FFCP PHASE1:Hg19::chr17:48273307..48273347,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1277|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2197|TSSclassifier=W|UniProt=|association_with_transcript=-281bp_to_ENST00000471344_5end|coexpression_cluster_id=C59|description=CAGE_peak_35_at_COL1A1_5end|id=chr17:48273307..48273347,-|ontology_enrichment_celltype=CL:0000055!3.49e-40!180;CL:0000057!7.23e-24!75;CL:0000183!7.11e-18!59;CL:0000680!1.74e-17!57;CL:0000056!1.74e-17!57;CL:0000355!1.74e-17!57;CL:0000187!1.19e-16!54;CL:0000393!2.26e-14!60;CL:0000211!2.26e-14!60;CL:0000192!1.77e-13!42;CL:0000514!1.77e-13!42;CL:0000048!7.61e-13!430;CL:0000723!3.96e-12!436;CL:0000034!3.94e-11!444;CL:0002371!1.08e-09!591;CL:0000144!1.40e-09!625;CL:0000359!2.71e-09!32;CL:0002334!2.55e-08!12;CL:0000499!7.44e-08!27;CL:0000222!1.36e-07!119;CL:0002494!1.59e-07!16;CL:0002620!1.85e-07!23;CL:0000327!3.99e-07!14|ontology_enrichment_celltype_v019=CL:0002334;1.09e-10;12!CL:0000499;1.92e-09;28!CL:0000057;3.91e-09;73!CL:0000134;5.00e-09;55!CL:0002320;1.56e-08;188!CL:0000327;3.72e-08;15!CL:0000048;6.67e-08;58!CL:0002494;1.07e-07;16!CL:0000723;1.49e-07;61|ontology_enrichment_celltype_v019_2=CL:0000057,2.04e-24,76;CL:0000048,7.39e-17,427;CL:0000723,5.12e-16,433;CL:0000034,6.10e-15,441;CL:0002320,2.22e-11,361;CL:0002334,1.41e-10,12;CL:0000680,4.04e-10,58;CL:0000056,4.04e-10,58;CL:0000355,4.04e-10,58;CL:0000187,8.87e-10,55;CL:0000134,1.64e-09,354;CL:0000499,1.77e-09,28;CL:0000327,3.48e-08,15;CL:0000393,6.54e-08,61;CL:0000211,6.54e-08,61;CL:0000219,7.00e-08,386;CL:0000192,9.26e-08,43;CL:0000514,9.26e-08,43;CL:0002494,1.22e-07,16|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!2.66e-18!83;UBERON:0002329!2.66e-18!83;UBERON:0003077!2.66e-18!83;UBERON:0003059!2.66e-18!83;UBERON:0007282!2.66e-18!83;UBERON:0009618!2.66e-18!83;UBERON:0007285!2.66e-18!83;UBERON:0002385!1.37e-17!63;UBERON:0001015!1.37e-17!63;UBERON:0000383!1.37e-17!63;UBERON:0001134!1.44e-17!61;UBERON:0002036!1.44e-17!61;UBERON:0003082!1.44e-17!61;UBERON:0004290!5.94e-16!70;UBERON:0005256!1.27e-13!143;UBERON:0000486!3.09e-12!82;UBERON:0002100!5.99e-10!216;UBERON:0004872!6.10e-09!84;UBERON:0000475!1.02e-08!365;UBERON:0000490!1.93e-07!138;UBERON:0001013!6.70e-07!14;UBERON:0003102!8.21e-07!95;UBERON:0000948!9.28e-07!24;UBERON:0005498!9.28e-07!24;UBERON:0004140!9.28e-07!24;UBERON:0009881!9.28e-07!24;UBERON:0004141!9.28e-07!24;UBERON:0003084!9.28e-07!24;UBERON:0007005!9.28e-07!24;UBERON:0004139!9.28e-07!24;UBERON:0004291!9.28e-07!24|ontology_enrichment_uberon_v019=UBERON:0002384;5.16e-09;198!UBERON:0003688;6.79e-08;6!UBERON:0002358;6.79e-08;6!UBERON:0003684;6.79e-08;6!UBERON:0001178;6.79e-08;6!UBERON:0004457;1.05e-07;9!UBERON:0000042;1.05e-07;9!UBERON:0001013;4.39e-07;14|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.67e-11,371;UBERON:0001134,9.51e-11,62;UBERON:0002036,9.51e-11,62;UBERON:0003082,9.51e-11,62;UBERON:0002385,4.46e-10,64;UBERON:0001015,4.46e-10,64;UBERON:0000383,4.46e-10,64;UBERON:0007524,6.33e-09,73;UBERON:0002329,1.30e-08,71;UBERON:0003059,1.30e-08,71;UBERON:0007282,1.30e-08,71;UBERON:0004290,1.30e-08,71;UBERON:0009618,1.30e-08,71;UBERON:0003077,2.37e-08,72;UBERON:0007285,2.37e-08,72;UBERON:0007503,5.08e-08,78;UBERON:0003688,7.52e-08,6;UBERON:0002358,7.52e-08,6;UBERON:0003684,7.52e-08,6;UBERON:0001178,7.52e-08,6;UBERON:0001013,4.57e-07,14;UBERON:0000486,4.74e-07,83|phase1_expression=12.3541297903979,10.7050261945492,13.3906683891173,14.0102617694383,19.6662881548007,13.9574163856059,15.1979926900986,1.26343974685366,0.261185628199839,0.491467873003018,1.39560233594486,0,2.11013582582763,1.23766352960047,1.98838425436749,2.01697543935533,0.602694528023977,0,0.975865597581014,1.96993692922861,3.4680117511523,3.44800193625897,0,0.273748850145768,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,4.87613732627923,2.01210257911091,2.55725123687061,12.2889311810753,14.5387994084408,3.76600949298142,7.95285947051099,10.2193322763554,0.378139268656271,2.88248216701333,1.40535657109002,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.3819061161174,8.48424428152684,1.45650098894541,25.5284592466444,4.61068896857864,3.36406560085384,3.20246987189115,8.38669664618344,1.55605517699883,1.61652806483626,1.30769522490767,3.93529311876822,2.88087962239999,0,0,0,0.597794722207204,0.469737994575059,0.323745888736263,0.140450806702248,0.61246251376468,0.491337269247072,1.03325781175765,40.3920971475898,25.2212267864128,7.28129089550421,9.3420358436111,0.168336113954066,0.500474079487857,0.554128230968366,2.63386572528503,5.82326812018137,16.2257103619125,0.907457465280168,3.94657198515496,6.62027905337559,7.84148034290379,2.70081986475962,4.225153698776,4.12224864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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-281bp_to_ENST00000471344_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_35_at_COL1A1_5end | |||
|id=chr17:48273307..48273347,- | |||
|ontology_enrichment_celltype=CL:0000055!3.49e-40!180;CL:0000057!7.23e-24!75;CL:0000183!7.11e-18!59;CL:0000680!1.74e-17!57;CL:0000056!1.74e-17!57;CL:0000355!1.74e-17!57;CL:0000187!1.19e-16!54;CL:0000393!2.26e-14!60;CL:0000211!2.26e-14!60;CL:0000192!1.77e-13!42;CL:0000514!1.77e-13!42;CL:0000048!7.61e-13!430;CL:0000723!3.96e-12!436;CL:0000034!3.94e-11!444;CL:0002371!1.08e-09!591;CL:0000144!1.40e-09!625;CL:0000359!2.71e-09!32;CL:0002334!2.55e-08!12;CL:0000499!7.44e-08!27;CL:0000222!1.36e-07!119;CL:0002494!1.59e-07!16;CL:0002620!1.85e-07!23;CL:0000327!3.99e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.09e-10;12!CL:0000499;1.92e-09;28!CL:0000057;3.91e-09;73!CL:0000134;5.00e-09;55!CL:0002320;1.56e-08;188!CL:0000327;3.72e-08;15!CL:0000048;6.67e-08;58!CL:0002494;1.07e-07;16!CL:0000723;1.49e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.04e-24,76;CL:0000048,7.39e-17,427;CL:0000723,5.12e-16,433;CL:0000034,6.10e-15,441;CL:0002320,2.22e-11,361;CL:0002334,1.41e-10,12;CL:0000680,4.04e-10,58;CL:0000056,4.04e-10,58;CL:0000355,4.04e-10,58;CL:0000187,8.87e-10,55;CL:0000134,1.64e-09,354;CL:0000499,1.77e-09,28;CL:0000327,3.48e-08,15;CL:0000393,6.54e-08,61;CL:0000211,6.54e-08,61;CL:0000219,7.00e-08,386;CL:0000192,9.26e-08,43;CL:0000514,9.26e-08,43;CL:0002494,1.22e-07,16 