9;UBERON:0010092!2.39e-10!9;UBERON:0000025!2.72e-10!194;UBERON:0000200!1.34e-09!6;UBERON:0001875!1.15e-08!2;UBERON:0006514!1.15e-08!2;UBERON:0002148!1.74e-08!2;UBERON:0009662!1.74e-08!2;UBERON:0000483!5.72e-08!309;UBERON:0000119!8.20e-08!312;UBERON:0000475!3.83e-07!365;UBERON:0000349!5.78e-07!5;UBERON:0004111!6.09e-07!241|ontology_enrichment_uberon_v019=UBERON:0002038;1.93e-16;1!UBERON:0009661;1.93e-16;1!UBERON:0002950;1.93e-16;1!UBERON:0001891;1.93e-16;1!UBERON:0001897;8.09e-09;2!UBERON:0010225;8.09e-09;2|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.93e-16,1;UBERON:0009661,1.93e-16,1;UBERON:0002950,1.93e-16,1;UBERON:0001891,1.93e-16,1;UBERON:0009616,1.93e-16,1;UBERON:0010286,1.93e-16,1;UBERON:0001897,7.49e-09,2;UBERON:0010225,7.49e-09,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.93723678652113,7.63976851116555,17.582617081507,5.13217338068116,14.7043314565753,6.00686115687835,37.4432626746057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552896299656123,0.591095237907095,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.684526894459965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.817220436669454,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0.18628920882415,0,0,1.21319294033318,3.42558400253961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0.638535436228605,0,0,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,6.56423532983707,0,0.20170506870352,0,0,0,0,0.337687923091973,0,0.206686796501184,0.19024743058172,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.815636795721981,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,1.18818560130834,0,0,0,0,0,0,0,0,0,0,2.72345207987757,0,0.271965960763659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34462894620464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p15@MCF2L}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=23263 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14576 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=23bp_to_ENST00000469558_5end | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_15_at_MCF2L_5end | |||
|id=chr13:113698799..113698819,+ | |||
|ontology_enrichment_celltype=CL:0000148!5.47e-19!10;CL:0000541!5.47e-19!10;CL:0000147!3.09e-13!14;CL:0002567!8.48e-13!3;CL:0000710!6.34e-09!20 | |||
|ontology_enrichment_celltype_v019=CL:0000148;8.59e-75;10!CL:0000147;2.17e-53;14!CL:0002567;1.12e-46;3!CL:0000710;2.58e-37;20!CL:0000075;1.43e-27;27!CL:0002077;2.68e-19;34!CL:0002566;8.19e-17;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,9.07e-75,10;CL:0000541,9.07e-75,10;CL:0000147,2.26e-53,14;CL:0002567,1.21e-46,3;CL:0000710,2.65e-37,20;CL:0000075,1.45e-27,27;CL:0002077,7.99e-22,34;CL:0000333,3.52e-17,41;CL:0002566,7.57e-17,1;CL:0000133,5.51e-12,59;CL:0000221,8.51e-10,72 | |||
|ontology_enrichment_development_v019=CL:0000133;8.15e-07;59 | |||
|ontology_enrichment_disease=DOID:1909!6.50e-09!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;5.50e-31;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,5.50e-31,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.36e-52!57;UBERON:0005068!1.36e-52!57;UBERON:0006241!1.36e-52!57;UBERON:0007135!1.36e-52!57;UBERON:0002616!6.56e-47!59;UBERON:0005743!1.04e-44!86;UBERON:0000073!1.12e-44!94;UBERON:0001016!1.12e-44!94;UBERON:0001017!1.76e-44!82;UBERON:0000955!2.35e-41!69;UBERON:0006238!2.35e-41!69;UBERON:0003075!3.04e-37!86;UBERON:0007284!3.04e-37!86;UBERON:0002020!4.18e-36!34;UBERON:0003528!4.18e-36!34;UBERON:0001893!4.91e-36!34;UBERON:0002780!5.64e-36!41;UBERON:0001890!5.64e-36!41;UBERON:0006240!5.64e-36!41;UBERON:0002346!3.05e-35!90;UBERON:0003080!5.24e-35!42;UBERON:0002791!2.35e-33!33;UBERON:0001869!1.35e-30!32;UBERON:0007023!6.81e-30!115;UBERON:0003056!8.16e-25!61;UBERON:0004121!2.57