FFCP PHASE1:Hg19::chr17:74639830..74639844,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55808|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=23614|TSSclassifier=S|UniProt=Q9NSC7,Q9NXQ7|association_with_transcript=49bp_to_ENST00000156626,NM_018414,uc002jsh.2,uc002jsi.2,uc002jsj.2_5end|coexpression_cluster_id=C201|description=CAGE_peak_2_at_ST6GALNAC1_5end|id=chr17:74639830..74639844,-|ontology_enrichment_celltype=CL:0002076!1.92e-09!43;CL:0002368!1.57e-08!13;CL:0000223!1.02e-07!59|ontology_enrichment_celltype_v019=CL:0002368;1.15e-12;13!CL:0002202;2.40e-09;9!CL:0002632;2.40e-09;9!CL:0002076;4.04e-07;42|ontology_enrichment_celltype_v019_2=CL:0002368,1.24e-12,13;CL:0002076,6.28e-10,42;CL:0000223,7.07e-10,58;CL:0002202,2.91e-09,9;CL:0002632,2.91e-09,9|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:1036!3.00e-07!8|ontology_enrichment_disease_v019=DOID:1036;2.73e-12;8|ontology_enrichment_disease_v019_2=DOID:1036,2.35e-12,8|ontology_enrichment_uberon=UBERON:0007023!3.28e-26!115;UBERON:0004119!1.11e-13!169;UBERON:0000925!1.11e-13!169;UBERON:0006595!1.11e-13!169;UBERON:0004921!2.98e-12!129;UBERON:0004185!2.98e-12!129;UBERON:0001007!1.47e-11!155;UBERON:0001555!1.47e-11!155;UBERON:0007026!1.47e-11!155;UBERON:0000077!5.78e-09!130;UBERON:0005409!5.65e-08!35|ontology_enrichment_uberon_v019=UBERON:0004921;1.32e-15;33!UBERON:0005409;3.16e-15;22!UBERON:0000160;1.81e-12;17!UBERON:0007196;5.10e-09;15!UBERON:0001558;5.10e-09;15!UBERON:0005178;2.16e-07;34!UBERON:0002224;2.16e-07;34!UBERON:0002108;2.48e-07;4!UBERON:0003126;3.14e-07;7!UBERON:0001005;3.14e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0004921,1.52e-20,118;UBERON:0004119,1.88e-17,160;UBERON:0000925,1.88e-17,160;UBERON:0006595,1.88e-17,160;UBERON:0005409,5.05e-17,25;UBERON:0001007,2.06e-16,145;UBERON:0001555,2.06e-16,145;UBERON:0007026,2.06e-16,145;UBERON:0000160,1.47e-12,17;UBERON:0001041,4.42e-12,87;UBERON:0007196,5.98e-09,15;UBERON:0001558,5.98e-09,15;UBERON:0000065,2.44e-08,54;UBERON:0005178,3.27e-08,34;UBERON:0002224,3.27e-08,34;UBERON:0005181,7.01e-08,35;UBERON:0002108,2.60e-07,4;UBERON:0003126,4.50e-07,7;UBERON:0001005,4.50e-07,7;UBERON:0000059,9.16e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.09340350391728,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,1.83884244895785,3.31326510656075,2.58827807116751,0,0,0.293600439334847,0,0,0.434021741431704,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57367816091066,3.14408610199332,1.43921049299656,0,0,0,0,0.668462741311041,0,0.221533894583621,0,0.384273959177026,0.130059347559878,0.493313713811028,0.276350017785848,0.869409257205157,0.444859689486181,1.33770414044857,0,1.35971211237079,2.29932296161153,1.71813722741315,1.26509846009751,0,1.30216690771284,0,0.150575119077773,1.15187950038977,1.24930726552346,0,0,0,0.267440195783507,0.144824403882799,0,0.670700859703636,0,0,0,0,0,0,0,0,0,2.35762335895883,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,1.40241773803446,0,1.47008711385542,0,0,0,0,3.93563003337963,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.862510299438069,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,0,0.213455115606889,0,4.99306318531491,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,1.20303882181971,1.01289087829486,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75407901316748,2.87578996127391,0,0,0,1.33953315142039,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29740779938543,3.84380134730212,0.765676274967505,1.6185244936888,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.84888450902048,2.01090682660736,1.08890984861323,1.31801321087491,0.43050537267123,0,0.443430153536676,0,0.507447609232169,0,0,0.714695326373367,0,0.648473311192717,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.01131113011436,1.23087398947712,1.6227340708559,0,4.22961015263549,28.2582216016412,0,0,1.67165076416218,0,0.23874448473769,0,0,0,0.140669416410513,0,0,0,3.58646378851925,13.8141957765574,0,0,0,0,0.539210106883961,4.29650819221462,0,0.394573622547734,0,0,0,0.278304294485554,0,0,0,0,1.93448862085349,1.27126825146383,0,0,0,0,0,0.241192877250816,0,0.221158519862449,0,0.219385397153973,0,1.25481369850743,9.54183205447084,0,0,0.179515288819544,9.01773186952667,0,0.274792780205587,0,9.19739683761629,0,0,6.54227415789824,7.84250137270958,7.04850665298539,4.36433585265626,1.58936578980379,0,13.8747886935276,0.848118428603645,0,72.6541209687309,24.6796604964316,95.9317327545792,0,0,0,0.674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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55808 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23614 | |||