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.66e-18!83;UBERON:0002329!2.66e-18!83;UBERON:0003077!2.66e-18!83;UBERON:0003059!2.66e-18!83;UBERON:0007282!2.66e-18!83;UBERON:0009618!2.66e-18!83;UBERON:0007285!2.66e-18!83;UBERON:0002385!1.37e-17!63;UBERON:0001015!1.37e-17!63;UBERON:0000383!1.37e-17!63;UBERON:0001134!1.44e-17!61;UBERON:0002036!1.44e-17!61;UBERON:0003082!1.44e-17!61;UBERON:0004290!5.94e-16!70;UBERON:0005256!1.27e-13!143;UBERON:0000486!3.09e-12!82;UBERON:0002100!5.99e-10!216;UBERON:0004872!6.10e-09!84;UBERON:0000475!1.02e-08!365;UBERON:0000490!1.93e-07!138;UBERON:0001013!6.70e-07!14;UBERON:0003102!8.21e-07!95;UBERON:0000948!9.28e-07!24;UBERON:0005498!9.28e-07!24;UBERON:0004140!9.28e-07!24;UBERON:0009881!9.28e-07!24;UBERON:0004141!9.28e-07!24;UBERON:0003084!9.28e-07!24;UBERON:0007005!9.28e-07!24;UBERON:0004139!9.28e-07!24;UBERON:0004291!9.28e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;5.16e-09;198!UBERON:0003688;6.79e-08;6!UBERON:0002358;6.79e-08;6!UBERON:0003684;6.79e-08;6!UBERON:0001178;6.79e-08;6!UBERON:0004457;1.05e-07;9!UBERON:0000042;1.05e-07;9!UBERON:0001013;4.39e-07;14 | |||
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| |||
|short_description=p35@COL1A1 | |||
}} |
Revision as of 14:28, 11 September 2013
Short description: | p35@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_35_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -281bp_to_ENST00000471344_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.04e-24 | 76 |
multi fate stem cell | 7.39e-17 | 427 |
somatic stem cell | 5.12e-16 | 433 |
stem cell | 6.10e-15 | 441 |
connective tissue cell | 2.22e-11 | 361 |
preadipocyte | 1.41e-10 | 12 |
muscle precursor cell | 4.04e-10 | 58 |
myoblast | 4.04e-10 | 58 |
multi-potent skeletal muscle stem cell | 4.04e-10 | 58 |
muscle cell | 8.87e-10 | 55 |
mesenchymal cell | 1.64e-09 | 354 |
stromal cell | 1.77e-09 | 28 |
extracellular matrix secreting cell | 3.48e-08 | 15 |
electrically responsive cell | 6.54e-08 | 61 |
electrically active cell | 6.54e-08 | 61 |
motile cell | 7.00e-08 | 386 |
smooth muscle cell | 9.26e-08 | 43 |
smooth muscle myoblast | 9.26e-08 | 43 |
cardiocyte | 1.22e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.67e-11 | 371 |
skeletal muscle tissue | 9.51e-11 | 62 |
striated muscle tissue | 9.51e-11 | 62 |
myotome | 9.51e-11 | 62 |
muscle tissue | 4.46e-10 | 64 |
musculature | 4.46e-10 | 64 |
musculature of body | 4.46e-10 | 64 |
dense mesenchyme tissue | 6.33e-09 | 73 |
somite | 1.30e-08 | 71 |
presomitic mesoderm | 1.30e-08 | 71 |
presumptive segmental plate | 1.30e-08 | 71 |
dermomyotome | 1.30e-08 | 71 |
trunk paraxial mesoderm | 1.30e-08 | 71 |
paraxial mesoderm | 2.37e-08 | 72 |
presumptive paraxial mesoderm | 2.37e-08 | 72 |
epithelial vesicle | 5.08e-08 | 78 |
omentum | 7.52e-08 | 6 |
peritoneum | 7.52e-08 | 6 |
abdominal cavity | 7.52e-08 | 6 |
visceral peritoneum | 7.52e-08 | 6 |
adipose tissue | 4.57e-07 | 14 |
multilaminar epithelium | 4.74e-07 | 83 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.