e-24!169;UBERON:0000924!1.51e-23!173;UBERON:0006601!1.51e-23!173;UBERON:0000033!2.68e-23!123;UBERON:0002619!3.62e-23!22;UBERON:0000153!7.35e-22!129;UBERON:0007811!7.35e-22!129;UBERON:0001950!1.43e-21!20;UBERON:0000956!3.74e-20!25;UBERON:0000203!3.74e-20!25;UBERON:0002308!2.49e-19!9;UBERON:0000125!2.49e-19!9;UBERON:0003076!1.56e-18!15;UBERON:0003057!1.56e-18!15;UBERON:0002298!3.19e-16!8;UBERON:0004733!3.17e-14!12;UBERON:0002028!3.17e-14!12;UBERON:0007277!3.17e-14!12;UBERON:0002420!5.11e-14!9;UBERON:0007245!5.11e-14!9;UBERON:0010009!5.11e-14!9;UBERON:0010011!5.11e-14!9;UBERON:0000454!5.11e-14!9;UBERON:0004732!4.73e-13!13;UBERON:0009663!4.79e-13!7;UBERON:0006331!4.16e-12!3;UBERON:0000988!5.02e-12!3;UBERON:0001871!7.13e-11!7;UBERON:0002680!2.39e-10!9;UBERON:0001895!2.39e-10!9;UBERON:0010092!2.39e-10!9;UBERON:0000025!2.72e-10!194;UBERON:0000200!1.34e-09!6;UBERON:0001875!1.15e-08!2;UBERON:0006514!1.15e-08!2;UBERON:0002148!1.74e-08!2;UBERON:0009662!1.74e-08!2;UBERON:0000483!5.72e-08!309;UBERON:0000119!8.20e-08!312;UBERON:0000475!3.83e-07!365;UBERON:0000349!5.78e-07!5;UBERON:0004111!6.09e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0002038;1.93e-16;1!UBERON:0009661;1.93e-16;1!UBERON:0002950;1.93e-16;1!UBERON:0001891;1.93e-16;1!UBERON:0001897;8.09e-09;2!UBERON:0010225;8.09e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.93e-16,1;UBERON:0009661,1.93e-16,1;UBERON:0002950,1.93e-16,1;UBERON:0001891,1.93e-16,1;UBERON:0009616,1.93e-16,1;UBERON:0010286,1.93e-16,1;UBERON:0001897,7.49e-09,2;UBERON:0010225,7.49e-09,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.93723678652113,7.63976851116555,17.582617081507,5.13217338068116,14.7043314565753,6.00686115687835,37.4432626746057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552896299656123,0.591095237907095,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.684526894459965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.817220436669454,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0.18628920882415,0,0,1.21319294033318,3.42558400253961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0.638535436228605,0,0,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,6.56423532983707,0,0.20170506870352,0,0,0,0,0.337687923091973,0,0.206686796501184,0.19024743058172,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.815636795721981,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,1.18818560130834,0,0,0,0,0,0,0,0,0,0,2.72345207987757,0,0.271965960763659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34462894620464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p15@MCF2L | |||
}} |
Revision as of 01:35, 11 September 2013
Short description: | p15@MCF2L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_15_at_MCF2L_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 23bp_to_ENST00000469558_5end |
EntrezGene: | MCF2L |
HGNC: | 14576 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 9.07e-75 | 10 |
melanoblast | 9.07e-75 | 10 |
pigment cell | 2.26e-53 | 14 |
light melanocyte | 1.21e-46 | 3 |
neurecto-epithelial cell | 2.65e-37 | 20 |
columnar/cuboidal epithelial cell | 1.45e-27 | 27 |
ecto-epithelial cell | 7.99e-22 | 34 |
migratory neural crest cell | 3.52e-17 | 41 |
dark melanocyte | 7.57e-17 | 1 |
neurectodermal cell | 5.51e-12 | 59 |
ectodermal cell | 8.51e-10 | 72 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 1.93e-16 | 1 |
midbrain nucleus | 1.93e-16 | 1 |
regional part of midbrain | 1.93e-16 | 1 |
midbrain | 1.93e-16 | 1 |
presumptive midbrain | 1.93e-16 | 1 |
midbrain neural tube | 1.93e-16 | 1 |
dorsal plus ventral thalamus | 7.49e-09 | 2 |
thalamic complex | 7.49e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 5.50e-31 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.