|TSSclassifier=S | |||
|UniProt=Q9NSC7,Q9NXQ7 | |||
|association_with_transcript=49bp_to_ENST00000156626,NM_018414,uc002jsh.2,uc002jsi.2,uc002jsj.2_5end | |||
|coexpression_cluster_id=C201 | |||
|description=CAGE_peak_2_at_ST6GALNAC1_5end | |||
|id=chr17:74639830..74639844,- | |||
|ontology_enrichment_celltype=CL:0002076!1.92e-09!43;CL:0002368!1.57e-08!13;CL:0000223!1.02e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.15e-12;13!CL:0002202;2.40e-09;9!CL:0002632;2.40e-09;9!CL:0002076;4.04e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.24e-12,13;CL:0002076,6.28e-10,42;CL:0000223,7.07e-10,58;CL:0002202,2.91e-09,9;CL:0002632,2.91e-09,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1036!3.00e-07!8 | |||
|ontology_enrichment_disease_v019=DOID:1036;2.73e-12;8 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,2.35e-12,8 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.28e-26!115;UBERON:0004119!1.11e-13!169;UBERON:0000925!1.11e-13!169;UBERON:0006595!1.11e-13!169;UBERON:0004921!2.98e-12!129;UBERON:0004185!2.98e-12!129;UBERON:0001007!1.47e-11!155;UBERON:0001555!1.47e-11!155;UBERON:0007026!1.47e-11!155;UBERON:0000077!5.78e-09!130;UBERON:0005409!5.65e-08!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.32e-15;33!UBERON:0005409;3.16e-15;22!UBERON:0000160;1.81e-12;17!UBERON:0007196;5.10e-09;15!UBERON:0001558;5.10e-09;15!UBERON:0005178;2.16e-07;34!UBERON:0002224;2.16e-07;34!UBERON:0002108;2.48e-07;4!UBERON:0003126;3.14e-07;7!UBERON:0001005;3.14e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,1.52e-20,118;UBERON:0004119,1.88e-17,160;UBERON:0000925,1.88e-17,160;UBERON:0006595,1.88e-17,160;UBERON:0005409,5.05e-17,25;UBERON:0001007,2.06e-16,145;UBERON:0001555,2.06e-16,145;UBERON:0007026,2.06e-16,145;UBERON:0000160,1.47e-12,17;UBERON:0001041,4.42e-12,87;UBERON:0007196,5.98e-09,15;UBERON:0001558,5.98e-09,15;UBERON:0000065,2.44e-08,54;UBERON:0005178,3.27e-08,34;UBERON:0002224,3.27e-08,34;UBERON:0005181,7.01e-08,35;UBERON:0002108,2.60e-07,4;UBERON:0003126,4.50e-07,7;UBERON:0001005,4.50e-07,7;UBERON:0000059,9.16e-07,11 | |||
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| |||
|short_description=p2@ST6GALNAC1 | |||
}} |
Revision as of 15:50, 11 September 2013
Short description: | p2@ST6GALNAC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_ST6GALNAC1_5end |
Coexpression cluster: | C201_colon_small_adenocarcinoma_duodenum_temporal_signet_gall |
Association with transcript: | 49bp_to_ENST00000156626, NM_018414, uc002jsh.2, uc002jsi.2, uc002jsj.2_5end |
EntrezGene: | ST6GALNAC1 |
HGNC: | 23614 |
UniProt: | Q9NSC7Q9NXQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.24e-12 | 13 |
endo-epithelial cell | 6.28e-10 | 42 |
endodermal cell | 7.07e-10 | 58 |
epithelial cell of tracheobronchial tree | 2.91e-09 | 9 |
epithelial cell of lower respiratory tract | 2.91e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 1.52e-20 | 118 |
endoderm-derived structure | 1.88e-17 | 160 |
endoderm | 1.88e-17 | 160 |
presumptive endoderm | 1.88e-17 | 160 |
gastrointestinal system | 5.05e-17 | 25 |
digestive system | 2.06e-16 | 145 |
digestive tract | 2.06e-16 | 145 |
primitive gut | 2.06e-16 | 145 |
intestine | 1.47e-12 | 17 |
foregut | 4.42e-12 | 87 |
tracheobronchial tree | 5.98e-09 | 15 |
lower respiratory tract | 5.98e-09 | 15 |
respiratory tract | 2.44e-08 | 54 |
thoracic cavity element | 3.27e-08 | 34 |
thoracic cavity | 3.27e-08 | 34 |
thoracic segment organ | 7.01e-08 | 35 |
small intestine | 2.60e-07 | 4 |
trachea | 4.50e-07 | 7 |
respiratory airway | 4.50e-07 | 7 |
large intestine | 9.16e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 2.35e-12 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.